Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla11g00084 ATGTGCCATTCCACCGACTCCACGGCCTTACAGGACTTCCGCCGCAGTTTTAGTTCTCAAATCGATGGATTGCACACCAACTGTTCGACGAATTGCTGCACTTGTACTGGCGTCACTTGTGATTCTTCTGGGAGGGTTGTGAAGATTGAACTTGGTGGGAGAAAGCTAGTTGGTCGACTACCAATCTCAATTGCAAGATTGGAACGCCTCAGAGTTCTTAATTTGTCCTCTAATTCCCTCACTGGGTCTATTCCTTTGGCTCTGTTTCAGCTCCCATACTTGGAAGTTCTTGATCTTAGCTTCAATCAGTTCTTGGGAAGCATCTCAACAGGTAACATCGATTTGCCTTCCCTTCGGATTCTTAATGTTTCTCATAATTCCTTCAACGGTGTTCTTCCATTTGGGGTTTGTGTCAACTCCTCTAGAATTGAGATTCTGAATCTGGGTTTCAATGATTTCGTTGGTATGTTTCCTTTTCAACTTGCTGAATGTGTTTCCTTGAAGAGACTGCATCTGGAATCGAATTTTATCAGTGGTAGGATACCTGATGAGGTTTTTGGATTGAGGAAATTGACCCATTTGTGTGTTCAGAACAACAAGCTTTCTGGTTCTTTGAGTAGTGTTGTTGGGAATCTAACAAGCCTTGTTCGGTTGGATTTGTCATCTAATGAGTTTTTTGGGGAAATTCCTGATGTTTTTTACGACTCTGTGAATTTGAGTTACTTTGTTGCTGAGTCTAATAGGTTTAGTGGGAATATTCCCAATTCCTTGTCACACTCTGCTTCACTTACTGTCCTAAATTTGAGGAACAATTCAATAGGGGGAACTCTTGATCTTAATTGTACAGCAATGAGGAGCCTGGTTACACTTGATTTAGGCTCTAATAGGTTTCATGGATCTATACCTAGTAATCTTCCCTCTTGTACCAAACTGAGAAGCATAAACCTTGCTAGGAACAAGCTTGGCGGTCAGATCCCTGAGAGCTTTAGACACTTTCAGAGCCTATCATATTTATCACTTACGAACACGAGCATTGTTAATGTTTCATCTGCTCTTAATGTCTTGCAACATTGTCAAAATTTGAGAACTGTGGTTCTAACCTTTAACTTCCATGGTGAAGTGTTGGGGGATGATCCTAACTTGAATTTCAACAGCCTCCAAGTTTTTATAATTGCTAATTGTGGATTGAAGGGAATGATACCCCAGTGGTTGAGAGGTTCTAATAAGTTGCAGATGTTGGATTTGTCATGGAACCGTCTTGGAGGAAATATTCCATCCTGGTTTGGAGAGTTTCAGTTCTTGTTTTACTTGGATTTATCTAATAATTCATTCATCGGAGGTATCCCAAAAGAGATGACTGTAATGCAGAGTTACATTGACAGAAACTTCTTGCTTGATGAAACTGCCTCACCAGACTTTTCTCTTTTCGTGAAAAGAAATGGAACTGGATTGCAGTATAATCAATTATGGAGACTTCCACCAACTTTGAACCTCAGTCTCAACAATCTCAGTGGACAAATCTGGCCAGAGTTTGGAAATCTTAAGGAGATTCTAGTTCTTGATTTGAAAATCAACAGTTTGTCAGGATCAATTCCGAGCAGCCTCTCTGGGATGGTTAATTTAGAAACTCTAGATCTTTCTCACAACAATCTTTCAGGAATAATTCCACCTTCACTGCAAAAGCTCAATTTTTTGTCCAAGTTCAGTGTTGCATACAATCAATTACATGGGACGATTCTTAAAGGAGGTCAGTTTCATACCTTTGGTAACTCTAGCTTTGAAGGAAACAATTTTTGTGTCCAAGACGACCTCTGTGCATCAATTGACCGAGATCCTCTCAGAGTATCCCGCAAATCAAGAACGGTCAAGGGGTCTCTTATAGGTATAATTCTCGGTATTATCTTTGGAATCATTTTTCTTGCAACACTTGTAGTTGTGTTTATGCTTCGGACACCACGGGGAAGAGTTGGAGATCCTGAAAACGAAGTGTCTAACATTGACAATAATGACTCGGAGGAAGTTAAGGCAGGATTGGTAGTTTTTTTCCAAAACAACAACAATGGAAGTCTCTCGCTGGATGATATTTTGAAATCGACGAATGACTTTGATCAAGAAAATATCATTGGATGTGGGGGTTTTGGTTTAGTTTACAAAGCCACCCTTCCTGATGGTAGAAAGGTCGCTATAAAACGGTTGTCTGGCGATTGTGGTCAAATGGACAGAGAATTTCAAGCAGAAATCGAAACGCTTTCACGTGCTCAGCATCCAAATCTTGTTCTTCTTCAGGGTTATTGTATGTATAAGAATGACAGGCTTTTGATTTATTCGTACATGGAGAATGGTAGCTTAGATTACTGGTTACATGAAAAACCTGATGGCCCATCTTGCCTCGACTGGGATACCAGACTGCAGATTGCCCGAGGGGCTGCTGGGGGGCTGGCTTATTTGCATCAATCCTGTGAACCCCATATCCTCCATCGAGATATAAAGTCGAGTAACATTCTTTTAGACGAAAATTTTAGAGCTCATTTAGCTGATTTTGGTCTTGCTAGACTTATTCTTCCCTATGATACCCACGTAACAACCGATCTTGTCGGTACCTTGGGCTACATTCCACCCGAGTACGGACAATCCTCAGTCGCGACCTACAAAGGGGATGTATACAGTTTTGGAGTTGTTTTATTAGAGCTTTTGACTGGTAAAAGGCCAATCGATATGTGCAGACCGAAAGGACTTCGAGACTTGATCTCTTGGGTGTTCCAAATGAGGAAAGACACAAAAGTAAGTGAAGTGTTCGACCCATTAGTATACGACAAGAAGAATGAGACATCGATGGCCGAAGTTCTTGATATAGCATGTCTTTGCTTATGTAAGGAACCTAAAGAGAGGCCTTCTACTCAACAGCTAGTTTCTTGGCTTGATAAAGTAGATATCAATAATATCCATGGACTAGTGATATCAATGATAGATGTTAGGTGGGTAATTTCGATACAGGGTTTTTCAGCTATGGCGCCTAAAGCTGACAGCACCAAAAATGCTGATCCCAGAGCTCAAGCCCTGAAGACTGCCAAGGCAGTCAAGTCTGGGCCAACTTTCAAGAAGAAGGCTAAGAAAATCAGGACGTCGGTCACATTCCATCGCCCGAAAACATTGAAGAAGGATAGGAATCCCAAGTATCCTCGAATCAGTGTGACTCCTAGGAACAAGTTGGATCAATATCAAATTCTTAAATATCCACTAACCACTGAGTCTGCGATGAAGAAAATTGAGGATAATAACACCCTTGTTTTTATTGTCGATATTCGTGCTGACAAGAAAAAGATTAAAGATGCGGTGAAGAAGATGTATGACATTCAGACCAAGAAAGTCAACACTCTAATCAGGCCTGATGGAACAAAGAAGGCATACGTTAGGTTAACCCCAGACTACGACGCTTTGGACGTGGCGAACAAGATTGGAATTATCTAA 3468 41.0 MCHSTDSTALQDFRRSFSSQIDGLHTNCSTNCCTCTGVTCDSSGRVVKIELGGRKLVGRLPISIARLERLRVLNLSSNSLTGSIPLALFQLPYLEVLDLSFNQFLGSISTGNIDLPSLRILNVSHNSFNGVLPFGVCVNSSRIEILNLGFNDFVGMFPFQLAECVSLKRLHLESNFISGRIPDEVFGLRKLTHLCVQNNKLSGSLSSVVGNLTSLVRLDLSSNEFFGEIPDVFYDSVNLSYFVAESNRFSGNIPNSLSHSASLTVLNLRNNSIGGTLDLNCTAMRSLVTLDLGSNRFHGSIPSNLPSCTKLRSINLARNKLGGQIPESFRHFQSLSYLSLTNTSIVNVSSALNVLQHCQNLRTVVLTFNFHGEVLGDDPNLNFNSLQVFIIANCGLKGMIPQWLRGSNKLQMLDLSWNRLGGNIPSWFGEFQFLFYLDLSNNSFIGGIPKEMTVMQSYIDRNFLLDETASPDFSLFVKRNGTGLQYNQLWRLPPTLNLSLNNLSGQIWPEFGNLKEILVLDLKINSLSGSIPSSLSGMVNLETLDLSHNNLSGIIPPSLQKLNFLSKFSVAYNQLHGTILKGGQFHTFGNSSFEGNNFCVQDDLCASIDRDPLRVSRKSRTVKGSLIGIILGIIFGIIFLATLVVVFMLRTPRGRVGDPENEVSNIDNNDSEEVKAGLVVFFQNNNNGSLSLDDILKSTNDFDQENIIGCGGFGLVYKATLPDGRKVAIKRLSGDCGQMDREFQAEIETLSRAQHPNLVLLQGYCMYKNDRLLIYSYMENGSLDYWLHEKPDGPSCLDWDTRLQIARGAAGGLAYLHQSCEPHILHRDIKSSNILLDENFRAHLADFGLARLILPYDTHVTTDLVGTLGYIPPEYGQSSVATYKGDVYSFGVVLLELLTGKRPIDMCRPKGLRDLISWVFQMRKDTKVSEVFDPLVYDKKNETSMAEVLDIACLCLCKEPKERPSTQQLVSWLDKVDINNIHGLVISMIDVRWVISIQGFSAMAPKADSTKNADPRAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRISVTPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 1155
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1098058 1106686 - ClCG11G000840.2 Cla11g00084 283906
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla11g00084 1155 Gene3D Phosphorylase Kinase; domain 1 662 777 - -
Cla11g00084 1155 PANTHER OSJNBB0004A17.8 PROTEIN 72 134 - -
Cla11g00084 1155 SUPERFAMILY Protein kinase-like (PK-like) 686 973 IPR011009 -
Cla11g00084 1155 SUPERFAMILY RNI-like 140 449 - -
Cla11g00084 1155 PANTHER OSJNBB0004A17.8 PROTEIN 138 976 - -
Cla11g00084 1155 ProSitePatterns Ribosomal protein L23 signature. 1133 1148 IPR001014 -
Cla11g00084 1155 ProSiteProfiles Protein kinase domain profile. 702 985 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla11g00084 1155 SUPERFAMILY L domain-like 484 599 - -
Cla11g00084 1155 PRINTS Leucine-rich repeat signature 538 551 - -
Cla11g00084 1155 PRINTS Leucine-rich repeat signature 70 83 - -
