Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla11g00087 ATGGGTCTCTTCTTCTTCCTCTCTACAATGCCCATTTCAAGGCTTTGCCTATTTCTCGCCTTCTTTCCGCTGTTTCTTTCACCCCTTTCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGATGACCGGAGCTTCCTCCTCCTCCGCCACCACCGCCACCTCCTCCACCAACCCTTTTTCCCATGGACTTCCTTACCTCCATCTCAAGCTCCATCTTCTCTTTCTCCCTTGCCTCAACCACAGCACCAACAGCCTAAACTCCCCTTTTCTTCTACTTCATTTTCCTCGCCCCCTAAACCCTTTTTTCCATCCTACCCTTCGTCGCCGCCGCCGCCTCCGTCCCCTCCTTTGACGGCGCTCCCTACATTTCCGGCCAACATTTCTGCTCTTCTCTTTCCGCAACCTACTTCTTCTTCCCAACACCTCCACCGCCATGTCTTTGCCATTGTCATCTCTGTTTCTCTTGTCTTCTCTGTTCTTGTTTTTCTCGTTGCTCTGTACTTATACTTTCGAAAGCGGAACCGACAAATCTCTGCTACCGATAAGGCCTCGAGAACTGATAATCTCCGGCTGTATCCGCCGGATATTGACACTTCTGATGGAGTTCACAAACACAGAACCTCCTCCACCACCAGCTCCAAATTTCTTTATCTTGGGACTTTGGCTACTTCTCGAGAGATTGATGAGGAGGCCGCCGGAAATGTGGAGGACGGTGGCGGCGGGATCGTGGAGTCTGTTTCTCCGGTGAAAATGGGGTCGCCGGAGCTGAAGCCCCTTCCACCGCTTCCTCGCCGGAATTTCGCCGAAGATTATCAGAGGAATGTTGATAGTAATGACAACGATGATGACGAAGAAGATCGCGACGATGAAGAGTTCTTTTCGCCAAGAGGGTCTTCTGTCGGCGGGAAGGATAATGTGGGGAGTAATAGAAGATTGAGCCCTGTGAAGTTGTTTCATAATGTGGAAACTGAAAATTTCTTGAGGAAAAGCTATAATTCTAGTTTGAATTCTGGTTCTCCCTCTGTTTCTGTTCCCAATAGTCCTTCTCCGCCATTGATGTTGAGCCCCACGAGTTTGAGATCGAAGTCGCCTGACTCCATTATCAGATTCCCTGTTCCTTTACGGCCACTGCCAACACTTCCGGTACCGCCATCACCGTCGTTGTCCTCTGCTTCTTCACCAATGGGAGGTTCAGGGAACACCAAGAACTCGCCGTCGAGAGATTCCGATTTGTCAGAGCTGCATCGGCAGTGTTCAAATGGTTTTAGGATGGATTACCAGCAACCATTACCGGTAAAACTACCACCACCCCGGCCACCACCACCGCCACCACCTCCTCCAATGTTTTGGGAGATTCCTCAATCTTCCTCTCTTCTCAACAAGGAACCAAATCTAGGTCCACCGGTACTCACCGTGCCATCGAGACCGATACTCTCACAGAACATAGCTCATATGTCAGCAGGGGAGCAATCAAACACCATTGGAGATGCCGAGAGAATGGAAGAAAATTCGAAGCCGAAACTGAAGGCCTTGCATTGGGACAAAGTTCGGACGAGCTCCGATCGAGCCATGGTGTGGGATCAGATCAAGTCGAGTTCTTTTCAGTTGAATGAGGAAATGATTGAATCACTTTTTATGGTGAATAACAATAATTCAAGTCTGATGAGCAAGGAAAATGGTAGTGTTCGTCAAAACATGCCTTTAGGGAGCCAAGAGAATCGAGTTCTTGATCCTAAGAAGTCTCAGAATATTGCAATTTTGTTGAGGGCACTTAATGTTACCATTGAAGAAGTCTCAGAGGCCCTTTTGGAAGGAAATTCAGATACTTTGTGCACTGAACTGCTAGAAAGTTTACTAAAAATGGCGCCGACCGAAGAAGAAGAACGTAATTTGAAAGAATACAAAGATGATTCACCTTTTAAACTTGGGCCAGCTGAGAAATTCCTCAAGGTAGTTCTCGATGTACCATTTGCATTCAAAAGGGTGGATGCAATGCTTTACATTGCTAATTTCGAATCTGAGGTTGAGTACCTCAATCGGTCCTTCGAAACTCTTGAGGCTGCTTGTATAGAATTGAAGAACAGCAGAATGTTTCTCAAACTTCTTGAAGCAGTGCTCAAAACCGGGAACCGGATGAATGTAGGCACGAACCGAGGCGATGCACATGCTTTTAAACTCGACACCCTTCTGAAGCTTGTCGATATCAAGGGCACTGATGGAAAGACCACTCTCTTGCATTTCGTAGTGCAGGAGATTATTAGAGCTGAAGGTTATCGACACTCCACCTCTGACCTCAACCTGACAGCTGATAAAACTCAACAATCTTCCTTAACAAATGACGTCGAGTTTCGGAAGCTTGGTCTTCAAGTTGTTTCAGGTCTTAGTAGGGAGCTATCCAATGTGAAGAAAGCTGCATTAATGGATGCAGATGTGCTTAGCAACGATGTAGGGAAACTCGCTGGAGGGATCACAAAAATCACTGAGGTCATTAGATTAAATGAAGACATGTCGAAAGGAGGGAGTAAGTCAAATTTCTCGGACTCCATGAACAGGTTCTTGGGGAGGGCAGCTGAAGAAGTAGCAAGGGTACAAGTCAAAGAGGGCATTATCCTCTCCATGGTAAAGGAAATAACCGAATACTTTCATGGAAACTTAGCGAAAGAAGAAGCTCGGCCGCTGCGTATATTCATGGTGGTATGCAAAGAAGTTGGAAGAATCAATGAAAGAACAATAGTTGGTTCGGCTCGTCAATTTACGGGCCCTCCAAATCCATGTCTTCCATCGATTTTCCCTGGATTATGCGAAAGTCAGCGCTATGCCACCTCCTACCCACCAGCCATTTCACTCCGCCTCGACGCACCTCGCCCGCCGTTCCTGCCCGCCACCGACTTAACGTTGCCGCCGTACACTGCACTCTTAGCTGCTCCAGTCTCAGCCTTCCGACGAAATTGCCGCCGCCACCTTCCTCTCACACTCTCTCACCTCTCCAAGCAATCAGCCTTGCATATCTCTGTTTTGTTTATCAGAAACACTGTGCTTCAGCCCCTAACCGGCGCCGTTGGTGAGATGGTGCCGCTGCCCCTCATTTCTCAGATCCCCAAGTTCAATCAAGTTTCTAGATTTTGTGTGGCCATGAAGAAGCAGGAAGAAACCGTTGTAGCTTCAAGTGATCGCTACGAGATGAGGATTCCGCATGTGTTGAGTGTTGCTGGTTCTGATTCAGGAGCAGGGGCTGGAATCCAAGCGGATCTTAAGACTTGTGCTGCTCGTGGAGTGTACTGCTCCACTGTGATAACTGCTATTACTGCACAGAACACTGTAGGGGTTCAGGATGTGAACATTGTGCCGGAGGGTTTTGTTTCAGAGCAGCTGAAATCTGTTCTCTCTGATATGCAAGTGGATGTGGTGAAAACCGGAATGCTACCTTCTACCCGCATTGTTCAGGTTCTACATCAGCGCCTGAAGGAGTTTCCCGTTCAAGCCTTGGTGGTTGATCCTGTCATGGTGTCTACCAGTGGAGATGTACTAGCTGGTCCTACCATTGTCTCAGTGTTACAGGAAGAGCTTCTACCAATGGCTGACTTGGTAACTCCAAATTTGAAGGAAGCATCTGCCTTACTTGGTGGTATGCCACTTAAAACAATTTCTGACATGCGTCATGCTGCAACATTAATCCATCAGATGGGATCAAAGAATGTACTTGTCAAAGGTGGGGACCTTCCCGATTCATTGGATGCCGTCGATATATTCTTTGATGGCAAGGATTTGCATGAGCTACGTTCTTCGCGCATAAAGACATGCAACACTCATGGTACTGGATGCAGCTTAGCATCATGCATCGCAGCTGAACTTGCTAAAGGGTCTTCAATGTTCTCAGCTGTTAAGGCAAGCAAACAGTTCATTGAAAGAGCATTGAAGTACAGTAAGGACATCAGCATTGGAAATGGACCTCAAGGCCCATTTGATCATCTATGTCGTCTCAAGAGTCAAGAACATAGTTCCTACAGACAGGGGTATTTCAATCCAGCTGACTTATTCTTGTATGCTGTTACGGACTCAGGTATGAATAAGCGTTGGGACCGTTCTATTACCGATGCTGTTAAAGCTGCAGTGGAAGGAGGTGCTACTATTGTTCAAATAAGGGAAAAGGATGCTAAAACTCGTGATTTCTTGGAAGCAGCAAAGGCATGTATGAAGATTTGTCACGCACATGGAGTTCCATTGTTGATCAACGATCGCATTGACATCGCACTTGCGTGTGATGCTGATGGTGTACACGTTGGTCAGTCCGATATTCCTGCTCATGAAGTTCGCAGTCTTCTGGGCCCTAATAAGATCATCGGTGTCTCGTGCAAGACACCGGAGCAAGCAGAACAGGCATGGCTTGATGGTGCAGATTACATTGGGTGCGGTGGAGTTTATCCCACAAACACAAAAGCAAACAATCTGACTGTTGGGATTGATGGATTGAAAAGAGTTTGCTTAGCTTCCAAGTTACCTGTGGTTGCAATTGGTGGTATTAATCAAAGTAATGCAGCAGCTGTGATGGAAATTGGTGTCCCAAATCTTAAAGGTGTTGCAGTTGTGTCAGCTCTTTTTGATAGGCAATGTGTTTTAGAGGAGGCCTTAAAGTTACATGCAACTTTGGTGGAGGCTACAACAACAAATATATGA 4677 47.23 MGLFFFLSTMPISRLCLFLAFFPLFLSPLSAAAAAAAAAAADDRSFLLLRHHRHLLHQPFFPWTSLPPSQAPSSLSPLPQPQHQQPKLPFSSTSFSSPPKPFFPSYPSSPPPPPSPPLTALPTFPANISALLFPQPTSSSQHLHRHVFAIVISVSLVFSVLVFLVALYLYFRKRNRQISATDKASRTDNLRLYPPDIDTSDGVHKHRTSSTTSSKFLYLGTLATSREIDEEAAGNVEDGGGGIVESVSPVKMGSPELKPLPPLPRRNFAEDYQRNVDSNDNDDDEEDRDDEEFFSPRGSSVGGKDNVGSNRRLSPVKLFHNVETENFLRKSYNSSLNSGSPSVSVPNSPSPPLMLSPTSLRSKSPDSIIRFPVPLRPLPTLPVPPSPSLSSASSPMGGSGNTKNSPSRDSDLSELHRQCSNGFRMDYQQPLPVKLPPPRPPPPPPPPPMFWEIPQSSSLLNKEPNLGPPVLTVPSRPILSQNIAHMSAGEQSNTIGDAERMEENSKPKLKALHWDKVRTSSDRAMVWDQIKSSSFQLNEEMIESLFMVNNNNSSLMSKENGSVRQNMPLGSQENRVLDPKKSQNIAILLRALNVTIEEVSEALLEGNSDTLCTELLESLLKMAPTEEEERNLKEYKDDSPFKLGPAEKFLKVVLDVPFAFKRVDAMLYIANFESEVEYLNRSFETLEAACIELKNSRMFLKLLEAVLKTGNRMNVGTNRGDAHAFKLDTLLKLVDIKGTDGKTTLLHFVVQEIIRAEGYRHSTSDLNLTADKTQQSSLTNDVEFRKLGLQVVSGLSRELSNVKKAALMDADVLSNDVGKLAGGITKITEVIRLNEDMSKGGSKSNFSDSMNRFLGRAAEEVARVQVKEGIILSMVKEITEYFHGNLAKEEARPLRIFMVVCKEVGRINERTIVGSARQFTGPPNPCLPSIFPGLCESQRYATSYPPAISLRLDAPRPPFLPATDLTLPPYTALLAAPVSAFRRNCRRHLPLTLSHLSKQSALHISVLFIRNTVLQPLTGAVGEMVPLPLISQIPKFNQVSRFCVAMKKQEETVVASSDRYEMRIPHVLSVAGSDSGAGAGIQADLKTCAARGVYCSTVITAITAQNTVGVQDVNIVPEGFVSEQLKSVLSDMQVDVVKTGMLPSTRIVQVLHQRLKEFPVQALVVDPVMVSTSGDVLAGPTIVSVLQEELLPMADLVTPNLKEASALLGGMPLKTISDMRHAATLIHQMGSKNVLVKGGDLPDSLDAVDIFFDGKDLHELRSSRIKTCNTHGTGCSLASCIAAELAKGSSMFSAVKASKQFIERALKYSKDISIGNGPQGPFDHLCRLKSQEHSSYRQGYFNPADLFLYAVTDSGMNKRWDRSITDAVKAAVEGGATIVQIREKDAKTRDFLEAAKACMKICHAHGVPLLINDRIDIALACDADGVHVGQSDIPAHEVRSLLGPNKIIGVSCKTPEQAEQAWLDGADYIGCGGVYPTNTKANNLTVGIDGLKRVCLASKLPVVAIGGINQSNAAAVMEIGVPNLKGVAVVSALFDRQCVLEEALKLHATLVEATTTNI 1558
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1122841 1136877 - ClCG11G000890.1 Cla11g00087 283909

