Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla11g00064 | ATGATGGAGGAAGATGCCAAAGAACAGCCGAAGGCTACAGAACTTCAGGCAAAGAAAACCCATGTTTCTCAGTTGCCTTGCGACGGTGATGGCATTTGCATGCTCTGCAAGGCCAAGCCTTCTGACTTGGAGACGATCACTTGCAAAACTTGCGTCACCCCTTGGCATGTTAGTTGTCTCTCAAATCCCCCTGAAACCCTTGCATCCACCCTTCAATGGGACTGTCCTGATTGTTCCACCCCTCCCGAAGATGTTCCCCTTCCTTCGCTAGGCAACCATTCACTCCCCACTGCGCCTTCTAGTGACCTTGTTGCTGCGATTCGAGCCATTGAGGCCGATGCCTCCCTTACTGACCGTGAGAAGGCAAAGAAGCGCCAAGAACTTCTCAGCGGAAAGTTGCAATCCGACAAGGATGACCATGATACCAACAAGGAAAAGAAAAAAAAAGGGGATGATGTTTTGGATTTGTTTGACGAGAGATTGAACTGCTCCTTCTGCATGCAGTTACCAGAAAGGCCTGTCACCACCCCATGTGGCCACAATTTCTGCTTAAAATGTTTCCAGAAGTGGATTGGACAAGGAAAGAACACTTGTGCAAAGTGCCGCTGCGTGATTCCCTCCAAAATGGCTAGCCAGCCCCGTATTAACTCCACCCTTGTAGTGGCCATTCGTATGGCTAAATTGTCAAAATCATTTGCTTCTGGAGGACCTCAGAAGGTTTATCATTTTGTCCACAATCAAAATAGACCAGATAAAGCCTATACCACTGATCGGGCACAAAAAAAAGGAAAAGCTAATGCTGCAAGTGGAAAAATATTTGTTACAATTCCATCTGATCATTTTGGTCCTATTCCTGCCGAAAATGATCCTGAGAGAAACCAGGGTGTTCTGGTTGGTGAATGCTGGGAGGATAGGCTAGAATGTCGTCAATGGGGCGCTCACTTTCCACATGTTGCAGGTATAGCGGGACAGTCAAATATTGGTGCACAGTCGGTGGTTCTTTCTGGTGGCTACCAGGATGATGAAGATCATGGGGAGTGGTTTCTCTACACTGGAAGGTCTCTCTTTTCTTGTTCTCTTGCTGCTGCTTCTGTACTCCATGCAGTCTCTTCTGAAGAACTGATGAGTACAGTTGGCGGTCGAGACCTTAGTGGGAACAAGCGTACAAGCAAGGATCAATCTTTTGACCAGAAATTTGAAAAATCAAACAAAGCGCTACAAGTTAGCTGCGCGAAAGGTTATCCTGTTAGGGTTGTTAGAATATATCTTTTCGAAGACAGTTACAGAATCTGCTTTACAACGCCTTGGGTCTCTTGTTTATACATTTTCTATGAGAGTTTATCGCTCAAAATTCCAGAATGGGCGACGAACTACTTAGTTTTCTACTTCCATGGAACTGGAAAAGTTCATGATCTCACAAAGAAAAGCGTTCCTCATATGCTCCAGAGAAGGGATTGCGATGCGACAATGATCCTGCTCCATGGACAAGTTTTTAACTTCAGTGATGAACATGGAGATCGACCTAGACCCTTACCTGCAATTTCAGAGTTGAAAAAAGCCACAGATATTACGGAGAGGAAGGAAGGTCCATCATGGGACTTTGATGAGAAAGACGGTCAATGGAAGTGGAGGAAAGATCCACCAACGAGCAAGAGACCAGTTGAAGCTCTAGATTCTAATGGGAAGAGGTCAAGGATAAGAATTAGGCAATCACATATTATGAGTGTCCGAGAAAAGTTACTGAAAGAGTTTAGCTGCCTTATTTGCCGGGAGGTGATGAGTTTACCAATTACTACGCCTTGTGCCCATAACTTTTGCAAGTCATGCTTGGAAGGTGCTTTTGTAGGGAAGACATTCTTGAGAGAGAGAAGCACCGGTGGACGGGCTCTTAGATCCCAAAAGAATGTCTTGACTTGTCCTTGTTGCCCCACAGATATATCTGATTTTCTACAGAATCTTCAGGTAAATAGAGAGTTGTTGGATGTGATCGAGTCATTAAAAAGTAAGATTGAAGAAGGGGATGGAGCATCTGAGAAGCTGTGTGAAGAAGAAGAGGTAGATGGGGAAGAGGAGAATGAGGATGAAGATGAGGATGAAGGGAAGGGAAAAGATGGAAGCAATGCAAATGTAAGCAGCAGTCCTGTGGAAACGAGGAAGCGAGCAAAGGTGGATGATTTGGAATGA | 2184 | 45.05 | MMEEDAKEQPKATELQAKKTHVSQLPCDGDGICMLCKAKPSDLETITCKTCVTPWHVSCLSNPPETLASTLQWDCPDCSTPPEDVPLPSLGNHSLPTAPSSDLVAAIRAIEADASLTDREKAKKRQELLSGKLQSDKDDHDTNKEKKKKGDDVLDLFDERLNCSFCMQLPERPVTTPCGHNFCLKCFQKWIGQGKNTCAKCRCVIPSKMASQPRINSTLVVAIRMAKLSKSFASGGPQKVYHFVHNQNRPDKAYTTDRAQKKGKANAASGKIFVTIPSDHFGPIPAENDPERNQGVLVGECWEDRLECRQWGAHFPHVAGIAGQSNIGAQSVVLSGGYQDDEDHGEWFLYTGRSLFSCSLAAASVLHAVSSEELMSTVGGRDLSGNKRTSKDQSFDQKFEKSNKALQVSCAKGYPVRVVRIYLFEDSYRICFTTPWVSCLYIFYESLSLKIPEWATNYLVFYFHGTGKVHDLTKKSVPHMLQRRDCDATMILLHGQVFNFSDEHGDRPRPLPAISELKKATDITERKEGPSWDFDEKDGQWKWRKDPPTSKRPVEALDSNGKRSRIRIRQSHIMSVREKLLKEFSCLICREVMSLPITTPCAHNFCKSCLEGAFVGKTFLRERSTGGRALRSQKNVLTCPCCPTDISDFLQNLQVNRELLDVIESLKSKIEEGDGASEKLCEEEEVDGEEENEDEDEDEGKGKDGSNANVSSSPVETRKRAKVDDLE | 727 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 840144 | 848507 | - | ClCG11G000670.2 | Cla11g00064 | 283886 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla11g00064 | 727 | Pfam | RING-type zinc-finger | 586 | 640 | IPR027370 | - | |
