Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla11g00064 ATGATGGAGGAAGATGCCAAAGAACAGCCGAAGGCTACAGAACTTCAGGCAAAGAAAACCCATGTTTCTCAGTTGCCTTGCGACGGTGATGGCATTTGCATGCTCTGCAAGGCCAAGCCTTCTGACTTGGAGACGATCACTTGCAAAACTTGCGTCACCCCTTGGCATGTTAGTTGTCTCTCAAATCCCCCTGAAACCCTTGCATCCACCCTTCAATGGGACTGTCCTGATTGTTCCACCCCTCCCGAAGATGTTCCCCTTCCTTCGCTAGGCAACCATTCACTCCCCACTGCGCCTTCTAGTGACCTTGTTGCTGCGATTCGAGCCATTGAGGCCGATGCCTCCCTTACTGACCGTGAGAAGGCAAAGAAGCGCCAAGAACTTCTCAGCGGAAAGTTGCAATCCGACAAGGATGACCATGATACCAACAAGGAAAAGAAAAAAAAAGGGGATGATGTTTTGGATTTGTTTGACGAGAGATTGAACTGCTCCTTCTGCATGCAGTTACCAGAAAGGCCTGTCACCACCCCATGTGGCCACAATTTCTGCTTAAAATGTTTCCAGAAGTGGATTGGACAAGGAAAGAACACTTGTGCAAAGTGCCGCTGCGTGATTCCCTCCAAAATGGCTAGCCAGCCCCGTATTAACTCCACCCTTGTAGTGGCCATTCGTATGGCTAAATTGTCAAAATCATTTGCTTCTGGAGGACCTCAGAAGGTTTATCATTTTGTCCACAATCAAAATAGACCAGATAAAGCCTATACCACTGATCGGGCACAAAAAAAAGGAAAAGCTAATGCTGCAAGTGGAAAAATATTTGTTACAATTCCATCTGATCATTTTGGTCCTATTCCTGCCGAAAATGATCCTGAGAGAAACCAGGGTGTTCTGGTTGGTGAATGCTGGGAGGATAGGCTAGAATGTCGTCAATGGGGCGCTCACTTTCCACATGTTGCAGGTATAGCGGGACAGTCAAATATTGGTGCACAGTCGGTGGTTCTTTCTGGTGGCTACCAGGATGATGAAGATCATGGGGAGTGGTTTCTCTACACTGGAAGGTCTCTCTTTTCTTGTTCTCTTGCTGCTGCTTCTGTACTCCATGCAGTCTCTTCTGAAGAACTGATGAGTACAGTTGGCGGTCGAGACCTTAGTGGGAACAAGCGTACAAGCAAGGATCAATCTTTTGACCAGAAATTTGAAAAATCAAACAAAGCGCTACAAGTTAGCTGCGCGAAAGGTTATCCTGTTAGGGTTGTTAGAATATATCTTTTCGAAGACAGTTACAGAATCTGCTTTACAACGCCTTGGGTCTCTTGTTTATACATTTTCTATGAGAGTTTATCGCTCAAAATTCCAGAATGGGCGACGAACTACTTAGTTTTCTACTTCCATGGAACTGGAAAAGTTCATGATCTCACAAAGAAAAGCGTTCCTCATATGCTCCAGAGAAGGGATTGCGATGCGACAATGATCCTGCTCCATGGACAAGTTTTTAACTTCAGTGATGAACATGGAGATCGACCTAGACCCTTACCTGCAATTTCAGAGTTGAAAAAAGCCACAGATATTACGGAGAGGAAGGAAGGTCCATCATGGGACTTTGATGAGAAAGACGGTCAATGGAAGTGGAGGAAAGATCCACCAACGAGCAAGAGACCAGTTGAAGCTCTAGATTCTAATGGGAAGAGGTCAAGGATAAGAATTAGGCAATCACATATTATGAGTGTCCGAGAAAAGTTACTGAAAGAGTTTAGCTGCCTTATTTGCCGGGAGGTGATGAGTTTACCAATTACTACGCCTTGTGCCCATAACTTTTGCAAGTCATGCTTGGAAGGTGCTTTTGTAGGGAAGACATTCTTGAGAGAGAGAAGCACCGGTGGACGGGCTCTTAGATCCCAAAAGAATGTCTTGACTTGTCCTTGTTGCCCCACAGATATATCTGATTTTCTACAGAATCTTCAGGTAAATAGAGAGTTGTTGGATGTGATCGAGTCATTAAAAAGTAAGATTGAAGAAGGGGATGGAGCATCTGAGAAGCTGTGTGAAGAAGAAGAGGTAGATGGGGAAGAGGAGAATGAGGATGAAGATGAGGATGAAGGGAAGGGAAAAGATGGAAGCAATGCAAATGTAAGCAGCAGTCCTGTGGAAACGAGGAAGCGAGCAAAGGTGGATGATTTGGAATGA 2184 45.05 MMEEDAKEQPKATELQAKKTHVSQLPCDGDGICMLCKAKPSDLETITCKTCVTPWHVSCLSNPPETLASTLQWDCPDCSTPPEDVPLPSLGNHSLPTAPSSDLVAAIRAIEADASLTDREKAKKRQELLSGKLQSDKDDHDTNKEKKKKGDDVLDLFDERLNCSFCMQLPERPVTTPCGHNFCLKCFQKWIGQGKNTCAKCRCVIPSKMASQPRINSTLVVAIRMAKLSKSFASGGPQKVYHFVHNQNRPDKAYTTDRAQKKGKANAASGKIFVTIPSDHFGPIPAENDPERNQGVLVGECWEDRLECRQWGAHFPHVAGIAGQSNIGAQSVVLSGGYQDDEDHGEWFLYTGRSLFSCSLAAASVLHAVSSEELMSTVGGRDLSGNKRTSKDQSFDQKFEKSNKALQVSCAKGYPVRVVRIYLFEDSYRICFTTPWVSCLYIFYESLSLKIPEWATNYLVFYFHGTGKVHDLTKKSVPHMLQRRDCDATMILLHGQVFNFSDEHGDRPRPLPAISELKKATDITERKEGPSWDFDEKDGQWKWRKDPPTSKRPVEALDSNGKRSRIRIRQSHIMSVREKLLKEFSCLICREVMSLPITTPCAHNFCKSCLEGAFVGKTFLRERSTGGRALRSQKNVLTCPCCPTDISDFLQNLQVNRELLDVIESLKSKIEEGDGASEKLCEEEEVDGEEENEDEDEDEGKGKDGSNANVSSSPVETRKRAKVDDLE 727
