Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla11g00097 ATGAGTATGAAGATGCAGCAGAGCCACCACTCAGTGGCTGTGAGGTTCAATGAGCAAATTGGAAGCAAAAAAGGGGTCACATTCATTCAAGCCAAGAGGGCTTGGCTTCCTAAGTTCCTATTGCTTTGGGTTCTGTTGGTGGCATTCATCAGTATGCTAATCTACAAGGGAATGGATGCTGACAACAAAGTTAGAAGAAAGGAAGTTTTGGGGAGCATGTGTGACCAGAGGGCAAGGATGCTTCAGGATCAATTCACTGTCAGTGTCAACCATGTCCATGCTTTAGCCATTCTCATTTCCACTTTCCACTACTCCAAAAACATATCAGCAATTGATCAGGAAACTTTTGCTGAGTACACTGCCAGAACAGCTTTCGAGCGGCCTTTGCTTAGTGGCGTGGCATTTGCGCAAAGAGTGGTGCACTTTGAGCGAGAGAAATTTGAGAAGCAACATGGGTGGACTATAAAAACAATGGAAAGGGAACCATCACCTATAAGGGATGAGTATGCGCCAGTCATATTTTCCCAGGAGACTGTTTCCTACATCGAATCTCTTGATATGATGTCTGGAGAGGAGGACCGCGAGAACATTTTGAGGTCAAGAGAAACAGGTAAAGCTGTTTTAACGAGCCCTTTCAGGCTACTGGGTTCTCATCATCTTGGAGTTGTTTTGACGATCCCTGTTTATAAAACCAAGCTTCCTGCAAATCCAACCATGGATGAACGAACTCGAGCAACGGCAGGTTACCTTGGTGGAGCATTTGATGTGGAATCGCTCGTGGAAAATTTACTTGGGCAACTTGCTGGCAATCAGGCCATTTTGGTGAATGTATACGATGTCACAAACTACTCTGATCCCCTAGTAATGTATGGTCATCAATATGAAGATGGTGACATGTCTCTTTTACATGAGAGCAAACTAGATTTTGGAGATCCATTTAGGAAGCATCAGATGATATGCAGATATCATCAGAAAGCACCAACATTATGGACAGCACTTACTACCGCATTCTTATTCTTTGTGATTGGATTGTTAGTGGGATATATCCTATATGGTGCAGCAACTCATATTGTTAAAGTTGAGGATGATTTCAATGAAATGCAAGAACTGAAAGGTCTAGCTGAAGCTGCTGATGTTGCAAAATCTCAGTTTCTCGCCACCGTCTCTCATGAAATCAGGACACCCATGAATGGCATCCTTGGAATGCTTGCTCTACTTCTTGACACTGAACTGAGTTCAACTCAAAGGGATTATGCTCAAACTGCCCAGGCCTGTGGAAAAGCACTGATAGCATTGATAAATGAGGTGCTTGACCGGGCAAAAATTGAAGCTGGGAAGTTGGAGCTTGAAGCGGTTCCTTTTGACCTTAGATTGATACTAGATGATGTTCTGTCTTTGTTTTCTGAAAAGTCAAGGCACAAGGGAGTAGAGTTGGCAGTATTCGTTTCTGACAAAGTTCCTGAAATTGTTATGGGAGATCCTGGAAGGTTCAGACAAGTAATCACAAATCTCGTGGGTAACTCTGTGAAATTCACAGAACAAGGACATATATTTGTCAAAGTTCAATTAGCCGAACAATCAATGACCTCTACGAATATCAAATCTGAAACTCACGTGAATGGAAACTTAGAGGATGGTGCATCCAACAATAAACATCAGTTTGAAACCTTAAGTGGATTTGAGGCAGCTGATAACCAAAACAGTTGGGACACTTTTAAGCACCTAGCAAATGAGGAATTCCAACCGAACGGTTCAAGCAATCTCATGGCTACAAATGAAAGTTCTGATATTGTTACTGTCATGATATCTGTGGAAGATACTGGAATTGGGATTCCGTTATGCGCTCAAGGTCGAGTTTTTATGCCGTTTATGCAAGCAGATAGCTCAACCTCCAGAAACTATGGTGGAACTGGTATTGGCTTAAGCATCAGTAAGTGTTTGGTTGAGCTAATGGGCGGCCAGATTAACTTTGTAAGCCGGCCTCAGGTTGGAAGCACGTTCTCATTCACTGCTGTATTTGGGAGATGTGAGAAGAAAGCGACAGTTGACATCAAAAAGTCTAATTTGGAGGAACTTCCTTCTGCATTTAGAGGATTGAAAGCTGTCGTAGTCGATGGGAAACCAGTTAGAGCTGCTGTTACCAAATACCATTTGAAGAGACTTGGCATCCTGGTTGAAGTTGCCAGCAGTGTCAAGATGGCTGCAGCTTTATGGGGAAAAAATGGATCAGTTAGATCAAGTAATATACTTCAGCCTGACGTAATTCTTCTCGAGAAAGATATCTTTATTTCAAACGAGGAATGTGGTTCTTCTAATTTGCTTCATCAATTAGACTGGAAGCAGAATGGTCATACCTTAAAATTGCCAAAATTGATCCTTCTTGCAACTAGCATGAGCACGGTGGAATTTGATAAAGCGAAGGAAGTGGGTTTCTCTGACACCTTGATCATGAAACCACTGAGAGCAAGCATGATAGGTGCATGTCTTCAACAGGTGCTTGGCTCGGGAAAGAAACGACAGCTTGGGAAGGACATGGCTAATGGCTCTAACTTTCTTAAAGGGCTGCTCTGTGGTAAGAAAATATTGGTCGTTGATGACAATAGGGTAAACCGAAGAGTTGCTGCAGGTGCTTTGAAGAAATTTGGTGCCGATGTAGAGTGTGTCGACAGTGGGAAAGCTGCACTGGCATTGCTTCAATTGCCACACACTTTTGATGCTTGCTTTATGGATATTCAGATGCCAGAAATGGATGGATTCGAAGCGACCCGAAGAATCAGGCTGATGGAGAGCAAGGAAAATGAGGTACTGATTAGGGAATCTGATGGCAAAGAAAATGCAAGGAAAGATGAGTGGCATGTTCCAATATTAGCAATGACCGCAGATGTAATTCACGCAACATACGACGAGTGCCTAAAATGTGGGATGGACGGATACGTATCGAAGCCATTTGAGGAAGAGAATCTTTACCAGGCAGTTGCCAAGTTTTTCAAATCAAAGCCCATCACCGATTCATGA 3015 42.82 MSMKMQQSHHSVAVRFNEQIGSKKGVTFIQAKRAWLPKFLLLWVLLVAFISMLIYKGMDADNKVRRKEVLGSMCDQRARMLQDQFTVSVNHVHALAILISTFHYSKNISAIDQETFAEYTARTAFERPLLSGVAFAQRVVHFEREKFEKQHGWTIKTMEREPSPIRDEYAPVIFSQETVSYIESLDMMSGEEDRENILRSRETGKAVLTSPFRLLGSHHLGVVLTIPVYKTKLPANPTMDERTRATAGYLGGAFDVESLVENLLGQLAGNQAILVNVYDVTNYSDPLVMYGHQYEDGDMSLLHESKLDFGDPFRKHQMICRYHQKAPTLWTALTTAFLFFVIGLLVGYILYGAATHIVKVEDDFNEMQELKGLAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTELSSTQRDYAQTAQACGKALIALINEVLDRAKIEAGKLELEAVPFDLRLILDDVLSLFSEKSRHKGVELAVFVSDKVPEIVMGDPGRFRQVITNLVGNSVKFTEQGHIFVKVQLAEQSMTSTNIKSETHVNGNLEDGASNNKHQFETLSGFEAADNQNSWDTFKHLANEEFQPNGSSNLMATNESSDIVTVMISVEDTGIGIPLCAQGRVFMPFMQADSSTSRNYGGTGIGLSISKCLVELMGGQINFVSRPQVGSTFSFTAVFGRCEKKATVDIKKSNLEELPSAFRGLKAVVVDGKPVRAAVTKYHLKRLGILVEVASSVKMAAALWGKNGSVRSSNILQPDVILLEKDIFISNEECGSSNLLHQLDWKQNGHTLKLPKLILLATSMSTVEFDKAKEVGFSDTLIMKPLRASMIGACLQQVLGSGKKRQLGKDMANGSNFLKGLLCGKKILVVDDNRVNRRVAAGALKKFGADVECVDSGKAALALLQLPHTFDACFMDIQMPEMDGFEATRRIRLMESKENEVLIRESDGKENARKDEWHVPILAMTADVIHATYDECLKCGMDGYVSKPFEEENLYQAVAKFFKSKPITDS 1004
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1275702 1283429 - ClCG11G001010.2 Cla11g00097 283919
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla11g00097 1004 CDD HisKA 380 441 IPR003661 GO:0000155|GO:0007165
Cla11g00097 1004 Pfam CHASE domain 110 290 IPR006189 -
Cla11g00097 1004 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 492 672 IPR003594 -
Cla11g00097 1004 CDD REC_hyHK_CKI1_RcsC-like 861 992 - -
Cla11g00097 1004 CDD HATPase_EvgS-ArcB-TorS-like 497 673 - -
Cla11g00097 1004 ProSiteProfiles Response regulatory domain profile. 860 996 IPR001789 GO:0000160
Cla11g00097 1004 PANTHER TWO-COMPONENT HISTIDINE KINASE 21 1000 - -
Cla11g00097 1004 Gene3D - 694 837 - -
Cla11g00097 1004 Gene3D - 855 1003 - -