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla11g00087 1558 Pfam Phosphomethylpyrimidine kinase 1074 1318 IPR013749 -
Cla11g00087 1558 SUPERFAMILY Ribokinase-like 1062 1321 IPR029056 -
Cla11g00087 1558 SMART it6_source 499 912 IPR015425 -
Cla11g00087 1558 TIGRFAM HMP-P_kinase: hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase 1067 1324 IPR004399 GO:0008972|GO:0009228
Cla11g00087 1558 TIGRFAM thiE: thiamine-phosphate diphosphorylase 1348 1537 IPR034291 GO:0004789|GO:0009228
Cla11g00087 1558 Hamap Thiamine-phosphate synthase [thiE]. 1345 1552 IPR034291 GO:0004789|GO:0009228
Cla11g00087 1558 Gene3D Aldolase class I 1341 1553 IPR013785 -
Cla11g00087 1558 CDD TMP_TenI 1348 1548 IPR022998 -
Cla11g00087 1558 Pfam Thiamine monophosphate synthase 1348 1533 IPR022998 -
Cla11g00087 1558 CDD HMPP_kinase 1066 1309 IPR004399 GO:0008972|GO:0009228
Cla11g00087 1558 MobiDBLite consensus disorder prediction 431 451 - -
Cla11g00087 1558 Gene3D - 1045 1340 IPR029056 -
Cla11g00087 1558 MobiDBLite consensus disorder prediction 390 408 - -
Cla11g00087 1558 MobiDBLite consensus disorder prediction 277 291 - -
Cla11g00087 1558 MobiDBLite consensus disorder prediction 100 120 - -
Cla11g00087 1558 PANTHER FORMIN-RELATED 49 941 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Cla11g00087 1558 Gene3D Formin, FH2 domain 498 909 IPR042201 -
Cla11g00087 1558 MobiDBLite consensus disorder prediction 71 120 - -
Cla11g00087 1558 PANTHER FORMIN-LIKE PROTEIN 2 49 941 - -
Cla11g00087 1558 MobiDBLite consensus disorder prediction 427 451 - -
Cla11g00087 1558 ProSiteProfiles Formin homology-2 (FH2) domain profile. 499 930 IPR015425 -
Cla11g00087 1558 Pfam Formin Homology 2 Domain 502 900 IPR015425 -
Cla11g00087 1558 MobiDBLite consensus disorder prediction 231 312 - -
Cla11g00087 1558 Coils Coil 669 689 - -
Cla11g00087 1558 MobiDBLite consensus disorder prediction 333 364 - -
Cla11g00087 1558 MobiDBLite consensus disorder prediction 71 99 - -
Cla11g00087 1558 SUPERFAMILY Formin homology 2 domain (FH2 domain) 436 900 - -
Cla11g00087 1558 SUPERFAMILY Thiamin phosphate synthase 1343 1546 IPR036206 -
