Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla11g00124 | ATGAAAGCTCCTCCAAATGGGTTTCTGGCCAATTCTGGAGAAGCAATCATTGAATTGACTCTCCATGCTGATCTCCTCTATAATGTTGGAAATGAAATTAGCACCTCTGTTTGGAAGTATATGTGGCTTGGGAACTCTAGTCTACAACATCTATTCCGCCGACTCTACCACCTTCACACGAGAAAGATGCCCCCATTGCTGAATTCTAGTCCTGGACGGGTAGAGAAGACTCAGGGAGCTGGTTTGGTCTGGTTGTTTCCCCAAAAATGTAAAAATTTTCATTTGGGAGCTCAGCCACTCTTGCATCAACACCCTTTTTCTACAAGATGCTTTTGGCTGGGAATTTCCCAGATCCAAACAGGTGAAAGGAAGAATATTAATTCTGAGTTATGGCATGCTTGTGCTGGGCCTCTCGTTTCGTTACCTCCAGTTGGAAGTCTTGTGGTTTACTTCCCACAAGGCCACAGTGAACAAGTTGCAGCATCAATGAATAAGGAGACTGATTTCATTCCAAACTACCCTAACCTTCCTTCAAAGTTGATCTGCATGCTCCACAATGTCACATTACATGCTGATCCTGAAACGGATGAAGTGTATGCACAAATGACCCTTCAACCAGTGAATAAATATGAAAAAGAAGCTTTATTGGCATCTGATATTGGCCTCAAGCAAAGCAGGCAGCCTGCAGAATTCTTCTGCAAAACTCTAACAGCTAGTGACACCAGCACTCATGGTGGATTTTCTGTGCCTCGTCGTGCAGCTGAGAAGATTTTCCCCCCATTAGACTACTCGATGCAACCCCCTGCTCAGGAACTAGTGGCTAGAGATTTGCATGATAATTCATGGACATTCAGGCATATTTACCGCGGCCAACCAAAACGTCACCTTCTGACCACTGGTTGGAGTGTTTTTGTTAGCACAAAACGACTCTTTGCTGGAGACTCGGTGCTCTTTATAAGAGATGAAAAGTCACAGCTTCTCTTAGGCATAAGGCGTGCTAACAGGCAGCAGCCAGCTCTCTCTTCATCAGTAATATCAAGTGATAGCATGCACATAGGAATTCTTGCTTCTGCTGCTCATGCTGCTGCGAACAACAGTCCTTTCACTATATTTTACAACCCTAGGGCCAGTCCTTCTGAATTTGTGATACCTTTGGCCAAGTATAATAAAGCAATGTATACGCAAGTTTCACTTGGCATGCGATTTAGGATGATGTTTGAAACTGAGGAGTCGGGAGTACGCAGATATATGGGTACGATTACTGGTATCAGCGACATGGATTCTGTACGATGGAAAAATTCACAGTGGCGCAATCTTCAGGTACTATATAAGTTCTCGAAGGATTTAGATGAATTCTTAAGTGCTGGAAAATCAAAATTCATATTCTCAATTTCATTGGTAAAAGGAAGAGTAAGAGGATGTCTTTACAGGTATTTAACAATAGGGATTGCTCTGTTATTGTCAATTGTTCTAGAGAGACTTGCCCAAGATGTACATGCAGAATTCAGTTTTTTGGCCCATTTTAGGTGCAAATGCTTGTCGGTTGGATGGGATGAATCGGCAGCTGGTGAACGACCTAATCGAGTTTCAATATGGGAAGTTGAGCCTGTTGTGACTCCCTTTTACATATGTCCGCCTCCATTCTTCAGACCCAAATTCCCTAAACAACCAGGGATGCCAGATGATGAATCTGATATTGAAAATGCTTTTAAGAGAGCCATGCCATGGTTTGGTGATGACTTTGGCATGAAAGATACACCAAGCTCAATCTTTCCTGGTTTAAGTTTAGTGCAGTGGATGAGCATGCAACATAATAATCAGTTCCCAGCAGCTCAATCTGGAATTTTGCCGTCCATGGTTCCTAGTGCTCTGCATGGAACTCTTACTAATGAAGACCCATCCAAATTATTGAGTTTTCAAGCACCAGTACTGTCTTCACCAAATCTCCAATTCAGCAAAGCAACTCAACAGAACCAAGCTGGCCAATTGCCTCCAACTGCGTGGTCTCAACAGCAGCAGCTGCAGCAATTATTACAAGTTCCTGCAAGCCAACAGTTACAGCAGCAGCAGTTGCCACCCCAGCAGGAACTACAGCAGCAGCAACAATTGCAGCAGCAACAACTGCAGCAGCTGCCCCAGCAGCAGCAACTCCAGTCGCAACAGCCACAACGGCAACAACAGACCTCGCAATCTGTTCTTCTGAACAACAGTGTAACTGCTGCTAACCATTTGCCAAATCCAAGTTTGCAACAACCACTTGTATACTCTCAGCTACAACAACAGCAATTGCTTGCAGGCAATATTCAATCACATCAAACTAGCCAACCATCTAATAAGAACTCATTTCAGACTACATTATCGGAAGAAACGCAGTTTCAGCCACAAATAGAGCAACAACCTAGCCTTCTTCCGAGACACCAGCAGCCGACACAATTTCAACAGGCCCCACTACAATTATTGCAACAAAGTCTGTCTCAAAGAGCACAACAGCAGCCACAAGTTCAGCAATTTTCACAGCCAATCCCAACTGAGCAACAACTTCAATTGCAGCTGCTACAGAAGCTGCAGCAACAGCAACAGCAGCAGCAGCAGCAGCAACCATTGCTCTCCCCAGCTAGCCCACTATTACCACCTCAGCTGCTACAGCAGCAGCACGTTCATCAGCAAAACCAGCAGATGCCACCATTGCCGTTGCCCAATCAGCAGCAGTTCAGTACTAGTGGTGGCAGCTTCCAAACAGAAAAGCTTAACAGCAATGGCTTCGCAAGTTTAGGTCTCATGCAGTCCCAGCAGGTTCCTATAACCCAATCCCATAACCAATTCAAACCAACCACCGCAATTAGAGCATACTCTGGACTGACTGATGGAGATGCTCCGTCTTGTTCAACCTCACCTTCCACTAATAACTGCGCAGTTTCAGTATCAAACCTGCTCAATAAGAACCAACAAGGAGCAGCCACACTTGGTGGAGATTCAGTAGTTGAGCCTGCAACTAACCCGACACAGGAGCTACAGAGCAAACCTGATTTGCGGATCAAACATGAGTTTCCTAACTCAAAAGGACTGGACCAACTAAAGTATAAAGGCACTGTTCCTGATCAGTTAGAAGCATCTTCTTCTGGGACGTCATATTGTTTGGATGCTGGCACCATTCAGCAGACTCTCCCACTCCCTACATGTTTGGATAATGATGTACAATCACATCCACGTAACAATATCCCTTTCAGTAATAGCATTGATGGATTGACACCAGATACCTTATTGTCGAGGGGATATGACTCTCAAAAAGATCTTCAGAACTTACTTTCTAACTATGGTGGGGGTGTGCCAAGAGATATTGAAACAGAGTTGTCCACTGCTGCAATCAGCTCTCAGTCCTTTGGGGTTCCAAACCTGCCTTTCAAGCCTGGCTGCTCAAATGATGTCAATGTAAATGAAGCTGGAGCTTTGAGTAGTGGATTGTGGGCAAACCACAGTCAACGTATGCGTACATATACAAAGGTTTGTTGCCCCACTATATGTCTACTTTCTCTAGTATCCCAGGTGAATAAGGTCAGTTCAAGTGTAACTCCAATTCTCATTAAGAAATTCACATCATCTAAATCTGCTAAAATTTTGAAGGTTCAAAAGCGTGGATCAGTGGGTAGATGTATCGACGTCACTCGCTACAAAGGATATGAGGAGCTTAGGCATGATCTTGCCCGCATGTTTGGCATTGAAGGGCAGTTAGAAGATCCTCAACGAACTGATTGGAAACTTGTTTATGTGGACCATGAAAATGATATACTTCTAGTTGGTGATGATCCTTGGGAGGAGTTCGTGAGCTGTGTTCAGAGCATAAAGATCCTGTCATCCGCTGAAGTACAGCAGATGAGTTTGGATGGGAATTTGGGTCACATTCAGGCTCCCAATCAAGCTTGCAGTGGGACAGATAGTGGAAATGCATGGAGAGGGCAGTATGACGACAACTCGGCTGCATCATTCAATCGATAA | 3993 | 44.4 | MKAPPNGFLANSGEAIIELTLHADLLYNVGNEISTSVWKYMWLGNSSLQHLFRRLYHLHTRKMPPLLNSSPGRVEKTQGAGLVWLFPQKCKNFHLGAQPLLHQHPFSTRCFWLGISQIQTGERKNINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMNKETDFIPNYPNLPSKLICMLHNVTLHADPETDEVYAQMTLQPVNKYEKEALLASDIGLKQSRQPAEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDYSMQPPAQELVARDLHDNSWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFIRDEKSQLLLGIRRANRQQPALSSSVISSDSMHIGILASAAHAAANNSPFTIFYNPRASPSEFVIPLAKYNKAMYTQVSLGMRFRMMFETEESGVRRYMGTITGISDMDSVRWKNSQWRNLQVLYKFSKDLDEFLSAGKSKFIFSISLVKGRVRGCLYRYLTIGIALLLSIVLERLAQDVHAEFSFLAHFRCKCLSVGWDESAAGERPNRVSIWEVEPVVTPFYICPPPFFRPKFPKQPGMPDDESDIENAFKRAMPWFGDDFGMKDTPSSIFPGLSLVQWMSMQHNNQFPAAQSGILPSMVPSALHGTLTNEDPSKLLSFQAPVLSSPNLQFSKATQQNQAGQLPPTAWSQQQQLQQLLQVPASQQLQQQQLPPQQELQQQQQLQQQQLQQLPQQQQLQSQQPQRQQQTSQSVLLNNSVTAANHLPNPSLQQPLVYSQLQQQQLLAGNIQSHQTSQPSNKNSFQTTLSEETQFQPQIEQQPSLLPRHQQPTQFQQAPLQLLQQSLSQRAQQQPQVQQFSQPIPTEQQLQLQLLQKLQQQQQQQQQQQPLLSPASPLLPPQLLQQQHVHQQNQQMPPLPLPNQQQFSTSGGSFQTEKLNSNGFASLGLMQSQQVPITQSHNQFKPTTAIRAYSGLTDGDAPSCSTSPSTNNCAVSVSNLLNKNQQGAATLGGDSVVEPATNPTQELQSKPDLRIKHEFPNSKGLDQLKYKGTVPDQLEASSSGTSYCLDAGTIQQTLPLPTCLDNDVQSHPRNNIPFSNSIDGLTPDTLLSRGYDSQKDLQNLLSNYGGGVPRDIETELSTAAISSQSFGVPNLPFKPGCSNDVNVNEAGALSSGLWANHSQRMRTYTKVCCPTICLLSLVSQVNKVSSSVTPILIKKFTSSKSAKILKVQKRGSVGRCIDVTRYKGYEELRHDLARMFGIEGQLEDPQRTDWKLVYVDHENDILLVGDDPWEEFVSCVQSIKILSSAEVQQMSLDGNLGHIQAPNQACSGTDSGNAWRGQYDDNSAASFNR | 1330 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 1594840 | 1607361 | + | ClCG11G001330.2 | Cla11g00124 | 283946 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla11g00124 | 1330 | PANTHER | AUXIN RESPONSE FACTOR 4-RELATED | 1207 | 1318 | IPR044835 | GO:0003677|GO:0006355|GO:0009725 | |
Cla11g00124 | 1330 | PANTHER | AUXIN RESPONSE FACTOR 4-RELATED | 119 | 441 | IPR044835 | GO:0003677|GO:0006355|GO:0009725 | |
Cla11g00124 | 1330 | PANTHER | AUXIN RESPONSE FACTOR 4-RELATED | 511 | 1168 | IPR044835 | GO:0003677|GO:0006355|GO:0009725 | |
Cla11g00124 | 1330 | Gene3D | - | 507 | 540 | - | - | |
