Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla11g00124 ATGAAAGCTCCTCCAAATGGGTTTCTGGCCAATTCTGGAGAAGCAATCATTGAATTGACTCTCCATGCTGATCTCCTCTATAATGTTGGAAATGAAATTAGCACCTCTGTTTGGAAGTATATGTGGCTTGGGAACTCTAGTCTACAACATCTATTCCGCCGACTCTACCACCTTCACACGAGAAAGATGCCCCCATTGCTGAATTCTAGTCCTGGACGGGTAGAGAAGACTCAGGGAGCTGGTTTGGTCTGGTTGTTTCCCCAAAAATGTAAAAATTTTCATTTGGGAGCTCAGCCACTCTTGCATCAACACCCTTTTTCTACAAGATGCTTTTGGCTGGGAATTTCCCAGATCCAAACAGGTGAAAGGAAGAATATTAATTCTGAGTTATGGCATGCTTGTGCTGGGCCTCTCGTTTCGTTACCTCCAGTTGGAAGTCTTGTGGTTTACTTCCCACAAGGCCACAGTGAACAAGTTGCAGCATCAATGAATAAGGAGACTGATTTCATTCCAAACTACCCTAACCTTCCTTCAAAGTTGATCTGCATGCTCCACAATGTCACATTACATGCTGATCCTGAAACGGATGAAGTGTATGCACAAATGACCCTTCAACCAGTGAATAAATATGAAAAAGAAGCTTTATTGGCATCTGATATTGGCCTCAAGCAAAGCAGGCAGCCTGCAGAATTCTTCTGCAAAACTCTAACAGCTAGTGACACCAGCACTCATGGTGGATTTTCTGTGCCTCGTCGTGCAGCTGAGAAGATTTTCCCCCCATTAGACTACTCGATGCAACCCCCTGCTCAGGAACTAGTGGCTAGAGATTTGCATGATAATTCATGGACATTCAGGCATATTTACCGCGGCCAACCAAAACGTCACCTTCTGACCACTGGTTGGAGTGTTTTTGTTAGCACAAAACGACTCTTTGCTGGAGACTCGGTGCTCTTTATAAGAGATGAAAAGTCACAGCTTCTCTTAGGCATAAGGCGTGCTAACAGGCAGCAGCCAGCTCTCTCTTCATCAGTAATATCAAGTGATAGCATGCACATAGGAATTCTTGCTTCTGCTGCTCATGCTGCTGCGAACAACAGTCCTTTCACTATATTTTACAACCCTAGGGCCAGTCCTTCTGAATTTGTGATACCTTTGGCCAAGTATAATAAAGCAATGTATACGCAAGTTTCACTTGGCATGCGATTTAGGATGATGTTTGAAACTGAGGAGTCGGGAGTACGCAGATATATGGGTACGATTACTGGTATCAGCGACATGGATTCTGTACGATGGAAAAATTCACAGTGGCGCAATCTTCAGGTACTATATAAGTTCTCGAAGGATTTAGATGAATTCTTAAGTGCTGGAAAATCAAAATTCATATTCTCAATTTCATTGGTAAAAGGAAGAGTAAGAGGATGTCTTTACAGGTATTTAACAATAGGGATTGCTCTGTTATTGTCAATTGTTCTAGAGAGACTTGCCCAAGATGTACATGCAGAATTCAGTTTTTTGGCCCATTTTAGGTGCAAATGCTTGTCGGTTGGATGGGATGAATCGGCAGCTGGTGAACGACCTAATCGAGTTTCAATATGGGAAGTTGAGCCTGTTGTGACTCCCTTTTACATATGTCCGCCTCCATTCTTCAGACCCAAATTCCCTAAACAACCAGGGATGCCAGATGATGAATCTGATATTGAAAATGCTTTTAAGAGAGCCATGCCATGGTTTGGTGATGACTTTGGCATGAAAGATACACCAAGCTCAATCTTTCCTGGTTTAAGTTTAGTGCAGTGGATGAGCATGCAACATAATAATCAGTTCCCAGCAGCTCAATCTGGAATTTTGCCGTCCATGGTTCCTAGTGCTCTGCATGGAACTCTTACTAATGAAGACCCATCCAAATTATTGAGTTTTCAAGCACCAGTACTGTCTTCACCAAATCTCCAATTCAGCAAAGCAACTCAACAGAACCAAGCTGGCCAATTGCCTCCAACTGCGTGGTCTCAACAGCAGCAGCTGCAGCAATTATTACAAGTTCCTGCAAGCCAACAGTTACAGCAGCAGCAGTTGCCACCCCAGCAGGAACTACAGCAGCAGCAACAATTGCAGCAGCAACAACTGCAGCAGCTGCCCCAGCAGCAGCAACTCCAGTCGCAACAGCCACAACGGCAACAACAGACCTCGCAATCTGTTCTTCTGAACAACAGTGTAACTGCTGCTAACCATTTGCCAAATCCAAGTTTGCAACAACCACTTGTATACTCTCAGCTACAACAACAGCAATTGCTTGCAGGCAATATTCAATCACATCAAACTAGCCAACCATCTAATAAGAACTCATTTCAGACTACATTATCGGAAGAAACGCAGTTTCAGCCACAAATAGAGCAACAACCTAGCCTTCTTCCGAGACACCAGCAGCCGACACAATTTCAACAGGCCCCACTACAATTATTGCAACAAAGTCTGTCTCAAAGAGCACAACAGCAGCCACAAGTTCAGCAATTTTCACAGCCAATCCCAACTGAGCAACAACTTCAATTGCAGCTGCTACAGAAGCTGCAGCAACAGCAACAGCAGCAGCAGCAGCAGCAACCATTGCTCTCCCCAGCTAGCCCACTATTACCACCTCAGCTGCTACAGCAGCAGCACGTTCATCAGCAAAACCAGCAGATGCCACCATTGCCGTTGCCCAATCAGCAGCAGTTCAGTACTAGTGGTGGCAGCTTCCAAACAGAAAAGCTTAACAGCAATGGCTTCGCAAGTTTAGGTCTCATGCAGTCCCAGCAGGTTCCTATAACCCAATCCCATAACCAATTCAAACCAACCACCGCAATTAGAGCATACTCTGGACTGACTGATGGAGATGCTCCGTCTTGTTCAACCTCACCTTCCACTAATAACTGCGCAGTTTCAGTATCAAACCTGCTCAATAAGAACCAACAAGGAGCAGCCACACTTGGTGGAGATTCAGTAGTTGAGCCTGCAACTAACCCGACACAGGAGCTACAGAGCAAACCTGATTTGCGGATCAAACATGAGTTTCCTAACTCAAAAGGACTGGACCAACTAAAGTATAAAGGCACTGTTCCTGATCAGTTAGAAGCATCTTCTTCTGGGACGTCATATTGTTTGGATGCTGGCACCATTCAGCAGACTCTCCCACTCCCTACATGTTTGGATAATGATGTACAATCACATCCACGTAACAATATCCCTTTCAGTAATAGCATTGATGGATTGACACCAGATACCTTATTGTCGAGGGGATATGACTCTCAAAAAGATCTTCAGAACTTACTTTCTAACTATGGTGGGGGTGTGCCAAGAGATATTGAAACAGAGTTGTCCACTGCTGCAATCAGCTCTCAGTCCTTTGGGGTTCCAAACCTGCCTTTCAAGCCTGGCTGCTCAAATGATGTCAATGTAAATGAAGCTGGAGCTTTGAGTAGTGGATTGTGGGCAAACCACAGTCAACGTATGCGTACATATACAAAGGTTTGTTGCCCCACTATATGTCTACTTTCTCTAGTATCCCAGGTGAATAAGGTCAGTTCAAGTGTAACTCCAATTCTCATTAAGAAATTCACATCATCTAAATCTGCTAAAATTTTGAAGGTTCAAAAGCGTGGATCAGTGGGTAGATGTATCGACGTCACTCGCTACAAAGGATATGAGGAGCTTAGGCATGATCTTGCCCGCATGTTTGGCATTGAAGGGCAGTTAGAAGATCCTCAACGAACTGATTGGAAACTTGTTTATGTGGACCATGAAAATGATATACTTCTAGTTGGTGATGATCCTTGGGAGGAGTTCGTGAGCTGTGTTCAGAGCATAAAGATCCTGTCATCCGCTGAAGTACAGCAGATGAGTTTGGATGGGAATTTGGGTCACATTCAGGCTCCCAATCAAGCTTGCAGTGGGACAGATAGTGGAAATGCATGGAGAGGGCAGTATGACGACAACTCGGCTGCATCATTCAATCGATAA 3993 44.4 MKAPPNGFLANSGEAIIELTLHADLLYNVGNEISTSVWKYMWLGNSSLQHLFRRLYHLHTRKMPPLLNSSPGRVEKTQGAGLVWLFPQKCKNFHLGAQPLLHQHPFSTRCFWLGISQIQTGERKNINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMNKETDFIPNYPNLPSKLICMLHNVTLHADPETDEVYAQMTLQPVNKYEKEALLASDIGLKQSRQPAEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDYSMQPPAQELVARDLHDNSWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFIRDEKSQLLLGIRRANRQQPALSSSVISSDSMHIGILASAAHAAANNSPFTIFYNPRASPSEFVIPLAKYNKAMYTQVSLGMRFRMMFETEESGVRRYMGTITGISDMDSVRWKNSQWRNLQVLYKFSKDLDEFLSAGKSKFIFSISLVKGRVRGCLYRYLTIGIALLLSIVLERLAQDVHAEFSFLAHFRCKCLSVGWDESAAGERPNRVSIWEVEPVVTPFYICPPPFFRPKFPKQPGMPDDESDIENAFKRAMPWFGDDFGMKDTPSSIFPGLSLVQWMSMQHNNQFPAAQSGILPSMVPSALHGTLTNEDPSKLLSFQAPVLSSPNLQFSKATQQNQAGQLPPTAWSQQQQLQQLLQVPASQQLQQQQLPPQQELQQQQQLQQQQLQQLPQQQQLQSQQPQRQQQTSQSVLLNNSVTAANHLPNPSLQQPLVYSQLQQQQLLAGNIQSHQTSQPSNKNSFQTTLSEETQFQPQIEQQPSLLPRHQQPTQFQQAPLQLLQQSLSQRAQQQPQVQQFSQPIPTEQQLQLQLLQKLQQQQQQQQQQQPLLSPASPLLPPQLLQQQHVHQQNQQMPPLPLPNQQQFSTSGGSFQTEKLNSNGFASLGLMQSQQVPITQSHNQFKPTTAIRAYSGLTDGDAPSCSTSPSTNNCAVSVSNLLNKNQQGAATLGGDSVVEPATNPTQELQSKPDLRIKHEFPNSKGLDQLKYKGTVPDQLEASSSGTSYCLDAGTIQQTLPLPTCLDNDVQSHPRNNIPFSNSIDGLTPDTLLSRGYDSQKDLQNLLSNYGGGVPRDIETELSTAAISSQSFGVPNLPFKPGCSNDVNVNEAGALSSGLWANHSQRMRTYTKVCCPTICLLSLVSQVNKVSSSVTPILIKKFTSSKSAKILKVQKRGSVGRCIDVTRYKGYEELRHDLARMFGIEGQLEDPQRTDWKLVYVDHENDILLVGDDPWEEFVSCVQSIKILSSAEVQQMSLDGNLGHIQAPNQACSGTDSGNAWRGQYDDNSAASFNR 1330
