Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla11g00087 ATGGGTCTCTTCTTCTTCCTCTCTACAATGCCCATTTCAAGGCTTTGCCTATTTCTCGCCTTCTTTCCGCTGTTTCTTTCACCCCTTTCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGATGACCGGAGCTTCCTCCTCCTCCGCCACCACCGCCACCTCCTCCACCAACCCTTTTTCCCATGGACTTCCTTACCTCCATCTCAAGCTCCATCTTCTCTTTCTCCCTTGCCTCAACCACAGCACCAACAGCCTAAACTCCCCTTTTCTTCTACTTCATTTTCCTCGCCCCCTAAACCCTTTTTTCCATCCTACCCTTCGTCGCCGCCGCCGCCTCCGTCCCCTCCTTTGACGGCGCTCCCTACATTTCCGGCCAACATTTCTGCTCTTCTCTTTCCGCAACCTACTTCTTCTTCCCAACACCTCCACCGCCATGTCTTTGCCATTGTCATCTCTGTTTCTCTTGTCTTCTCTGTTCTTGTTTTTCTCGTTGCTCTGTACTTATACTTTCGAAAGCGGAACCGACAAATCTCTGCTACCGATAAGGCCTCGAGAACTGATAATCTCCGGCTGTATCCGCCGGATATTGACACTTCTGATGGAGTTCACAAACACAGAACCTCCTCCACCACCAGCTCCAAATTTCTTTATCTTGGGACTTTGGCTACTTCTCGAGAGATTGATGAGGAGGCCGCCGGAAATGTGGAGGACGGTGGCGGCGGGATCGTGGAGTCTGTTTCTCCGGTGAAAATGGGGTCGCCGGAGCTGAAGCCCCTTCCACCGCTTCCTCGCCGGAATTTCGCCGAAGATTATCAGAGGAATGTTGATAGTAATGACAACGATGATGACGAAGAAGATCGCGACGATGAAGAGTTCTTTTCGCCAAGAGGGTCTTCTGTCGGCGGGAAGGATAATGTGGGGAGTAATAGAAGATTGAGCCCTGTGAAGTTGTTTCATAATGTGGAAACTGAAAATTTCTTGAGGAAAAGCTATAATTCTAGTTTGAATTCTGGTTCTCCCTCTGTTTCTGTTCCCAATAGTCCTTCTCCGCCATTGATGTTGAGCCCCACGAGTTTGAGATCGAAGTCGCCTGACTCCATTATCAGATTCCCTGTTCCTTTACGGCCACTGCCAACACTTCCGGTACCGCCATCACCGTCGTTGTCCTCTGCTTCTTCACCAATGGGAGGTTCAGGGAACACCAAGAACTCGCCGTCGAGAGATTCCGATTTGTCAGAGCTGCATCGGCAGTGTTCAAATGGTTTTAGGATGGATTACCAGCAACCATTACCGGTAAAACTACCACCACCCCGGCCACCACCACCGCCACCACCTCCTCCAATGTTTTGGGAGATTCCTCAATCTTCCTCTCTTCTCAACAAGGAACCAAATCTAGGTCCACCGGTACTCACCGTGCCATCGAGACCGATACTCTCACAGAACATAGCTCATATGTCAGCAGGGGAGCAATCAAACACCATTGGAGATGCCGAGAGAATGGAAGAAAATTCGAAGCCGAAACTGAAGGCCTTGCATTGGGACAAAGTTCGGACGAGCTCCGATCGAGCCATGGTGTGGGATCAGATCAAGTCGAGTTCTTTTCAGTTGAATGAGGAAATGATTGAATCACTTTTTATGGTGAATAACAATAATTCAAGTCTGATGAGCAAGGAAAATGGTAGTGTTCGTCAAAACATGCCTTTAGGGAGCCAAGAGAATCGAGTTCTTGATCCTAAGAAGTCTCAGAATATTGCAATTTTGTTGAGGGCACTTAATGTTACCATTGAAGAAGTCTCAGAGGCCCTTTTGGAAGGAAATTCAGATACTTTGTGCACTGAACTGCTAGAAAGTTTACTAAAAATGGCGCCGACCGAAGAAGAAGAACGTAATTTGAAAGAATACAAAGATGATTCACCTTTTAAACTTGGGCCAGCTGAGAAATTCCTCAAGGTAGTTCTCGATGTACCATTTGCATTCAAAAGGGTGGATGCAATGCTTTACATTGCTAATTTCGAATCTGAGGTTGAGTACCTCAATCGGTCCTTCGAAACTCTTGAGGCTGCTTGTATAGAATTGAAGAACAGCAGAATGTTTCTCAAACTTCTTGAAGCAGTGCTCAAAACCGGGAACCGGATGAATGTAGGCACGAACCGAGGCGATGCACATGCTTTTAAACTCGACACCCTTCTGAAGCTTGTCGATATCAAGGGCACTGATGGAAAGACCACTCTCTTGCATTTCGTAGTGCAGGAGATTATTAGAGCTGAAGGTTATCGACACTCCACCTCTGACCTCAACCTGACAGCTGATAAAACTCAACAATCTTCCTTAACAAATGACGTCGAGTTTCGGAAGCTTGGTCTTCAAGTTGTTTCAGGTCTTAGTAGGGAGCTATCCAATGTGAAGAAAGCTGCATTAATGGATGCAGATGTGCTTAGCAACGATGTAGGGAAACTCGCTGGAGGGATCACAAAAATCACTGAGGTCATTAGATTAAATGAAGACATGTCGAAAGGAGGGAGTAAGTCAAATTTCTCGGACTCCATGAACAGGTTCTTGGGGAGGGCAGCTGAAGAAGTAGCAAGGGTACAAGTCAAAGAGGGCATTATCCTCTCCATGGTAAAGGAAATAACCGAATACTTTCATGGAAACTTAGCGAAAGAAGAAGCTCGGCCGCTGCGTATATTCATGGTGGTATGCAAAGAAGTTGGAAGAATCAATGAAAGAACAATAGTTGGTTCGGCTCGTCAATTTACGGGCCCTCCAAATCCATGTCTTCCATCGATTTTCCCTGGATTATGCGAAAGTCAGCGCTATGCCACCTCCTACCCACCAGCCATTTCACTCCGCCTCGACGCACCTCGCCCGCCGTTCCTGCCCGCCACCGACTTAACGTTGCCGCCGTACACTGCACTCTTAGCTGCTCCAGTCTCAGCCTTCCGACGAAATTGCCGCCGCCACCTTCCTCTCACACTCTCTCACCTCTCCAAGCAATCAGCCTTGCATATCTCTGTTTTGTTTATCAGAAACACTGTGCTTCAGCCCCTAACCGGCGCCGTTGGTGAGATGGTGCCGCTGCCCCTCATTTCTCAGATCCCCAAGTTCAATCAAGTTTCTAGATTTTGTGTGGCCATGAAGAAGCAGGAAGAAACCGTTGTAGCTTCAAGTGATCGCTACGAGATGAGGATTCCGCATGTGTTGAGTGTTGCTGGTTCTGATTCAGGAGCAGGGGCTGGAATCCAAGCGGATCTTAAGACTTGTGCTGCTCGTGGAGTGTACTGCTCCACTGTGATAACTGCTATTACTGCACAGAACACTGTAGGGGTTCAGGATGTGAACATTGTGCCGGAGGGTTTTGTTTCAGAGCAGCTGAAATCTGTTCTCTCTGATATGCAAGTGGATGTGGTGAAAACCGGAATGCTACCTTCTACCCGCATTGTTCAGGTTCTACATCAGCGCCTGAAGGAGTTTCCCGTTCAAGCCTTGGTGGTTGATCCTGTCATGGTGTCTACCAGTGGAGATGTACTAGCTGGTCCTACCATTGTCTCAGTGTTACAGGAAGAGCTTCTACCAATGGCTGACTTGGTAACTCCAAATTTGAAGGAAGCATCTGCCTTACTTGGTGGTATGCCACTTAAAACAATTTCTGACATGCGTCATGCTGCAACATTAATCCATCAGATGGGATCAAAGAATGTACTTGTCAAAGGTGGGGACCTTCCCGATTCATTGGATGCCGTCGATATATTCTTTGATGGCAAGGATTTGCATGAGCTACGTTCTTCGCGCATAAAGACATGCAACACTCATGGTACTGGATGCAGCTTAGCATCATGCATCGCAGCTGAACTTGCTAAAGGGTCTTCAATGTTCTCAGCTGTTAAGGCAAGCAAACAGTTCATTGAAAGAGCATTGAAGTACAGTAAGGACATCAGCATTGGAAATGGACCTCAAGGCCCATTTGATCATCTATGTCGTCTCAAGAGTCAAGAACATAGTTCCTACAGACAGGGGTATTTCAATCCAGCTGACTTATTCTTGTATGCTGTTACGGACTCAGGTATGAATAAGCGTTGGGACCGTTCTATTACCGATGCTGTTAAAGCTGCAGTGGAAGGAGGTGCTACTATTGTTCAAATAAGGGAAAAGGATGCTAAAACTCGTGATTTCTTGGAAGCAGCAAAGGCATGTATGAAGATTTGTCACGCACATGGAGTTCCATTGTTGATCAACGATCGCATTGACATCGCACTTGCGTGTGATGCTGATGGTGTACACGTTGGTCAGTCCGATATTCCTGCTCATGAAGTTCGCAGTCTTCTGGGCCCTAATAAGATCATCGGTGTCTCGTGCAAGACACCGGAGCAAGCAGAACAGGCATGGCTTGATGGTGCAGATTACATTGGGTGCGGTGGAGTTTATCCCACAAACACAAAAGCAAACAATCTGACTGTTGGGATTGATGGATTGAAAAGAGTTTGCTTAGCTTCCAAGTTACCTGTGGTTGCAATTGGTGGTATTAATCAAAGTAATGCAGCAGCTGTGATGGAAATTGGTGTCCCAAATCTTAAAGGTGTTGCAGTTGTGTCAGCTCTTTTTGATAGGCAATGTGTTTTAGAGGAGGCCTTAAAGTTACATGCAACTTTGGTGGAGGCTACAACAACAAATATATGA 