Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla11g00071 | ATGGCTGCATCTTCTTCCTCAGTTCCACTTTTTGGAGTTCGAGAAGAAGGGCAGATGAGAGGTCAGCAGCAGCAGCAGCAGCAGCCGCCGCCACCACCTCCCTCTAATTCTTCCACTCCTCCAAATCCTCAACAACCCCAAAAGAAAAAGAGAAACCAACCAGGAACTCCAAGCAAAAAAGAAAATATTAGAATTAGAATTTGTGTGTTGATTTCAGATCCAGATGCGGAAGTGATAGCGTTGAGTCCGAAGACGTTAATGGCAACAAACAGATTCATATGTGAAGTATGCAACAAAGGGTTTCAAAGAGAACAAAATCTACAGCTGCATAGAAGAGGACACAATTTGCCATGGAAATTAAAGCAAAAAAGCACAAAAGAGCCAAAAAGAAAAGTGTATTTATGCCCAGAACCCACATGCGTACACCACGACCCATCAAGAGCACTTGGAGATTTAACAGGCATCAAGAAACACTACTCGCGAAAGCACGGCGAGAAGAAATGGAAGTGCGATAAATGCTCTAAACGTTACGCCGTTCAATCCGACTGGAAAGCCCATTCCAAAACCTGTGGCACCAGAGAATATCGTTGCGATTGTGGTACTCTCTTCTCCAGTTTTATTACCCATAGAGCTTTTTGTGATGCATTGGCTCAAGAAAGTGCAAGACATCCTCCAAATTTAGGGTCTGCCATTGGAAGCCATTTATATGGAGGTAATAGCAATGTGGGTTTGACATTATCACAAGTCCCTCAAATTTCTTCTCTTCAAGACCATCCCAATATCCCCCAATCCCCTCACGACGTCCTCCGTCTCGGTGGTGGCCGAACCGGGCAATTCACTCATCTCCTCCCTCCTTCTATTGGCTCTTCCTTCCGACCCCCGCCACAACAAGCAATGCCGTCGTCGAATGCCGCCGCGTTCTTCCTTTCGGACCAAACTAACCAAAGTAGCTTCCATGAAGATCATCATCAAAGCCAATCGCAACAAGGGTTGTTTGGAAACAAAGCCTTTCATGGGCTAATGCAATTCCCTTCTGATATCCAAACCCATGCAAGTAACAACAACAACAATTCTGCCTCAAATCTCTTCAATTTAGGCTTCATTTCAAATCCAACTGGTGATAATACTTCCAATATGAACAGTAACAACGACACCAACACTAACAATAGCAACAGCAGCAGCAACAACAACAACAATCTTCCATCCTCTTTGCTAAACCAATTCAATGGAACAAACAATGGCAACAATGACGGTCCTGCATCTAATATTTTCGCCGTTAACATAATGGGAGATCAAATCAATTCAGCTGCAGTTCCATCTCTCTACAGCACGGCCGCCACGGGAGGATGTAGTAGCGGTACAAGCGGAGGAGCAATCCCACATATGTCAGCGACAGCACTTCTCCAAAAGGCAGCACAATTAGGCTCAACAACGTCGAGTAGCAACACTACAGCAACGTTGCTAAGGACATTTGGTAGCTCCTCAAGCTCAGGCGGGAAGGCGACGGATAGAACACTATTCCCACCAAGCTACGGTGGAGTAGTGTTCGGCGAGAACGAGAGCAATCTCCAGGATTTGATGAACTCGTTCACGACGGGGAGCTCGGGGAGCGGGATGTTTGGGAGCGGGATGAGCTCATTCGGTGGATTTGAAGGGAGTAATCGAAACAATATGGAAAGTATGGAGGATCCAACGAAGTTACAACAGAATTTAAGCACAGTGAGTGTGGGAGGTGGGGCAGATAGGTTAACAAGAGACTTCTTAGGGGTTGGACAGGTTTTGAGAAGTATGAGCGGTGGCGGCGGTTATTCACAAAGAGAACATAAACAGCCACCGCAAGGGATGGTTTTGGAGGGTAATGAGAGTAATACGGCGCCGTCAAGCCAAGCATTTGGCGGTGGAAATGGAAACTACCAGTGA | 1920 | 46.25 | MAASSSSVPLFGVREEGQMRGQQQQQQQPPPPPPSNSSTPPNPQQPQKKKRNQPGTPSKKENIRIRICVLISDPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKSTKEPKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCDKCSKRYAVQSDWKAHSKTCGTREYRCDCGTLFSSFITHRAFCDALAQESARHPPNLGSAIGSHLYGGNSNVGLTLSQVPQISSLQDHPNIPQSPHDVLRLGGGRTGQFTHLLPPSIGSSFRPPPQQAMPSSNAAAFFLSDQTNQSSFHEDHHQSQSQQGLFGNKAFHGLMQFPSDIQTHASNNNNNSASNLFNLGFISNPTGDNTSNMNSNNDTNTNNSNSSSNNNNNLPSSLLNQFNGTNNGNNDGPASNIFAVNIMGDQINSAAVPSLYSTAATGGCSSGTSGGAIPHMSATALLQKAAQLGSTTSSSNTTATLLRTFGSSSSSGGKATDRTLFPPSYGGVVFGENESNLQDLMNSFTTGSSGSGMFGSGMSSFGGFEGSNRNNMESMEDPTKLQQNLSTVSVGGGADRLTRDFLGVGQVLRSMSGGGGYSQREHKQPPQGMVLEGNESNTAPSSQAFGGGNGNYQ | 639 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 967512 | 970318 | - | ClCG11G000740.2 | Cla11g00071 | 283893 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla11g00071 | 639 | MobiDBLite | consensus disorder prediction | 26 | 41 | - | - | |
Cla11g00071 | 639 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 92 | 114 | IPR013087 | - | |
Cla11g00071 | 639 | SUPERFAMILY | beta-beta-alpha zinc fingers | 91 | 188 | IPR036236 | - | |
Cla11g00071 | 639 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 94 | 114 | IPR013087 | - | |
Cla11g00071 | 639 | Gene3D | Classic Zinc Finger | 146 | 221 | - | - | |
Cla11g00071 | 639 | MobiDBLite | consensus disorder prediction | 373 | 416 | - | - | |
Cla11g00071 | 639 | Gene3D | Classic Zinc Finger | 72 | 140 | - | - | |
Cla11g00071 | 639 | SMART | c2h2final6 | 133 | 163 | IPR013087 | - | |
Cla11g00071 | 639 | SMART | c2h2final6 | 92 | 114 | IPR013087 | - | |
Cla11g00071 | 639 | SMART | c2h2final6 | 168 | 188 | IPR013087 | - | |
Cla11g00071 | 639 | MobiDBLite | consensus disorder prediction | 616 | 639 | - | - | |
Cla11g00071 | 639 | Pfam | Zinc-finger double-stranded RNA-binding | 92 | 114 | IPR022755 | - | |
Cla11g00071 | 639 | MobiDBLite | consensus disorder prediction | 598 | 639 | - | - | |
Cla11g00071 | 639 | PANTHER | ZINC FINGER PROTEIN, PUTATIVE-RELATED | 1 | 607 | - | - | |
Cla11g00071 | 639 | MobiDBLite | consensus disorder prediction | 1 | 61 | - | - | |
Cla11g00071 | 639 | PANTHER | SERINE/THREONINE-PROTEIN KINASE RIO | 1 | 607 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla11g00071 | Cla-Chr11:967512 | Cla02g01009 | Cla-Chr2:18811623 | 1.46E-103 | dispersed | |
Cla11g00071 | Cla-Chr11:967512 | Cla10g01937 | Cla-Chr10:35207330 | 2.32E-102 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
61980 | PF12171 | zf-C2H2_jaz | 4.00E-05 | CL0361 | Cla | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla11g00071 | K25870 | - | csv:101219959 | 978.778 |