Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla11g00126 ATGGGCGCTTTTGGAATTGTGTTCTTCTTCCTCCTCCTTGTCGCTGTGTTTCCTTTGTCTTCTCCTTTGTCCGAGAACGAAGCTCTTTTGAAACTCAAACAATCCTTCACCCATTCCGAATCCTTGAATTCTTGGAACTCTGACTCTGTCCCTTGCTCCGCTCGATGGACCGGCATTATCTGTAATAGAGGCGTTATCACCGGCCTACATCTCTCCGGCCTCCAACTCTCCGGAAAAATCGACGTCGAAGCTCTTCTTCAGCTTCGTAGCCTTCGAACCATTAGCTTCGTTAACAACAAATTCTCCGGTCCGATTCCGGAATTCAACAAAATCGGAGTTCTAAAATCTCTTCTCTTAACCGGAAACCACTTCTCCGGCGCTATCCCAAACGATTTCTTCTCTTCCTTAACTTCTTTAAAAAAGGTTTGGCTCTCTTCAAACAATTTCTCCGGTAACATTCCAAATTCTCTAGCTCAACTCTCCCATTTAATCGAACTCCATCTCGAGAGCAACCAATTTTCAGGACCAATCCCAAATCTCAAATACGCTTCAATTATAACATCCCTTGATCTCTCCAACAACAAACTCGAAGGTCAAATTCCCGAAACCCTTTCAAAATTCGACGCAAAAGCATTCGCTGGAAATGAAGGCCTTTGCGGAAACCCACTCCCGAAATCTTGCGGCGAAAACGCTGGACGAATTTCTGAAGAGAAACCCCTTTCTTCATCTTCACCTCCTGGGGAATCGCAAAGCAATGTTTCGAAATTGGTTGTGGCTTCATTGATAGCCGTGGTTGTATTTCTAATGGTGTTTATATTTTTGAGTGCTTCAAAGCGCAGAGAAGATGAGTTCAGTGTATTGGGGAGAGAACAAATGGAGGAAGTTGTGGAGGTTCATGTACCGAGTTCCGGCGGCGGCCATGATAAGCAATCCAGCAGAAGAGGTGGGGATTCTAAGAGAGGATCGCAACAGGGGAAGGCGGGGATGAGCGATCTTGTGGTGGTTAATGAAGATAAAGGGACGTTTGGTTTGGCGGATTTGATGAAGGCTGCGGCGGAGGTTTTAGGGAATGGTGGGTTGGGTTCGGCTTACAAGGCGGTTATGTCCAATGGGTTGTCGGTGGTGGTGAAGAGAATGAGAGAGATGAATAAATTAGGGAAAGATGGGTTCGATGCGGAGATGAGACGACTTGGAAGATTGCGCCATCAGAATATATTAACGCCTTTGGCTTATCATTACAGGAGAGAGGAGAAATTGCTTGTGTCCGAGTACATTCCAAAGGGTAGCCTCTTGTATGTGTTGCATGGTGATCGTGGAGCCTGCCATGCAGATCTCAATTGGGCCACTCGGTTAAGGATCGTGCAGGGGATTGCAAGGGGATTGGGATTCCTCCATTCAGAATTTGCAACGTATGATCTGCCGCATGGGAATCTGAAATCCAGCAACGTTCTTCTAAGCGACAACTATGAGCCACTTTTGAGCGACTACGCATTCCATCCCCTTATCAATCCCAACAATGCAACTCAGGCAATGTTCGCTTACAAATCCCCTGAGTACGGGCAATACCAGGAAGTCTCTCCCAAGTCTGATGTTTATTGTCTTGGCATTATCATTCTCGAAATCATGACTAGTAAATTTCCTTCTCATTATCTTACAAATGGCAAGGGTGGTACTGATGTGGTGCAGTGGGTCTCATCTGCAATTTCTGAGAAGAGGGAGGCTGAACTCATTGACCCTGAGATTGCAAACGACACCGGTGCACTCAATCACATGGTCCAGCTTCTCATAATCGGCGCGGATTGCACCCACAATAATCCTCAGCAACGGCCAGAAATGAGGGAAGCCATTAGGAGAATAGAAGAGATATGA 1869 46.23 