Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cla11g00044 | ATGGAGGGAGGACAAGACGATGCCGGAAATGGGTTCACGGCGGCCACTGGATCAAATCATCCGAGACCCGAGGCGGCAGCTCCACCACCGGAAGGTGGTGGTCCGGTGGGTTCTTCAGCGGTGGCAGGAAAGAAGAAGAGGGGGAGACCGAGGAAGTATGGGCCGGACGGGAAGTTGAATGTGGCGGCACTGTCGCCGAAGCCGATATCGGCGTCGGCACCGGCACCGGCGGCAGTTATTGATTTCTCGGCGGAGAAACGTGGAAAAGTGCGGCCGGCGACTTCCTTGACCAAAACCAAATATGAAGTGGAGAATTTAGGTGAATGGGTACCTTGTTCTGTTGGTGCTAATTTCACACCACATATCATCACAGTAAGCACTGGCGAGGATGTTACGATGAAGGTTCTCTCATTTTCTCAACAAGGGCCTCGAGCAATCTGCATTCTCTCTGCTAACGGTGTGATTTCGAGCGTCACGCTCCGTCAACCCGACTCCTCTGGAGGAACATTAACATATGAGGTTGGTCGTTTTGAGATATTGTCATTGTCGGGATCGTTCATGCCGAGTGACAACGCAGGAACAAAGAGCAGAATGGGTGGAATGAGTGTCTCCTTAGCAAGTCCAGATGGACGAGTTGTTGGTGGTGGAGTTGCCGGTTTGTTAGTAGCTGCAAGTCCAGTTCAAGTGGTTGTAGGAAGCTTTTTATCTGGAAACCAACATGAGCAAAAGTCGAAAAAATCAAAACCCGACGTCGTATTACCGGTTTCTGCTTTTCCAATCTCTAGTGTGGAACCAAAATCATACAAGACGACGACGACGACAACGACATCTTTGTTTCGTGCTGAAACATGGTCACCTTTAGTTCCAGATTTAAGAAGCCAGCCAACTGATATCAATGGTGCCAACGGTAAATTTGTATTATGGAGAAAGCATCTGCCTGCAAATCAAATGAAAGAATTGCACACGGATGTGGTGTAA | 978 | 49.49 | MEGGQDDAGNGFTAATGSNHPRPEAAAPPPEGGGPVGSSAVAGKKKRGRPRKYGPDGKLNVAALSPKPISASAPAPAAVIDFSAEKRGKVRPATSLTKTKYEVENLGEWVPCSVGANFTPHIITVSTGEDVTMKVLSFSQQGPRAICILSANGVISSVTLRQPDSSGGTLTYEVGRFEILSLSGSFMPSDNAGTKSRMGGMSVSLASPDGRVVGGGVAGLLVAASPVQVVVGSFLSGNQHEQKSKKSKPDVVLPVSAFPISSVEPKSYKTTTTTTTSLFRAETWSPLVPDLRSQPTDINGANGKFVLWRKHLPANQMKELHTDVV | 325 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 11 | 568389 | 571877 | - | ClCG11G000430.1 | Cla11g00044 | 283866 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cla11g00044 | 325 | CDD | DUF296 | 119 | 211 | IPR005175 | - | |
| Cla11g00044 | 325 | Gene3D | - | 120 | 252 | - | - | |
| Cla11g00044 | 325 | Pfam | Plants and Prokaryotes Conserved (PCC) domain | 120 | 234 | IPR005175 | - | |
| Cla11g00044 | 325 | PANTHER | AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 1 | 42 | 299 | - | - | |
| Cla11g00044 | 325 | ProSiteProfiles | PPC domain profile profile. | 115 | 261 | IPR005175 | - | |
| Cla11g00044 | 325 | MobiDBLite | consensus disorder prediction | 1 | 60 | - | - | |
| Cla11g00044 | 325 | PANTHER | AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 | 42 | 299 | IPR039605 | GO:0003680 | |
| Cla11g00044 | 325 | SUPERFAMILY | AF0104/ALDC/Ptd012-like | 117 | 241 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cla05g00236 | Cla-Chr5:2141901 | Cla11g00044 | Cla-Chr11:568389 | 6.53E-85 | dispersed | |
| Cla05g00810 | Cla-Chr5:7912041 | Cla11g00044 | Cla-Chr11:568389 | 4.74E-65 | dispersed | |
| Cla11g00044 | Cla-Chr11:568389 | Cla11g01851 | Cla-Chr11:32052269 | 4.92E-58 | dispersed | |
| Cla11g00044 | Cla-Chr11:568389 | Cla01g00342 | Cla-Chr1:3726056 | 8.95E-119 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cla11g00044 | - | - | csv:101205374 | 452.21 |