4677 47.23 MGLFFFLSTMPISRLCLFLAFFPLFLSPLSAAAAAAAAAAADDRSFLLLRHHRHLLHQPFFPWTSLPPSQAPSSLSPLPQPQHQQPKLPFSSTSFSSPPKPFFPSYPSSPPPPPSPPLTALPTFPANISALLFPQPTSSSQHLHRHVFAIVISVSLVFSVLVFLVALYLYFRKRNRQISATDKASRTDNLRLYPPDIDTSDGVHKHRTSSTTSSKFLYLGTLATSREIDEEAAGNVEDGGGGIVESVSPVKMGSPELKPLPPLPRRNFAEDYQRNVDSNDNDDDEEDRDDEEFFSPRGSSVGGKDNVGSNRRLSPVKLFHNVETENFLRKSYNSSLNSGSPSVSVPNSPSPPLMLSPTSLRSKSPDSIIRFPVPLRPLPTLPVPPSPSLSSASSPMGGSGNTKNSPSRDSDLSELHRQCSNGFRMDYQQPLPVKLPPPRPPPPPPPPPMFWEIPQSSSLLNKEPNLGPPVLTVPSRPILSQNIAHMSAGEQSNTIGDAERMEENSKPKLKALHWDKVRTSSDRAMVWDQIKSSSFQLNEEMIESLFMVNNNNSSLMSKENGSVRQNMPLGSQENRVLDPKKSQNIAILLRALNVTIEEVSEALLEGNSDTLCTELLESLLKMAPTEEEERNLKEYKDDSPFKLGPAEKFLKVVLDVPFAFKRVDAMLYIANFESEVEYLNRSFETLEAACIELKNSRMFLKLLEAVLKTGNRMNVGTNRGDAHAFKLDTLLKLVDIKGTDGKTTLLHFVVQEIIRAEGYRHSTSDLNLTADKTQQSSLTNDVEFRKLGLQVVSGLSRELSNVKKAALMDADVLSNDVGKLAGGITKITEVIRLNEDMSKGGSKSNFSDSMNRFLGRAAEEVARVQVKEGIILSMVKEITEYFHGNLAKEEARPLRIFMVVCKEVGRINERTIVGSARQFTGPPNPCLPSIFPGLCESQRYATSYPPAISLRLDAPRPPFLPATDLTLPPYTALLAAPVSAFRRNCRRHLPLTLSHLSKQSALHISVLFIRNTVLQPLTGAVGEMVPLPLISQIPKFNQVSRFCVAMKKQEETVVASSDRYEMRIPHVLSVAGSDSGAGAGIQADLKTCAARGVYCSTVITAITAQNTVGVQDVNIVPEGFVSEQLKSVLSDMQVDVVKTGMLPSTRIVQVLHQRLKEFPVQALVVDPVMVSTSGDVLAGPTIVSVLQEELLPMADLVTPNLKEASALLGGMPLKTISDMRHAATLIHQMGSKNVLVKGGDLPDSLDAVDIFFDGKDLHELRSSRIKTCNTHGTGCSLASCIAAELAKGSSMFSAVKASKQFIERALKYSKDISIGNGPQGPFDHLCRLKSQEHSSYRQGYFNPADLFLYAVTDSGMNKRWDRSITDAVKAAVEGGATIVQIREKDAKTRDFLEAAKACMKICHAHGVPLLINDRIDIALACDADGVHVGQSDIPAHEVRSLLGPNKIIGVSCKTPEQAEQAWLDGADYIGCGGVYPTNTKANNLTVGIDGLKRVCLASKLPVVAIGGINQSNAAAVMEIGVPNLKGVAVVSALFDRQCVLEEALKLHATLVEATTTNI 1558
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1122841 1136877 - ClCG11G000890.1 Cla11g00087 283909
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla11g00087 1558 Pfam Phosphomethylpyrimidine kinase 1074 1318 IPR013749 -
Cla11g00087 1558 SUPERFAMILY Ribokinase-like 1062 1321 IPR029056 -
Cla11g00087 1558 SMART it6_source 499 912 IPR015425 -
Cla11g00087 1558 TIGRFAM HMP-P_kinase: hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase 1067 1324 IPR004399 GO:0008972|GO:0009228