MGAFGIVFFFLLLVAVFPLSSPLSENEALLKLKQSFTHSESLNSWNSDSVPCSARWTGIICNRGVITGLHLSGLQLSGKIDVEALLQLRSLRTISFVNNKFSGPIPEFNKIGVLKSLLLTGNHFSGAIPNDFFSSLTSLKKVWLSSNNFSGNIPNSLAQLSHLIELHLESNQFSGPIPNLKYASIITSLDLSNNKLEGQIPETLSKFDAKAFAGNEGLCGNPLPKSCGENAGRISEEKPLSSSSPPGESQSNVSKLVVASLIAVVVFLMVFIFLSASKRREDEFSVLGREQMEEVVEVHVPSSGGGHDKQSSRRGGDSKRGSQQGKAGMSDLVVVNEDKGTFGLADLMKAAAEVLGNGGLGSAYKAVMSNGLSVVVKRMREMNKLGKDGFDAEMRRLGRLRHQNILTPLAYHYRREEKLLVSEYIPKGSLLYVLHGDRGACHADLNWATRLRIVQGIARGLGFLHSEFATYDLPHGNLKSSNVLLSDNYEPLLSDYAFHPLINPNNATQAMFAYKSPEYGQYQEVSPKSDVYCLGIIILEIMTSKFPSHYLTNGKGGTDVVQWVSSAISEKREAELIDPEIANDTGALNHMVQLLIIGADCTHNNPQQRPEMREAIRRIEEI 622
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1621492 1623820 + ClCG11G001350.2 Cla11g00126 283948
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla11g00126 622 ProSiteProfiles Protein kinase domain profile. 349 622 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla11g00126 622 Gene3D Phosphorylase Kinase; domain 1 317 424 - -
Cla11g00126 622 PANTHER LEUCINE-RICH REPEAT PROTEIN KINASE FAMILY PROTEIN 7 622 - -
Cla11g00126 622 SUPERFAMILY L domain-like 23 206 - -
Cla11g00126 622 Pfam Leucine rich repeat N-terminal domain 24 62 IPR013210 -
Cla11g00126 622 Gene3D Ribonuclease Inhibitor 183 225 IPR032675 -
Cla11g00126 622 Gene3D Ribonuclease Inhibitor 23 182 IPR032675 -
Cla11g00126 622 MobiDBLite consensus disorder prediction 298 329 - -
Cla11g00126 622 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 7 622 - -
Cla11g00126 622 Gene3D Transferase(Phosphotransferase) domain 1 425 622 - -
Cla11g00126 622 MobiDBLite consensus disorder prediction 230 250 - -
Cla11g00126 622 MobiDBLite consensus disorder prediction 236 250 - -
Cla11g00126 622 SUPERFAMILY Protein kinase-like (PK-like) 353 618 IPR011009 -
Cla11g00126 622 Pfam Leucine rich repeat 114 173 IPR001611 GO:0005515
Cla11g00126 622 Pfam Protein kinase domain 353 616 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla08g01254 Cla-Chr8:25459986 Cla11g00126 Cla-Chr11:1621492 2.23E-142 dispersed
Cla10g01851 Cla-Chr10:34432345 Cla11g00126 Cla-Chr11:1621492 2.62E-110 dispersed
Cla11g00126 Cla-Chr11:1621492 Cla06g01042 Cla-Chr6:22563430 9.15E-115 dispersed
Cla11g00126 Cla-Chr11:1621492 Cla07g01399 Cla-Chr7:31128770 1.32E-139 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80908 PF00069 Pkinase 8.60E-26 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla11g00126 - - cmo:103498999 1074.69