Cla11g00064 | 727 | MobiDBLite | consensus disorder prediction | 536 | 558 | - | - | |
Cla11g00064 | 727 | ProSiteProfiles | Zinc finger PHD-type profile. | 30 | 81 | IPR019787 | - | |
Cla11g00064 | 727 | PANTHER | FINGER PROTEIN, PUTATIVE-RELATED | 376 | 421 | - | - | |
Cla11g00064 | 727 | PANTHER | FINGER PROTEIN, PUTATIVE-RELATED | 21 | 352 | - | - | |
Cla11g00064 | 727 | ProSitePatterns | Zinc finger PHD-type signature. | 33 | 78 | IPR019786 | - | |
Cla11g00064 | 727 | SUPERFAMILY | FYVE/PHD zinc finger | 25 | 85 | IPR011011 | - | |
Cla11g00064 | 727 | CDD | RING-HC | 163 | 201 | - | - | |
Cla11g00064 | 727 | ProSiteProfiles | YDG domain profile. | 291 | 467 | IPR003105 | - | |
Cla11g00064 | 727 | Pfam | Zinc finger, C3HC4 type (RING finger) | 163 | 201 | IPR018957 | GO:0046872 | |
Cla11g00064 | 727 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 565 | 689 | IPR013083 | - | |
Cla11g00064 | 727 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 2 | 83 | IPR013083 | - | |
Cla11g00064 | 727 | MobiDBLite | consensus disorder prediction | 120 | 149 | - | - | |
Cla11g00064 | 727 | SUPERFAMILY | RING/U-box | 154 | 209 | - | - | |
Cla11g00064 | 727 | SMART | G9a_1 | 286 | 430 | IPR003105 | - | |
Cla11g00064 | 727 | MobiDBLite | consensus disorder prediction | 672 | 727 | - | - | |
Cla11g00064 | 727 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 111 | 229 | IPR013083 | - | |
Cla11g00064 | 727 | ProSiteProfiles | Zinc finger RING-type profile. | 586 | 642 | IPR001841 | - | |
Cla11g00064 | 727 | Pfam | SAD/SRA domain | 294 | 420 | IPR003105 | - | |
Cla11g00064 | 727 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
Cla11g00064 | 727 | MobiDBLite | consensus disorder prediction | 1 | 15 | - | - | |
Cla11g00064 | 727 | SMART | PHD_3 | 32 | 79 | IPR001965 | - | |
Cla11g00064 | 727 | SUPERFAMILY | PUA domain-like | 265 | 424 | IPR015947 | - | |
Cla11g00064 | 727 | Gene3D | - | 262 | 433 | IPR036987 | - | |
Cla11g00064 | 727 | SUPERFAMILY | RING/U-box | 579 | 667 | - | - | |
Cla11g00064 | 727 | PANTHER | FINGER PROTEIN, PUTATIVE-RELATED | 501 | 697 | - | - | |
Cla11g00064 | 727 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED | 21 | 352 | IPR045134 | - | |
Cla11g00064 | 727 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED | 501 | 697 | IPR045134 | - | |
Cla11g00064 | 727 | ProSitePatterns | Zinc finger RING-type signature. | 601 | 610 | IPR017907 | - | |
Cla11g00064 | 727 | SMART | ring_2 | 163 | 201 | IPR001841 | - | |
Cla11g00064 | 727 | SMART | ring_2 | 586 | 642 | IPR001841 | - | |
Cla11g00064 | 727 | ProSiteProfiles | Zinc finger RING-type profile. | 163 | 202 | IPR001841 | - | |
Cla11g00064 | 727 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED | 376 | 421 | IPR045134 | - | |
Cla11g00064 | 727 | MobiDBLite | consensus disorder prediction | 677 | 700 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla04g00257 | Cla-Chr4:8126140 | Cla11g00064 | Cla-Chr11:840144 | 3.50E-72 | dispersed | |
Cla11g00064 | Cla-Chr11:840144 | Cla06g01573 | Cla-Chr6:29289936 | 3.65E-06 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla11g00064 | K10638 | - | csv:101219001 | 1094.34 |