Cla11g00087 1558 MobiDBLite consensus disorder prediction 380 413 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla11g00087 - - K14153 csv:101213912 1342.02
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g01635 Cla-Chr3:32236458 Cla11g00087 Cla-Chr11:1122841 1.33E-112 dispersed
Cla07g00231 Cla-Chr7:2572105 Cla11g00087 Cla-Chr11:1122841 6.10E-16 dispersed
Cla08g00895 Cla-Chr8:21415552 Cla11g00087 Cla-Chr11:1122841 7.89E-76 dispersed
Cla11g00628 Cla-Chr11:7222350 Cla11g00087 Cla-Chr11:1122841 6.57E-06 dispersed
Cla11g00087 Cla-Chr11:1122841 Cla02g01189 Cla-Chr2:25442545 1.19E-32 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla07g00231 . 181 996 FH2 protein (formin) Gene Family AT3G25500 50.1 5.5e-181 632.1
Cla11g00087 . 468 934 FH2 protein (formin) Gene Family AT3G25500 65.8 4.1e-160 562.8
Cla03g01635 . 496 893 FH2 protein (formin) Gene Family AT3G25500 51.7 3.2e-104 377.1
Cla07g00231 . 588 1013 FH2 protein (formin) Gene Family AT2G43800 56.5 5.6e-126 449.1
Cla02g00812 CCT 441 933 FH2 protein (formin) Gene Family AT5G54650 59.2 4.9e-154 542.3
Cla11g00087 . 481 916 FH2 protein (formin) Gene Family AT5G67470 59.3 3.7e-125 446.4
Cla07g00231 . 580 1013 FH2 protein (formin) Gene Family AT5G67470 55.3 1.4e-121 434.5
Cla03g01635 . 496 895 FH2 protein (formin) Gene Family AT5G67470 50.9 9.4e-105 378.6
Cla05g02507 . 349 832 FH2 protein (formin) Gene Family AT1G59910 52.1 7.6e-126 448.7
Cla02g01189 . 730 1033 FH2 protein (formin) Gene Family AT5G48360 52.3 5.7e-74 276.2
Cla07g00225 . 1 1476 FH2 protein (formin) Gene Family AT1G31810 59.8 0.0e+00 1153.7
Cla06g01227 . 1 1245 FH2 protein (formin) Gene Family AT1G31810 51.0 1.5e-241 833.6
Cla06g01570 CCT 1064 1388 FH2 protein (formin) Gene Family AT5G07650 74.2 9.7e-130 461.5
Cla04g01181 CCT 980 1304 FH2 protein (formin) Gene Family AT5G07650 67.4 9.4e-117 418.3
Cla06g01227 . 935 1254 FH2 protein (formin) Gene Family AT5G07650 62.9 1.1e-109 394.8
Cla05g01683 . 1112 1437 FH2 protein (formin) Gene Family AT5G07650 64.4 1.6e-108 391.0
Cla07g00225 . 1131 1473 FH2 protein (formin) Gene Family AT5G07650 57.7 1.3e-105 381.3
Cla06g01570 CCT 909 1381 FH2 protein (formin) Gene Family AT5G07770 56.8 2.1e-129 459.9
