Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla11g00071 ATGGCTGCATCTTCTTCCTCAGTTCCACTTTTTGGAGTTCGAGAAGAAGGGCAGATGAGAGGTCAGCAGCAGCAGCAGCAGCAGCCGCCGCCACCACCTCCCTCTAATTCTTCCACTCCTCCAAATCCTCAACAACCCCAAAAGAAAAAGAGAAACCAACCAGGAACTCCAAGCAAAAAAGAAAATATTAGAATTAGAATTTGTGTGTTGATTTCAGATCCAGATGCGGAAGTGATAGCGTTGAGTCCGAAGACGTTAATGGCAACAAACAGATTCATATGTGAAGTATGCAACAAAGGGTTTCAAAGAGAACAAAATCTACAGCTGCATAGAAGAGGACACAATTTGCCATGGAAATTAAAGCAAAAAAGCACAAAAGAGCCAAAAAGAAAAGTGTATTTATGCCCAGAACCCACATGCGTACACCACGACCCATCAAGAGCACTTGGAGATTTAACAGGCATCAAGAAACACTACTCGCGAAAGCACGGCGAGAAGAAATGGAAGTGCGATAAATGCTCTAAACGTTACGCCGTTCAATCCGACTGGAAAGCCCATTCCAAAACCTGTGGCACCAGAGAATATCGTTGCGATTGTGGTACTCTCTTCTCCAGTTTTATTACCCATAGAGCTTTTTGTGATGCATTGGCTCAAGAAAGTGCAAGACATCCTCCAAATTTAGGGTCTGCCATTGGAAGCCATTTATATGGAGGTAATAGCAATGTGGGTTTGACATTATCACAAGTCCCTCAAATTTCTTCTCTTCAAGACCATCCCAATATCCCCCAATCCCCTCACGACGTCCTCCGTCTCGGTGGTGGCCGAACCGGGCAATTCACTCATCTCCTCCCTCCTTCTATTGGCTCTTCCTTCCGACCCCCGCCACAACAAGCAATGCCGTCGTCGAATGCCGCCGCGTTCTTCCTTTCGGACCAAACTAACCAAAGTAGCTTCCATGAAGATCATCATCAAAGCCAATCGCAACAAGGGTTGTTTGGAAACAAAGCCTTTCATGGGCTAATGCAATTCCCTTCTGATATCCAAACCCATGCAAGTAACAACAACAACAATTCTGCCTCAAATCTCTTCAATTTAGGCTTCATTTCAAATCCAACTGGTGATAATACTTCCAATATGAACAGTAACAACGACACCAACACTAACAATAGCAACAGCAGCAGCAACAACAACAACAATCTTCCATCCTCTTTGCTAAACCAATTCAATGGAACAAACAATGGCAACAATGACGGTCCTGCATCTAATATTTTCGCCGTTAACATAATGGGAGATCAAATCAATTCAGCTGCAGTTCCATCTCTCTACAGCACGGCCGCCACGGGAGGATGTAGTAGCGGTACAAGCGGAGGAGCAATCCCACATATGTCAGCGACAGCACTTCTCCAAAAGGCAGCACAATTAGGCTCAACAACGTCGAGTAGCAACACTACAGCAACGTTGCTAAGGACATTTGGTAGCTCCTCAAGCTCAGGCGGGAAGGCGACGGATAGAACACTATTCCCACCAAGCTACGGTGGAGTAGTGTTCGGCGAGAACGAGAGCAATCTCCAGGATTTGATGAACTCGTTCACGACGGGGAGCTCGGGGAGCGGGATGTTTGGGAGCGGGATGAGCTCATTCGGTGGATTTGAAGGGAGTAATCGAAACAATATGGAAAGTATGGAGGATCCAACGAAGTTACAACAGAATTTAAGCACAGTGAGTGTGGGAGGTGGGGCAGATAGGTTAACAAGAGACTTCTTAGGGGTTGGACAGGTTTTGAGAAGTATGAGCGGTGGCGGCGGTTATTCACAAAGAGAACATAAACAGCCACCGCAAGGGATGGTTTTGGAGGGTAATGAGAGTAATACGGCGCCGTCAAGCCAAGCATTTGGCGGTGGAAATGGAAACTACCAGTGA 1920 46.25 MAASSSSVPLFGVREEGQMRGQQQQQQQPPPPPPSNSSTPPNPQQPQKKKRNQPGTPSKKENIRIRICVLISDPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKSTKEPKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCDKCSKRYAVQSDWKAHSKTCGTREYRCDCGTLFSSFITHRAFCDALAQESARHPPNLGSAIGSHLYGGNSNVGLTLSQVPQISSLQDHPNIPQSPHDVLRLGGGRTGQFTHLLPPSIGSSFRPPPQQAMPSSNAAAFFLSDQTNQSSFHEDHHQSQSQQGLFGNKAFHGLMQFPSDIQTHASNNNNNSASNLFNLGFISNPTGDNTSNMNSNNDTNTNNSNSSSNNNNNLPSSLLNQFNGTNNGNNDGPASNIFAVNIMGDQINSAAVPSLYSTAATGGCSSGTSGGAIPHMSATALLQKAAQLGSTTSSSNTTATLLRTFGSSSSSGGKATDRTLFPPSYGGVVFGENESNLQDLMNSFTTGSSGSGMFGSGMSSFGGFEGSNRNNMESMEDPTKLQQNLSTVSVGGGADRLTRDFLGVGQVLRSMSGGGGYSQREHKQPPQGMVLEGNESNTAPSSQAFGGGNGNYQ 639
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 967512 970318 - ClCG11G000740.2 Cla11g00071 283893
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla11g00071 639 MobiDBLite consensus disorder prediction 26 41 - -
Cla11g00071 639 ProSiteProfiles Zinc finger C2H2 type domain profile. 92 114 IPR013087 -
Cla11g00071 639 SUPERFAMILY beta-beta-alpha zinc fingers 91 188 IPR036236 -
Cla11g00071 639 ProSitePatterns Zinc finger C2H2 type domain signature. 94 114 IPR013087 -
Cla11g00071 639 Gene3D Classic Zinc Finger 146 221 - -
Cla11g00071 639 MobiDBLite consensus disorder prediction 373 416 - -
Cla11g00071 639 Gene3D Classic Zinc Finger 72 140 - -
Cla11g00071 639 SMART c2h2final6 133 163 IPR013087 -
Cla11g00071 639 SMART c2h2final6 92 114 IPR013087 -
Cla11g00071 639 SMART c2h2final6 168 188 IPR013087 -
Cla11g00071 639 MobiDBLite consensus disorder prediction 616 639 - -
Cla11g00071 639 Pfam Zinc-finger double-stranded RNA-binding 92 114 IPR022755 -
Cla11g00071 639 MobiDBLite consensus disorder prediction 598 639 - -
Cla11g00071 639 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 1 607 - -
Cla11g00071 639 MobiDBLite consensus disorder prediction 1 61 - -
Cla11g00071 639 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 607 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla11g00071 Cla-Chr11:967512 Cla02g01009 Cla-Chr2:18811623 1.46E-103 dispersed
Cla11g00071 Cla-Chr11:967512 Cla10g01937 Cla-Chr10:35207330 2.32E-102 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61980 PF12171 zf-C2H2_jaz 4.00E-05 CL0361 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla11g00071 K25870 - csv:101219959 978.778