Cla11g00084 1155 Gene3D Ribonuclease Inhibitor 281 607 IPR032675 -
Cla11g00084 1155 PANTHER RECEPTOR-LIKE PROTEIN 55 2 61 - -
Cla11g00084 1155 PANTHER RECEPTOR-LIKE PROTEIN 55 72 134 - -
Cla11g00084 1155 SUPERFAMILY Ribosomal proteins S24e, L23 and L15e 1073 1148 IPR012678 GO:0003735|GO:0005840|GO:0006412
Cla11g00084 1155 Pfam Ribosomal protein L23 1075 1136 IPR013025 GO:0003735|GO:0005840|GO:0006412
Cla11g00084 1155 Pfam Ribosomal protein L23, N-terminal domain 1016 1064 IPR005633 -
Cla11g00084 1155 Pfam Leucine Rich Repeat 409 429 IPR001611 GO:0005515
Cla11g00084 1155 Pfam Leucine Rich Repeat 540 562 IPR001611 GO:0005515
Cla11g00084 1155 SUPERFAMILY L domain-like 42 133 - -
Cla11g00084 1155 PANTHER OSJNBB0004A17.8 PROTEIN 2 61 - -
Cla11g00084 1155 Hamap 50S ribosomal protein L23 [rplW]. 1075 1155 IPR013025 GO:0003735|GO:0005840|GO:0006412
Cla11g00084 1155 ProSitePatterns Serine/Threonine protein kinases active-site signature. 824 836 IPR008271 GO:0004672|GO:0006468
Cla11g00084 1155 SMART serkin_6 702 973 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla11g00084 1155 PANTHER RECEPTOR-LIKE PROTEIN 55 138 976 - -
Cla11g00084 1155 ProSiteProfiles Leucine-rich repeat profile. 540 561 IPR001611 GO:0005515
Cla11g00084 1155 Pfam Protein kinase domain 703 971 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla11g00084 1155 ProSitePatterns Protein kinases ATP-binding region signature. 708 730 IPR017441 GO:0005524
Cla11g00084 1155 Gene3D Ribonuclease Inhibitor 3 280 IPR032675 -
Cla11g00084 1155 Gene3D Transferase(Phosphotransferase) domain 1 778 983 - -
Cla11g00084 1155 SMART LRR_typ_2 67 91 IPR003591 -
Cla11g00084 1155 SMART LRR_typ_2 115 139 IPR003591 -
Cla11g00084 1155 SMART LRR_typ_2 188 211 IPR003591 -
Cla11g00084 1155 SMART LRR_typ_2 212 235 IPR003591 -
Cla11g00084 1155 SMART LRR_typ_2 538 561 IPR003591 -
Cla11g00084 1155 SMART LRR_typ_2 284 308 IPR003591 -
Cla11g00084 1155 Pfam Leucine rich repeat 285 345 IPR001611 GO:0005515
Cla11g00084 1155 Pfam Leucine rich repeat 69 127 IPR001611 GO:0005515
Cla11g00084 1155 Gene3D - 1036 1155 IPR012677 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00690 Cla-Chr1:8128779 Cla11g00084 Cla-Chr11:1098058 1.46E-165 dispersed
Cla05g01002 Cla-Chr5:10080430 Cla11g00084 Cla-Chr11:1098058 0 dispersed
Cla07g00288 Cla-Chr7:3183627 Cla11g00084 Cla-Chr11:1098058 3.76E-88 dispersed
Cla09g00322 Cla-Chr9:3110777 Cla11g00084 Cla-Chr11:1098058 0 dispersed
Cla09g01968 Cla-Chr9:37301609 Cla11g00084 Cla-Chr11:1098058 3.72E-75 dispersed
Cla11g00084 Cla-Chr11:1098058 Cla05g00864 Cla-Chr5:8569756 1.63E-42 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80907 PF00069 Pkinase 7.80E-46 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla11g00084 - - bhj:120069286 1693.32