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1594840 1607361 + ClCG11G001330.2 Cla11g00124 283946
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla11g00124 1330 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1207 1318 IPR044835 GO:0003677|GO:0006355|GO:0009725
Cla11g00124 1330 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 119 441 IPR044835 GO:0003677|GO:0006355|GO:0009725
Cla11g00124 1330 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 511 1168 IPR044835 GO:0003677|GO:0006355|GO:0009725
Cla11g00124 1330 Gene3D - 507 540 - -
Cla11g00124 1330 Gene3D - 230 333 IPR015300 -
Cla11g00124 1330 Gene3D - 1199 1292 - -
Cla11g00124 1330 SMART B3_2 232 334 IPR003340 GO:0003677
Cla11g00124 1330 Pfam AUX/IAA family 1199 1289 IPR033389 -
Cla11g00124 1330 Pfam Auxin response factor 358 440 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Cla11g00124 1330 SUPERFAMILY DNA-binding pseudobarrel domain 222 361 IPR015300 -
Cla11g00124 1330 ProSiteProfiles B3 DNA-binding domain profile. 232 334 IPR003340 GO:0003677
Cla11g00124 1330 CDD B3_DNA 231 332 IPR003340 GO:0003677
Cla11g00124 1330 MobiDBLite consensus disorder prediction 768 812 - -
Cla11g00124 1330 SUPERFAMILY CAD & PB1 domains 1204 1281 - -
Cla11g00124 1330 PANTHER AUXIN RESPONSE FACTOR 19 119 441 - -
Cla11g00124 1330 PANTHER AUXIN RESPONSE FACTOR 19 1207 1318 - -
Cla11g00124 1330 PANTHER AUXIN RESPONSE FACTOR 19 511 1168 - -
Cla11g00124 1330 Pfam B3 DNA binding domain 232 333 IPR003340 GO:0003677
Cla11g00124 1330 MobiDBLite consensus disorder prediction 1311 1330 - -
Cla11g00124 1330 Gene3D - 395 451 - -
Cla11g00124 1330 ProSiteProfiles PB1 domain profile. 1203 1296 IPR000270 GO:0005515
Cla11g00124 1330 MobiDBLite consensus disorder prediction 882 916 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g02432 Cla-Chr1:37937835 Cla11g00124 Cla-Chr11:1594840 4.35E-07 dispersed
Cla11g00124 Cla-Chr11:1594840 Cla11g01119 Cla-Chr11:22729888 3.09E-101 dispersed
Cla11g00124 Cla-Chr11:1594840 Cla03g00607 Cla-Chr3:7181134 1.12E-08 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61986 PF02309 AUX_IAA 3.60E-09 CL0072 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla11g00124 K14486 - csv:101210917 626.706