Cla11g00087 1558 TIGRFAM thiE: thiamine-phosphate diphosphorylase 1348 1537 IPR034291 GO:0004789|GO:0009228
Cla11g00087 1558 Hamap Thiamine-phosphate synthase [thiE]. 1345 1552 IPR034291 GO:0004789|GO:0009228
Cla11g00087 1558 Gene3D Aldolase class I 1341 1553 IPR013785 -
Cla11g00087 1558 CDD TMP_TenI 1348 1548 IPR022998 -
Cla11g00087 1558 Pfam Thiamine monophosphate synthase 1348 1533 IPR022998 -
Cla11g00087 1558 CDD HMPP_kinase 1066 1309 IPR004399 GO:0008972|GO:0009228
Cla11g00087 1558 MobiDBLite consensus disorder prediction 431 451 - -
Cla11g00087 1558 Gene3D - 1045 1340 IPR029056 -
Cla11g00087 1558 MobiDBLite consensus disorder prediction 390 408 - -
Cla11g00087 1558 MobiDBLite consensus disorder prediction 277 291 - -
Cla11g00087 1558 MobiDBLite consensus disorder prediction 100 120 - -
Cla11g00087 1558 PANTHER FORMIN-RELATED 49 941 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Cla11g00087 1558 Gene3D Formin, FH2 domain 498 909 IPR042201 -
Cla11g00087 1558 MobiDBLite consensus disorder prediction 71 120 - -
Cla11g00087 1558 PANTHER FORMIN-LIKE PROTEIN 2 49 941 - -
Cla11g00087 1558 MobiDBLite consensus disorder prediction 427 451 - -
Cla11g00087 1558 ProSiteProfiles Formin homology-2 (FH2) domain profile. 499 930 IPR015425 -
Cla11g00087 1558 Pfam Formin Homology 2 Domain 502 900 IPR015425 -
Cla11g00087 1558 MobiDBLite consensus disorder prediction 231 312 - -
Cla11g00087 1558 Coils Coil 669 689 - -
Cla11g00087 1558 MobiDBLite consensus disorder prediction 333 364 - -
Cla11g00087 1558 MobiDBLite consensus disorder prediction 71 99 - -
Cla11g00087 1558 SUPERFAMILY Formin homology 2 domain (FH2 domain) 436 900 - -
Cla11g00087 1558 SUPERFAMILY Thiamin phosphate synthase 1343 1546 IPR036206 -
Cla11g00087 1558 MobiDBLite consensus disorder prediction 380 413 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g01635 Cla-Chr3:32236458 Cla11g00087 Cla-Chr11:1122841 1.33E-112 dispersed
Cla07g00231 Cla-Chr7:2572105 Cla11g00087 Cla-Chr11:1122841 6.10E-16 dispersed
Cla08g00895 Cla-Chr8:21415552 Cla11g00087 Cla-Chr11:1122841 7.89E-76 dispersed
Cla11g00628 Cla-Chr11:7222350 Cla11g00087 Cla-Chr11:1122841 6.57E-06 dispersed
Cla11g00087 Cla-Chr11:1122841 Cla02g01189 Cla-Chr2:25442545 1.19E-32 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla11g00087 - K14153 csv:101213912 1342.02