Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla11g00085 ATGTCTCGACCAGTTATTGTTGCATTCACGTTGTTGCTTTTGGGTTTAGCATGCAATGCCCAACTTTCTTCTTCGTTTTACGACCAAACTTGTCCCTCTGCACTCACCACTATTAGAACAGTTATTAGGCAAGCGATCTCTCAAGAACGTCGTATGGCTGCGTCTCTCATTCGCCTCCATTTCCATGATTGTTTTGTTCAGGGATGCGATGCATCGATATTGCTTGATGATACTCCCTCGATGATTGGCGAACAAAATGCAGCACCCAACATAAATTCTGCTAGGGGTTACGGAGTGATACACAAGGCCAAGACTGAAGTTGAGAAGATATGTCCTGGTGTGGTATCTTGTGCAGATGTTCTTGCTATAGCTGCAAGAGATGCTTCTTTTACTGTTGGTGGTCCATCTTGGACAGTAAGACTTGGAAGAAGAGACTCTACCACTGCAAGCAAAGCTCTAGCGGAGAGTGAGCTTCCACATTTCCAAGAAAGTCTTGATAGGCTAATTTCCATTTTTGCAAATAAAGGACTTAGTACAAGAGATATGGTTGCATTGTCAGGTTCTCATACTATAGGACAAGCTCAATGCTTTCTTTTCCGCAATAGGATATACAACCAAAGTAATATTGATGCAGGATTTGCTAGCACACGCCGTAGAAATTGTCCAACATCAGGTGGAAATGGAAATTTGGCACCACTTGATTTGGTCACACCCAATTCTTTTGACAATAATTACTTCAAAAATCTTGTTCAAAGAAAGGGTTTGCTAGAAACAGATCAAGTTCTCTTTAATGGAGGATCAACAGATAATATTGTTACAGAGTACAGTAGAGATCCAACTGCATTCAAATCTGACTTTGCAGCTGCAATGATTAAAATGGGAGACATTCAACCTCTCACTGGTTCAGAAGGACAGATAAGAAACATATGTGGTGTTGTTAACTAA 945 40.85 MSRPVIVAFTLLLLGLACNAQLSSSFYDQTCPSALTTIRTVIRQAISQERRMAASLIRLHFHDCFVQGCDASILLDDTPSMIGEQNAAPNINSARGYGVIHKAKTEVEKICPGVVSCADVLAIAARDASFTVGGPSWTVRLGRRDSTTASKALAESELPHFQESLDRLISIFANKGLSTRDMVALSGSHTIGQAQCFLFRNRIYNQSNIDAGFASTRRRNCPTSGGNGNLAPLDLVTPNSFDNNYFKNLVQRKGLLETDQVLFNGGSTDNIVTEYSRDPTAFKSDFAAAMIKMGDIQPLTGSEGQIRNICGVVN 314
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1110701 1111831 + ClCG11G000860.1 Cla11g00085 283907
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla11g00085 314 CDD secretory_peroxidase 21 313 IPR033905 GO:0004601|GO:0042744
Cla11g00085 314 PANTHER PEROXIDASE 4 312 - -
Cla11g00085 314 PANTHER PEROXIDASE 72-RELATED 4 312 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cla11g00085 314 Pfam Peroxidase 39 278 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cla11g00085 314 SUPERFAMILY Heme-dependent peroxidases 21 314 IPR010255 GO:0004601|GO:0006979|GO:0020037
Cla11g00085 314 Gene3D - 26 310 - -
Cla11g00085 314 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 18 - -
Cla11g00085 314 ProSiteProfiles Plant heme peroxidase family profile. 21 314 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cla11g00085 314 ProSitePatterns Peroxidases active site signature. 53 64 IPR019794 GO:0004601
Cla11g00085 314 PRINTS Haem peroxidase superfamily signature 53 67 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cla11g00085 314 PRINTS Haem peroxidase superfamily signature 115 132 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cla11g00085 314 PRINTS Haem peroxidase superfamily signature 133 145 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cla11g00085 314 PRINTS Haem peroxidase superfamily signature 181 196 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cla11g00085 314 PRINTS Haem peroxidase superfamily signature 234 249 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cla11g00085 314 PRINTS Plant peroxidase signature 31 50 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cla11g00085 314 PRINTS Plant peroxidase signature 55 75 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cla11g00085 314 PRINTS Plant peroxidase signature 95 108 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cla11g00085 314 PRINTS Plant peroxidase signature 114 124 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cla11g00085 314 PRINTS Plant peroxidase signature 133 148 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cla11g00085 314 PRINTS Plant peroxidase signature 180 192 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cla11g00085 314 PRINTS Plant peroxidase signature 232 247 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cla11g00085 314 PRINTS Plant peroxidase signature 248 265 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cla11g00085 314 PRINTS Plant peroxidase signature 288 301 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cla11g00085 314 Gene3D Peroxidase, domain 2 159 293 - -
Cla11g00085 314 ProSitePatterns Peroxidases proximal heme-ligand signature. 181 191 IPR019793 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla11g00060 Cla-Chr11:777489 Cla11g00085 Cla-Chr11:1110701 0 dispersed
Cla11g00085 Cla-Chr11:1110701 Cla11g00557 Cla-Chr11:6305572 1.41E-133 dispersed
Cla11g00085 Cla-Chr11:1110701 Cla11g00086 Cla-Chr11:1117328 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla11g00085 K00430 - csv:116403992 574.318