Cla11g00124 | 1330 | Gene3D | - | 230 | 333 | IPR015300 | - | |
Cla11g00124 | 1330 | Gene3D | - | 1199 | 1292 | - | - | |
Cla11g00124 | 1330 | SMART | B3_2 | 232 | 334 | IPR003340 | GO:0003677 | |
Cla11g00124 | 1330 | Pfam | AUX/IAA family | 1199 | 1289 | IPR033389 | - | |
Cla11g00124 | 1330 | Pfam | Auxin response factor | 358 | 440 | IPR010525 | GO:0003677|GO:0005634|GO:0006355|GO:0009725 | |
Cla11g00124 | 1330 | SUPERFAMILY | DNA-binding pseudobarrel domain | 222 | 361 | IPR015300 | - | |
Cla11g00124 | 1330 | ProSiteProfiles | B3 DNA-binding domain profile. | 232 | 334 | IPR003340 | GO:0003677 | |
Cla11g00124 | 1330 | CDD | B3_DNA | 231 | 332 | IPR003340 | GO:0003677 | |
Cla11g00124 | 1330 | MobiDBLite | consensus disorder prediction | 768 | 812 | - | - | |
Cla11g00124 | 1330 | SUPERFAMILY | CAD & PB1 domains | 1204 | 1281 | - | - | |
Cla11g00124 | 1330 | PANTHER | AUXIN RESPONSE FACTOR 19 | 119 | 441 | - | - | |
Cla11g00124 | 1330 | PANTHER | AUXIN RESPONSE FACTOR 19 | 1207 | 1318 | - | - | |
Cla11g00124 | 1330 | PANTHER | AUXIN RESPONSE FACTOR 19 | 511 | 1168 | - | - | |
Cla11g00124 | 1330 | Pfam | B3 DNA binding domain | 232 | 333 | IPR003340 | GO:0003677 | |
Cla11g00124 | 1330 | MobiDBLite | consensus disorder prediction | 1311 | 1330 | - | - | |
Cla11g00124 | 1330 | Gene3D | - | 395 | 451 | - | - | |
Cla11g00124 | 1330 | ProSiteProfiles | PB1 domain profile. | 1203 | 1296 | IPR000270 | GO:0005515 | |
Cla11g00124 | 1330 | MobiDBLite | consensus disorder prediction | 882 | 916 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla01g02432 | Cla-Chr1:37937835 | Cla11g00124 | Cla-Chr11:1594840 | 4.35E-07 | dispersed | |
Cla11g00124 | Cla-Chr11:1594840 | Cla11g01119 | Cla-Chr11:22729888 | 3.09E-101 | dispersed | |
Cla11g00124 | Cla-Chr11:1594840 | Cla03g00607 | Cla-Chr3:7181134 | 1.12E-08 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
61986 | PF02309 | AUX_IAA | 3.60E-09 | CL0072 | Cla | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla11g00124 | K14486 | - | csv:101210917 | 626.706 |