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 840144 848507 - ClCG11G000670.2 Cla11g00064 283886
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla11g00064 727 Pfam RING-type zinc-finger 586 640 IPR027370 -
Cla11g00064 727 MobiDBLite consensus disorder prediction 536 558 - -
Cla11g00064 727 ProSiteProfiles Zinc finger PHD-type profile. 30 81 IPR019787 -
Cla11g00064 727 PANTHER FINGER PROTEIN, PUTATIVE-RELATED 376 421 - -
Cla11g00064 727 PANTHER FINGER PROTEIN, PUTATIVE-RELATED 21 352 - -
Cla11g00064 727 ProSitePatterns Zinc finger PHD-type signature. 33 78 IPR019786 -
Cla11g00064 727 SUPERFAMILY FYVE/PHD zinc finger 25 85 IPR011011 -
Cla11g00064 727 CDD RING-HC 163 201 - -
Cla11g00064 727 ProSiteProfiles YDG domain profile. 291 467 IPR003105 -
Cla11g00064 727 Pfam Zinc finger, C3HC4 type (RING finger) 163 201 IPR018957 GO:0046872
Cla11g00064 727 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 565 689 IPR013083 -
Cla11g00064 727 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 83 IPR013083 -
Cla11g00064 727 MobiDBLite consensus disorder prediction 120 149 - -
Cla11g00064 727 SUPERFAMILY RING/U-box 154 209 - -
Cla11g00064 727 SMART G9a_1 286 430 IPR003105 -
Cla11g00064 727 MobiDBLite consensus disorder prediction 672 727 - -
Cla11g00064 727 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 111 229 IPR013083 -
Cla11g00064 727 ProSiteProfiles Zinc finger RING-type profile. 586 642 IPR001841 -
Cla11g00064 727 Pfam SAD/SRA domain 294 420 IPR003105 -
Cla11g00064 727 MobiDBLite consensus disorder prediction 1 20 - -
Cla11g00064 727 MobiDBLite consensus disorder prediction 1 15 - -
Cla11g00064 727 SMART PHD_3 32 79 IPR001965 -
Cla11g00064 727 SUPERFAMILY PUA domain-like 265 424 IPR015947 -
Cla11g00064 727 Gene3D - 262 433 IPR036987 -
Cla11g00064 727 SUPERFAMILY RING/U-box 579 667 - -
Cla11g00064 727 PANTHER FINGER PROTEIN, PUTATIVE-RELATED 501 697 - -
Cla11g00064 727 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED 21 352 IPR045134 -
Cla11g00064 727 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED 501 697 IPR045134 -
Cla11g00064 727 ProSitePatterns Zinc finger RING-type signature. 601 610 IPR017907 -
Cla11g00064 727 SMART ring_2 163 201 IPR001841 -
Cla11g00064 727 SMART ring_2 586 642 IPR001841 -
Cla11g00064 727 ProSiteProfiles Zinc finger RING-type profile. 163 202 IPR001841 -
Cla11g00064 727 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED 376 421 IPR045134 -
Cla11g00064 727 MobiDBLite consensus disorder prediction 677 700 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla04g00257 Cla-Chr4:8126140 Cla11g00064 Cla-Chr11:840144 3.50E-72 dispersed
Cla11g00064 Cla-Chr11:840144 Cla06g01573 Cla-Chr6:29289936 3.65E-06 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla11g00064 K10638 - csv:101219001 1094.34