Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla11g00084 | ATGTGCCATTCCACCGACTCCACGGCCTTACAGGACTTCCGCCGCAGTTTTAGTTCTCAAATCGATGGATTGCACACCAACTGTTCGACGAATTGCTGCACTTGTACTGGCGTCACTTGTGATTCTTCTGGGAGGGTTGTGAAGATTGAACTTGGTGGGAGAAAGCTAGTTGGTCGACTACCAATCTCAATTGCAAGATTGGAACGCCTCAGAGTTCTTAATTTGTCCTCTAATTCCCTCACTGGGTCTATTCCTTTGGCTCTGTTTCAGCTCCCATACTTGGAAGTTCTTGATCTTAGCTTCAATCAGTTCTTGGGAAGCATCTCAACAGGTAACATCGATTTGCCTTCCCTTCGGATTCTTAATGTTTCTCATAATTCCTTCAACGGTGTTCTTCCATTTGGGGTTTGTGTCAACTCCTCTAGAATTGAGATTCTGAATCTGGGTTTCAATGATTTCGTTGGTATGTTTCCTTTTCAACTTGCTGAATGTGTTTCCTTGAAGAGACTGCATCTGGAATCGAATTTTATCAGTGGTAGGATACCTGATGAGGTTTTTGGATTGAGGAAATTGACCCATTTGTGTGTTCAGAACAACAAGCTTTCTGGTTCTTTGAGTAGTGTTGTTGGGAATCTAACAAGCCTTGTTCGGTTGGATTTGTCATCTAATGAGTTTTTTGGGGAAATTCCTGATGTTTTTTACGACTCTGTGAATTTGAGTTACTTTGTTGCTGAGTCTAATAGGTTTAGTGGGAATATTCCCAATTCCTTGTCACACTCTGCTTCACTTACTGTCCTAAATTTGAGGAACAATTCAATAGGGGGAACTCTTGATCTTAATTGTACAGCAATGAGGAGCCTGGTTACACTTGATTTAGGCTCTAATAGGTTTCATGGATCTATACCTAGTAATCTTCCCTCTTGTACCAAACTGAGAAGCATAAACCTTGCTAGGAACAAGCTTGGCGGTCAGATCCCTGAGAGCTTTAGACACTTTCAGAGCCTATCATATTTATCACTTACGAACACGAGCATTGTTAATGTTTCATCTGCTCTTAATGTCTTGCAACATTGTCAAAATTTGAGAACTGTGGTTCTAACCTTTAACTTCCATGGTGAAGTGTTGGGGGATGATCCTAACTTGAATTTCAACAGCCTCCAAGTTTTTATAATTGCTAATTGTGGATTGAAGGGAATGATACCCCAGTGGTTGAGAGGTTCTAATAAGTTGCAGATGTTGGATTTGTCATGGAACCGTCTTGGAGGAAATATTCCATCCTGGTTTGGAGAGTTTCAGTTCTTGTTTTACTTGGATTTATCTAATAATTCATTCATCGGAGGTATCCCAAAAGAGATGACTGTAATGCAGAGTTACATTGACAGAAACTTCTTGCTTGATGAAACTGCCTCACCAGACTTTTCTCTTTTCGTGAAAAGAAATGGAACTGGATTGCAGTATAATCAATTATGGAGACTTCCACCAACTTTGAACCTCAGTCTCAACAATCTCAGTGGACAAATCTGGCCAGAGTTTGGAAATCTTAAGGAGATTCTAGTTCTTGATTTGAAAATCAACAGTTTGTCAGGATCAATTCCGAGCAGCCTCTCTGGGATGGTTAATTTAGAAACTCTAGATCTTTCTCACAACAATCTTTCAGGAATAATTCCACCTTCACTGCAAAAGCTCAATTTTTTGTCCAAGTTCAGTGTTGCATACAATCAATTACATGGGACGATTCTTAAAGGAGGTCAGTTTCATACCTTTGGTAACTCTAGCTTTGAAGGAAACAATTTTTGTGTCCAAGACGACCTCTGTGCATCAATTGACCGAGATCCTCTCAGAGTATCCCGCAAATCAAGAACGGTCAAGGGGTCTCTTATAGGTATAATTCTCGGTATTATCTTTGGAATCATTTTTCTTGCAACACTTGTAGTTGTGTTTATGCTTCGGACACCACGGGGAAGAGTTGGAGATCCTGAAAACGAAGTGTCTAACATTGACAATAATGACTCGGAGGAAGTTAAGGCAGGATTGGTAGTTTTTTTCCAAAACAACAACAATGGAAGTCTCTCGCTGGATGATATTTTGAAATCGACGAATGACTTTGATCAAGAAAATATCATTGGATGTGGGGGTTTTGGTTTAGTTTACAAAGCCACCCTTCCTGATGGTAGAAAGGTCGCTATAAAACGGTTGTCTGGCGATTGTGGTCAAATGGACAGAGAATTTCAAGCAGAAATCGAAACGCTTTCACGTGCTCAGCATCCAAATCTTGTTCTTCTTCAGGGTTATTGTATGTATAAGAATGACAGGCTTTTGATTTATTCGTACATGGAGAATGGTAGCTTAGATTACTGGTTACATGAAAAACCTGATGGCCCATCTTGCCTCGACTGGGATACCAGACTGCAGATTGCCCGAGGGGCTGCTGGGGGGCTGGCTTATTTGCATCAATCCTGTGAACCCCATATCCTCCATCGAGATATAAAGTCGAGTAACATTCTTTTAGACGAAAATTTTAGAGCTCATTTAGCTGATTTTGGTCTTGCTAGACTTATTCTTCCCTATGATACCCACGTAACAACCGATCTTGTCGGTACCTTGGGCTACATTCCACCCGAGTACGGACAATCCTCAGTCGCGACCTACAAAGGGGATGTATACAGTTTTGGAGTTGTTTTATTAGAGCTTTTGACTGGTAAAAGGCCAATCGATATGTGCAGACCGAAAGGACTTCGAGACTTGATCTCTTGGGTGTTCCAAATGAGGAAAGACACAAAAGTAAGTGAAGTGTTCGACCCATTAGTATACGACAAGAAGAATGAGACATCGATGGCCGAAGTTCTTGATATAGCATGTCTTTGCTTATGTAAGGAACCTAAAGAGAGGCCTTCTACTCAACAGCTAGTTTCTTGGCTTGATAAAGTAGATATCAATAATATCCATGGACTAGTGATATCAATGATAGATGTTAGGTGGGTAATTTCGATACAGGGTTTTTCAGCTATGGCGCCTAAAGCTGACAGCACCAAAAATGCTGATCCCAGAGCTCAAGCCCTGAAGACTGCCAAGGCAGTCAAGTCTGGGCCAACTTTCAAGAAGAAGGCTAAGAAAATCAGGACGTCGGTCACATTCCATCGCCCGAAAACATTGAAGAAGGATAGGAATCCCAAGTATCCTCGAATCAGTGTGACTCCTAGGAACAAGTTGGATCAATATCAAATTCTTAAATATCCACTAACCACTGAGTCTGCGATGAAGAAAATTGAGGATAATAACACCCTTGTTTTTATTGTCGATATTCGTGCTGACAAGAAAAAGATTAAAGATGCGGTGAAGAAGATGTATGACATTCAGACCAAGAAAGTCAACACTCTAATCAGGCCTGATGGAACAAAGAAGGCATACGTTAGGTTAACCCCAGACTACGACGCTTTGGACGTGGCGAACAAGATTGGAATTATCTAA | 3468 | 41.0 | MCHSTDSTALQDFRRSFSSQIDGLHTNCSTNCCTCTGVTCDSSGRVVKIELGGRKLVGRLPISIARLERLRVLNLSSNSLTGSIPLALFQLPYLEVLDLSFNQFLGSISTGNIDLPSLRILNVSHNSFNGVLPFGVCVNSSRIEILNLGFNDFVGMFPFQLAECVSLKRLHLESNFISGRIPDEVFGLRKLTHLCVQNNKLSGSLSSVVGNLTSLVRLDLSSNEFFGEIPDVFYDSVNLSYFVAESNRFSGNIPNSLSHSASLTVLNLRNNSIGGTLDLNCTAMRSLVTLDLGSNRFHGSIPSNLPSCTKLRSINLARNKLGGQIPESFRHFQSLSYLSLTNTSIVNVSSALNVLQHCQNLRTVVLTFNFHGEVLGDDPNLNFNSLQVFIIANCGLKGMIPQWLRGSNKLQMLDLSWNRLGGNIPSWFGEFQFLFYLDLSNNSFIGGIPKEMTVMQSYIDRNFLLDETASPDFSLFVKRNGTGLQYNQLWRLPPTLNLSLNNLSGQIWPEFGNLKEILVLDLKINSLSGSIPSSLSGMVNLETLDLSHNNLSGIIPPSLQKLNFLSKFSVAYNQLHGTILKGGQFHTFGNSSFEGNNFCVQDDLCASIDRDPLRVSRKSRTVKGSLIGIILGIIFGIIFLATLVVVFMLRTPRGRVGDPENEVSNIDNNDSEEVKAGLVVFFQNNNNGSLSLDDILKSTNDFDQENIIGCGGFGLVYKATLPDGRKVAIKRLSGDCGQMDREFQAEIETLSRAQHPNLVLLQGYCMYKNDRLLIYSYMENGSLDYWLHEKPDGPSCLDWDTRLQIARGAAGGLAYLHQSCEPHILHRDIKSSNILLDENFRAHLADFGLARLILPYDTHVTTDLVGTLGYIPPEYGQSSVATYKGDVYSFGVVLLELLTGKRPIDMCRPKGLRDLISWVFQMRKDTKVSEVFDPLVYDKKNETSMAEVLDIACLCLCKEPKERPSTQQLVSWLDKVDINNIHGLVISMIDVRWVISIQGFSAMAPKADSTKNADPRAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRISVTPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII | 1155 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 1098058 | 1106686 | - | ClCG11G000840.2 | Cla11g00084 | 283906 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla11g00084 | 1155 | Gene3D | Phosphorylase Kinase; domain 1 | 662 | 777 | - | - | |
Cla11g00084 | 1155 | PANTHER | OSJNBB0004A17.8 PROTEIN | 72 | 134 | - | - | |
Cla11g00084 | 1155 | SUPERFAMILY | Protein kinase-like (PK-like) | 686 | 973 | IPR011009 | - | |
Cla11g00084 | 1155 | SUPERFAMILY | RNI-like | 140 | 449 | - | - | |
Cla11g00084 | 1155 | PANTHER | OSJNBB0004A17.8 PROTEIN | 138 | 976 | - | - | |
Cla11g00084 | 1155 | ProSitePatterns | Ribosomal protein L23 signature. | 1133 | 1148 | IPR001014 | - | |
Cla11g00084 | 1155 | ProSiteProfiles | Protein kinase domain profile. | 702 | 985 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cla11g00084 | 1155 | SUPERFAMILY | L domain-like | 484 | 599 | - | - | |
Cla11g00084 | 1155 | PRINTS | Leucine-rich repeat signature | 538 | 551 | - | - | |
Cla11g00084 | 1155 | PRINTS | Leucine-rich repeat signature | 70 | 83 | - | - | |
Cla11g00084 | 1155 | Gene3D | Ribonuclease Inhibitor | 281 | 607 | IPR032675 | - | |
Cla11g00084 | 1155 | PANTHER | RECEPTOR-LIKE PROTEIN 55 | 2 | 61 | - | - | |
Cla11g00084 | 1155 | PANTHER | RECEPTOR-LIKE PROTEIN 55 | 72 | 134 | - | - | |
Cla11g00084 | 1155 | SUPERFAMILY | Ribosomal proteins S24e, L23 and L15e | 1073 | 1148 | IPR012678 | GO:0003735|GO:0005840|GO:0006412 | |
Cla11g00084 | 1155 | Pfam | Ribosomal protein L23 | 1075 | 1136 | IPR013025 | GO:0003735|GO:0005840|GO:0006412 | |
Cla11g00084 | 1155 | Pfam | Ribosomal protein L23, N-terminal domain | 1016 | 1064 | IPR005633 | - | |
Cla11g00084 | 1155 | Pfam | Leucine Rich Repeat | 409 | 429 | IPR001611 | GO:0005515 | |
Cla11g00084 | 1155 | Pfam | Leucine Rich Repeat | 540 | 562 | IPR001611 | GO:0005515 | |
Cla11g00084 | 1155 | SUPERFAMILY | L domain-like | 42 | 133 | - | - | |
Cla11g00084 | 1155 | PANTHER | OSJNBB0004A17.8 PROTEIN | 2 | 61 | - | - | |
Cla11g00084 | 1155 | Hamap | 50S ribosomal protein L23 [rplW]. | 1075 | 1155 | IPR013025 | GO:0003735|GO:0005840|GO:0006412 | |
Cla11g00084 | 1155 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 824 | 836 | IPR008271 | GO:0004672|GO:0006468 | |
Cla11g00084 | 1155 | SMART | serkin_6 | 702 | 973 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cla11g00084 | 1155 | PANTHER | RECEPTOR-LIKE PROTEIN 55 | 138 | 976 | - | - | |
Cla11g00084 | 1155 | ProSiteProfiles | Leucine-rich repeat profile. | 540 | 561 | IPR001611 | GO:0005515 | |
Cla11g00084 | 1155 | Pfam | Protein kinase domain | 703 | 971 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cla11g00084 | 1155 | ProSitePatterns | Protein kinases ATP-binding region signature. | 708 | 730 | IPR017441 | GO:0005524 | |
Cla11g00084 | 1155 | Gene3D | Ribonuclease Inhibitor | 3 | 280 | IPR032675 | - | |
Cla11g00084 | 1155 | Gene3D | Transferase(Phosphotransferase) domain 1 | 778 | 983 | - | - | |
Cla11g00084 | 1155 | SMART | LRR_typ_2 | 67 | 91 | IPR003591 | - | |
Cla11g00084 | 1155 | SMART | LRR_typ_2 | 115 | 139 | IPR003591 | - | |
Cla11g00084 | 1155 | SMART | LRR_typ_2 | 188 | 211 | IPR003591 | - | |
Cla11g00084 | 1155 | SMART | LRR_typ_2 | 212 | 235 | IPR003591 | - | |
Cla11g00084 | 1155 | SMART | LRR_typ_2 | 538 | 561 | IPR003591 | - | |
Cla11g00084 | 1155 | SMART | LRR_typ_2 | 284 | 308 | IPR003591 | - | |
Cla11g00084 | 1155 | Pfam | Leucine rich repeat | 285 | 345 | IPR001611 | GO:0005515 | |
Cla11g00084 | 1155 | Pfam | Leucine rich repeat | 69 | 127 | IPR001611 | GO:0005515 | |
Cla11g00084 | 1155 | Gene3D | - | 1036 | 1155 | IPR012677 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla01g00690 | Cla-Chr1:8128779 | Cla11g00084 | Cla-Chr11:1098058 | 1.46E-165 | dispersed | |
Cla05g01002 | Cla-Chr5:10080430 | Cla11g00084 | Cla-Chr11:1098058 | 0 | dispersed | |
Cla07g00288 | Cla-Chr7:3183627 | Cla11g00084 | Cla-Chr11:1098058 | 3.76E-88 | dispersed | |
Cla09g00322 | Cla-Chr9:3110777 | Cla11g00084 | Cla-Chr11:1098058 | 0 | dispersed | |
Cla09g01968 | Cla-Chr9:37301609 | Cla11g00084 | Cla-Chr11:1098058 | 3.72E-75 | dispersed | |
Cla11g00084 | Cla-Chr11:1098058 | Cla05g00864 | Cla-Chr5:8569756 | 1.63E-42 | dispersed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
80907 | PF00069 | Pkinase | 7.80E-46 | CL0016 | Cla | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla11g00084 | - | - | bhj:120069286 | 1693.32 |