Cla04g01181 CCT 903 1304 FH2 protein (formin) Gene Family AT5G07770 61.0 2.4e-125 446.4
Cla05g01683 . 1036 1429 FH2 protein (formin) Gene Family AT5G07770 59.0 5.4e-117 418.7
Cla06g01227 . 858 1246 FH2 protein (formin) Gene Family AT5G07770 57.3 4.5e-116 415.6
Cla07g00225 . 1067 1467 FH2 protein (formin) Gene Family AT5G07770 53.7 1.0e-112 404.4
Cla05g01683 . 1028 1437 FH2 protein (formin) Gene Family AT3G32400 75.6 5.6e-168 587.8
Cla06g01227 . 865 1255 FH2 protein (formin) Gene Family AT3G32400 69.2 2.9e-148 522.3
Cla07g00225 . 1067 1472 FH2 protein (formin) Gene Family AT3G32400 63.7 3.5e-138 488.8
Cla06g01570 CCT 909 1388 FH2 protein (formin) Gene Family AT3G32400 54.2 5.5e-131 464.9
Cla04g01181 CCT 873 1307 FH2 protein (formin) Gene Family AT3G32400 56.4 5.1e-129 458.4
Cla05g01683 . 1 1437 FH2 protein (formin) Gene Family AT2G25050 50.1 0.0e+00 1137.5
Cla06g01227 . 1 1255 FH2 protein (formin) Gene Family AT2G25050 53.6 2.1e-290 995.7
Cla06g01570 CCT 910 1388 FH2 protein (formin) Gene Family AT5G07780 52.0 2.4e-112 402.9
Cla04g01181 CCT 904 1307 FH2 protein (formin) Gene Family AT5G07780 56.2 1.7e-110 396.7
Cla05g01683 . 1037 1430 FH2 protein (formin) Gene Family AT5G07780 53.8 1.5e-101 367.1
Cla06g01227 . 865 1254 FH2 protein (formin) Gene Family AT5G07780 53.8 1.9e-101 366.7
Cla07g00225 . 1068 1468 FH2 protein (formin) Gene Family AT5G07780 50.6 3.0e-99 359.4
Cla06g01570 CCT 1067 1395 FH2 protein (formin) Gene Family AT5G07760 74.3 9.9e-128 454.9
Cla04g01181 CCT 979 1307 FH2 protein (formin) Gene Family AT5G07760 66.7 2.1e-114 410.6
Cla06g01227 . 934 1254 FH2 protein (formin) Gene Family AT5G07760 64.7 5.5e-110 396.0
Cla05g01683 . 1111 1446 FH2 protein (formin) Gene Family AT5G07760 63.4 8.7e-108 388.7
Cla07g00225 . 1141 1473 FH2 protein (formin) Gene Family AT5G07760 58.1 1.4e-102 371.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012393 1 0 1 1 1 1 1 1 1 1 1 1 0 0 1 1 1 1 1 1 3 1 0 1 1 1 1 1 1 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla11g00087 Cla_Chr11 FPKM 10.082644 10.128798 12.728879 7.972849 15.582454 10.255269 17.86356 13.749594 8.880324 12.415617