Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla11g00028 ATGTGTTTAGCTTTATCCCATGTGTTCTGCGTAGGTAGTAAGACATTTAATCTGATACTTGTGATGTTCTTGTTTAACGCATCCACACCGGTTTTGCAGGTCGGCGATTGGGTTGATTGGCTCATAAATATCTCTCTGATATTATATCATGTCCTTTTCAGCTGTCTCAAATCTTCCCTCAGGAGGACCCCATTCAGATCCTTCAGATGTAAGCATGGAGCACTAGAAAATTGCTTTCCTTTCCCAGTAGTTATGACGTTTTCCTTACGAGGGTTAAGCTTAATGGTACCAGATCAACATAATATAAGACTTGCCAAATGGGCACATTCACTTGATTGCATCCCCGTCTTTGCAATCCCCTCCTTCTCTCTTCCATGTTTCATTTGTCTTGATTGGGGATGTGCTTTGCTAGTAAAGTTTGGATTTTCAAGTATGATAACGTGTGTGCTGCACCTAATTTCAGATGGTATCAAGATGATATTTCACAGGCCCTCTTCCGATGCATTGTATAGGGAATTATGGCATGCTTGTGCAGGACCACTTGTCACCCTTCCACGCCAAGATGAACGAGTATACTACTTTCCTCAGGGTCACATGGAACAGTTTACTTACTGGAATTTATGTCTTTACTTGTTGACTCCTAAAACCTGTTCAATAGATTTCTTGTACCATCTGGAAGCCTCGATGCATCAAGGTTTGGAGCAACAAATGCCTTCATTCAACCTTCCATCAAAAATACTTTGTAAAGTTGTCAATGTTGTTCTTCGGGCGGAACCCGACACCGATGAAGTTTATGCTCAGATAACTCTATTACCAGAAAGCAATGTTAGTTCTGTACTCTTTCACAAACTCTTGGACTATAGTAGGCAGCCATCACTCACCTATGTGCAAAGTGAAGTAACGAGCCCAGATCCTGCCCTTCCTGAGCCTACAAGATGTAATGTTCACTCATTTTGCAAGACGCTCACTGCTTCTGACACTAGCACTCATGGTGGCTTTTCTGTTCTTAGGAGGCATGCGGATGACTGTCTGCCACCTTTGGATATGTCTCAGCAGCCACCATGGCAAGAATTGGTCGCGACTGATTTACATGGGAGTCAATGGCATTTTAGGCACATTTTTCGAGGTATGGTTATGAAGTTGAACAAAGGTGAAAATGGAGAGCTTCGTGTTGGGGTGAGAAGACTCATGAGACAACTAAACAATATGCCATCTTCTGTTATATCAAGTCACAGTATGCATCTTGGAGTTTTAGCCACTGCTTCTCATGCTATTGCAACTGGAACACTCTTTTCTGTCTTTTACAAGCCAAGGACAAGCAGGTCTACGTTTCTTGTAAGTCTGAACAAGTACCTTGAAGCTCAAAACCATAAACTCTCTGTTGGGATGAGGTTCAAGATGAGGTTTGAGGGCGAGGAAGTACCTGAAAGAAGTTTTAGCGGAACAATTGTTGGTCTTGGAGATAATGCGTCACCTGGATGGGCGAATTCTGAGTGGCGATCGTTAAAGGTGCAATGGGATGAACCTTCATCTATCTTGCGTCCAGATAAGGTGTCTGCTTGGGAATTGGAGCCACTTGTTGCTTCTAACCCTCTAAGCACTCAGCCTACACAGAGGAACAAGCGTCCACGGCCTACTGTTTTGCCTTCATCTTCGCCAGATGCAACTGTACTTGGTGGGTGGAAACCTACGGTTGAATCTTCTGCTTTCTCATATACTGAGCCACAGCGCGGAAGGGACCTATATTCATCACCGAAGTTCAGTACTGCTGCTTCAAATTCACTTGGTTTTAATGCGAATGGTTCTCTTGGTGCAGTGTCCAGCAACACCTACTGGTCTAATACCAATAGGGTGGAAAATATTATGGACACTTCATCTCATGTAGCAAACAGGGAACCCATTGAAAAGAAACAGAACACTAGAAATGGATGCAGGCTCTTTGGTATCCAGCTTCTTGGAAATTCTAATGTAGACGAAGCTTCTCCTATTTCAACGCCTAAAATGGTCGGTGAGGATAGGCTGGTTCCACCTGTAGACTCAGAATTTGACCAGCATTCTGAACCATCAAACATTCCCCGATCAGATATTCCTTCAGTAAGCTGTGATGCTGATAAATCGTGCCTGATCTCCCCATTAGAGTCTCAAAGCAGACAAATCCGCAGCTGCACAAAGGTTCACATGCAAGGAATTGCTGTTGGGAGGGCTGTTGATTTAACCCGGTTCAATCAATATGATGATCTACTCAGGAAATTGGAGGAGATGTTTGACATAGAGGGTGAGCTCTGTGGCTCTTTAAAGAAATGGCAGGTTGTTTACACCGATGATGAAGATGATATGATGATGGTTGGAGATGATCCTTGGAAATATCGGAACAAATCGAATGCTATCAATATTGATCTTGCTTTCATCTTCAAGTTAATTGCCATACGAGTTCTGCAGCATGGTAAGGAAGATATTCATTTACACAACAGAAGAAGTGAAGAGACTCTCGCCCAAGATAAAACTCCCACTGGGTGGAGATGGAAAGCTCTGCAAACCAGATTCCGATACAATTGCCAACCACACGGAGGATCAATCGTCCATCGTGGGATCAGATTGCTGATGGAGACGTATCCTGTCGAATAG 