Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla11g00076 ATGCTTCTGTTTAGACCGTTTGCTGATTTTGTTACCTTGGTTGGTGGCAGTGCAGACAAGATGTCTCGGAAGGGTTTGATGGAACAAGACTTAAAGAAATTGGATGTGACAAAGCTCCATCCGCTCTCGCCAGAGGTTATATCTCGTCAAGCTACCATTAATATTGGTACTATTGGTCATGTGGCACATGGGAAGTCTACCGTTGTAAAAGCAATTTCAGGAGTCCAGACTGTACGTTTCAAGAATGAGCTGGAGCGTAACATTACTATTAAGCTGGGGTATGCTAATGCAAAGATATACAAATGTGAAGATGACAAGTGCCCTCGGCCTATGTGCTACAAGGCATATGGAAGTGGAAAGGAAGACAGTCCTTTATGTGATGTGCTTGGGTTTGAAAATTGCAGGATGAAACTATTGCGACATGTATCCTTTGTCGACTGCCCAGGTCACGATATTCTCATGGCTACCATGCTTAACGGAGCAGCCATTATGGATGGAGCATTACTTCTGATAGCTGCCAATGAAAGCTGCCCTCAACCTCAAACTTCTGAGCACCTTGCTGCTGTTGAAATTATGCGCCTTCAGCATATTATAATCCTCCAGAATAAAGTTGATCTTATTCAGGAAAATGTAGCAATCAATCAGCACGAAGCTATTCAAAAGTTCATTCAGGGAACTGTTGCCGATGGTGCACCAGTAGTACCAATTTCTGCTCAGCTGAAGTATAACATTGATGTTGTTTGCGAGTACATAGTTAAAAAGATTCCAATTCCAGAAAGGAATTTTGTCTCGCCTCCTAATATGATCGTGATTCGTTCTTTTGACGTTAACAAACCTGGATTTGAAGTTGATGAGATCAAAGGTGGTGTGGCTGGTGGTAGCATACTACGGGGTGTTTTAAAGGTGAATCAATTTATTGAAGTTCGCCCGGGTATTGTTGTTAAGGATGAAAGTGGTAACATCAAGTGCACCCCAATATACTCTAGGATTGTTTCTTTGTATGCGGAGCAAAATGAGCTGCAATTTGCAGTCCCTGGAGGTCTCATTGGGGTTGGCACGACCATGGATCCCACTTTGACTCGTGCTGACAGATTGGTCGGTCAGGTTCTTGGGGAAGTTGGATCACTTCCTGATGTTTTTGTTGAGCTAGAGTCAGTGGGTATGCCAATTCTCTTTTTGAATGGTTGCTTTGAGTTGTTGGAGTTTCTCCGTAGGATTTATAGAGGTTTTGATACTTGGGAGGAGGAGGAGATTTGGTCCAAGTTAAATGCTTCTCTTCCGGTAAACTTTTTCCTTTTGCGGCGGCTCCTAGGTGTGAGGACAAAAGGATCAGAAAGGCAGGGAAAAGTATCGAAACTGGCCAAGGGGGAGATTTTAATGTTGAACATAGGATCCATGTCTACGGGAGCTAGAGTACTTGCAGTGAAGAACGATTTAGCAAAGTTGCAGCTTACATCTCCTGTTTGCACCAGCAAAGGGGAGAAGATTGCTCTAAGTCGTCGAGTCGAGAAGCACTGGCGTCTTATTGGCTGGGGTCAAATTCAAGCTGGAACGACTCTCGATGTCCCTCCCTGCCCCATTTGA 1584 43.94 MLLFRPFADFVTLVGGSADKMSRKGLMEQDLKKLDVTKLHPLSPEVISRQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDKCPRPMCYKAYGSGKEDSPLCDVLGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQNKVDLIQENVAINQHEAIQKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKIPIPERNFVSPPNMIVIRSFDVNKPGFEVDEIKGGVAGGSILRGVLKVNQFIEVRPGIVVKDESGNIKCTPIYSRIVSLYAEQNELQFAVPGGLIGVGTTMDPTLTRADRLVGQVLGEVGSLPDVFVELESVGMPILFLNGCFELLEFLRRIYRGFDTWEEEEIWSKLNASLPVNFFLLRRLLGVRTKGSERQGKVSKLAKGEILMLNIGSMSTGARVLAVKNDLAKLQLTSPVCTSKGEKIALSRRVEKHWRLIGWGQIQAGTTLDVPPCPI 527
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1033255 1038888 - ClCG11G000780.2 Cla11g00076 283898
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla11g00076 527 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 3 FAMILY MEMBER 21 385 - -
Cla11g00076 527 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 3 FAMILY MEMBER 425 526 - -
Cla11g00076 527 Gene3D - 50 260 IPR027417 -
Cla11g00076 527 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 50 259 IPR000795 GO:0003924|GO:0005525
Cla11g00076 527 CDD eIF2_gamma_II 261 374 IPR044127 GO:0000049
Cla11g00076 527 SUPERFAMILY Translation proteins 260 374 IPR009000 -
Cla11g00076 527 Gene3D Translation factors 414 522 - -
Cla11g00076 527 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 3 21 385 - -
Cla11g00076 527 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 3 425 526 - -
Cla11g00076 527 Pfam Elongation factor Tu GTP binding domain 52 256 IPR000795 GO:0003924|GO:0005525
Cla11g00076 527 Gene3D Translation factors 262 376 - -
Cla11g00076 527 CDD eIF2_gamma 53 260 IPR044128 GO:0005525
Cla11g00076 527 Pfam Elongation factor Tu domain 2 288 370 IPR004161 GO:0005525
Cla11g00076 527 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 43 262 IPR027417 -
Cla11g00076 527 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 425 515 IPR009001 -
Cla11g00076 527 PRINTS GTP-binding elongation factor signature 159 170 IPR000795 GO:0003924|GO:0005525
Cla11g00076 527 PRINTS GTP-binding elongation factor signature 197 206 IPR000795 GO:0003924|GO:0005525
Cla11g00076 527 PRINTS GTP-binding elongation factor signature 143 153 IPR000795 GO:0003924|GO:0005525
Cla11g00076 527 PRINTS GTP-binding elongation factor signature 54 67 IPR000795 GO:0003924|GO:0005525
Cla11g00076 527 CDD eIF2_gamma_III 417 514 IPR015256 -
Cla11g00076 527 Pfam Initiation factor eIF2 gamma, C terminal 426 514 IPR015256 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla11g00076 K03242 - csv:116403970 892.108