Cla11g00097 1004 ProSiteProfiles Histidine kinase domain profile. 387 675 IPR005467 -
Cla11g00097 1004 Gene3D - 353 443 - -
Cla11g00097 1004 SUPERFAMILY CheY-like 858 996 IPR011006 -
Cla11g00097 1004 SMART HisKA_10 380 445 IPR003661 GO:0000155|GO:0007165
Cla11g00097 1004 SUPERFAMILY CheY-like 696 834 IPR011006 -
Cla11g00097 1004 Gene3D CHASE domain 111 326 IPR042240 -
Cla11g00097 1004 Pfam Response regulator receiver domain 861 931 IPR001789 GO:0000160
Cla11g00097 1004 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 369 446 IPR036097 GO:0000155|GO:0007165
Cla11g00097 1004 Coils Coil 430 450 - -
Cla11g00097 1004 Pfam His Kinase A (phospho-acceptor) domain 380 445 IPR003661 GO:0000155|GO:0007165
Cla11g00097 1004 Gene3D - 444 678 IPR036890 -
Cla11g00097 1004 SMART CHASE_2 107 292 IPR006189 -
Cla11g00097 1004 ProSiteProfiles Response regulatory domain profile. 700 833 IPR001789 GO:0000160
Cla11g00097 1004 Gene3D - 58 110 - -
Cla11g00097 1004 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 434 670 IPR036890 -
Cla11g00097 1004 PRINTS Bacterial sensor protein C-terminal signature 600 614 IPR004358 GO:0016310|GO:0016772
Cla11g00097 1004 PRINTS Bacterial sensor protein C-terminal signature 618 628 IPR004358 GO:0016310|GO:0016772
Cla11g00097 1004 PRINTS Bacterial sensor protein C-terminal signature 635 653 IPR004358 GO:0016310|GO:0016772
Cla11g00097 1004 PRINTS Bacterial sensor protein C-terminal signature 659 672 IPR004358 GO:0016310|GO:0016772
Cla11g00097 1004 SMART REC_2 859 992 IPR001789 GO:0000160
Cla11g00097 1004 SMART HKATPase_4 492 675 IPR003594 -
Cla11g00097 1004 ProSiteProfiles CHASE domain profile. 107 319 IPR006189 -
Cla11g00097 1004 PANTHER HISTIDINE KINASE 4 21 1000 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00654 Cla-Chr1:7622763 Cla11g00097 Cla-Chr11:1275702 0 dispersed
Cla05g01652 Cla-Chr5:28058634 Cla11g00097 Cla-Chr11:1275702 1.24E-19 dispersed
Cla06g00204 Cla-Chr6:2419644 Cla11g00097 Cla-Chr11:1275702 0 dispersed
Cla08g00913 Cla-Chr8:21638114 Cla11g00097 Cla-Chr11:1275702 4.65E-08 dispersed
Cla10g00064 Cla-Chr10:684620 Cla11g00097 Cla-Chr11:1275702 2.84E-14 dispersed
Cla11g00097 Cla-Chr11:1275702 Cla11g01088 Cla-Chr11:22045980 1.89E-08 dispersed
Cla11g00097 Cla-Chr11:1275702 Cla02g00275 Cla-Chr2:2706911 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61982 PF02518 HATPase_c 2.10E-31 CL0025 Cla TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla11g00097 K14489 - csv:101204531 1893.63