2625 43.43 MCLALSHVFCVGSKTFNLILVMFLFNASTPVLQVGDWVDWLINISLILYHVLFSCLKSSLRRTPFRSFRCKHGALENCFPFPVVMTFSLRGLSLMVPDQHNIRLAKWAHSLDCIPVFAIPSFSLPCFICLDWGCALLVKFGFSSMITCVLHLISDGIKMIFHRPSSDALYRELWHACAGPLVTLPRQDERVYYFPQGHMEQFTYWNLCLYLLTPKTCSIDFLYHLEASMHQGLEQQMPSFNLPSKILCKVVNVVLRAEPDTDEVYAQITLLPESNVSSVLFHKLLDYSRQPSLTYVQSEVTSPDPALPEPTRCNVHSFCKTLTASDTSTHGGFSVLRRHADDCLPPLDMSQQPPWQELVATDLHGSQWHFRHIFRGMVMKLNKGENGELRVGVRRLMRQLNNMPSSVISSHSMHLGVLATASHAIATGTLFSVFYKPRTSRSTFLVSLNKYLEAQNHKLSVGMRFKMRFEGEEVPERSFSGTIVGLGDNASPGWANSEWRSLKVQWDEPSSILRPDKVSAWELEPLVASNPLSTQPTQRNKRPRPTVLPSSSPDATVLGGWKPTVESSAFSYTEPQRGRDLYSSPKFSTAASNSLGFNANGSLGAVSSNTYWSNTNRVENIMDTSSHVANREPIEKKQNTRNGCRLFGIQLLGNSNVDEASPISTPKMVGEDRLVPPVDSEFDQHSEPSNIPRSDIPSVSCDADKSCLISPLESQSRQIRSCTKVHMQGIAVGRAVDLTRFNQYDDLLRKLEEMFDIEGELCGSLKKWQVVYTDDEDDMMMVGDDPWKYRNKSNAINIDLAFIFKLIAIRVLQHGKEDIHLHNRRSEETLAQDKTPTGWRWKALQTRFRYNCQPHGGSIVHRGIRLLMETYPVE 874
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 389045 397947 - ClCG11G000280.2 Cla11g00028 283850
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla11g00028 874 Pfam AUX/IAA family 718 788 IPR033389 -
Cla11g00028 874 SUPERFAMILY DNA-binding pseudobarrel domain 307 424 IPR015300 -
Cla11g00028 874 PANTHER AUXIN RESPONSE FACTOR 9 224 377 - -
Cla11g00028 874 SUPERFAMILY CAD & PB1 domains 722 789 - -
Cla11g00028 874 Gene3D - 715 800 - -
Cla11g00028 874 Gene3D - 315 386 IPR015300 -
Cla11g00028 874 MobiDBLite consensus disorder prediction 529 560 - -
Cla11g00028 874 Gene3D - 458 531 - -
Cla11g00028 874 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 224 377 IPR044835 GO:0003677|GO:0006355|GO:0009725
Cla11g00028 874 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 383 788 IPR044835 GO:0003677|GO:0006355|GO:0009725
Cla11g00028 874 PANTHER AUXIN RESPONSE FACTOR 9 160 202 - -
Cla11g00028 874 MobiDBLite consensus disorder prediction 529 553 - -
Cla11g00028 874 Pfam Auxin response factor 421 503 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Cla11g00028 874 PANTHER AUXIN RESPONSE FACTOR 9 383 788 - -
Cla11g00028 874 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 160 202 IPR044835 GO:0003677|GO:0006355|GO:0009725
Cla11g00028 874 ProSiteProfiles PB1 domain profile. 720 801 IPR000270 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla09g00886 Cla-Chr9:9118977 Cla11g00028 Cla-Chr11:389045 2.68E-172 dispersed
Cla11g00028 Cla-Chr11:389045 Cla06g01783 Cla-Chr6:31246818 5.53E-26 dispersed
Cla11g00028 Cla-Chr11:389045 Cla01g02432 Cla-Chr1:37937835 2.79E-10 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla11g00028 K14486 - csv:101204612 1087.79