Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla11g00142 ATGCCGGTGCATCTCACACCCAATGCAATCTCTGCCATTGTCGCTGGTGACGTTAATTCCAAGCCTCTGGTGCAGGTCCTAGATATCAAGCTGATTGGTAACGCGCAGGAGAGGTACAGCCTCTTGATCTCCGATGCGGTTTCTGCTGAGCAGGCTATGCTCGCAACTCAGCTTAATGATATTGTTAAGACTGGACGAGTCAAGAAAGGATCCGTTATCCAGTTGATCGATTATGTCTGCAGTCCCATCAAGAACCGCAAGATTATTGTTGTGCTCTGCCTGGAAACTATTATATTGGATTGTGAGATAATCGGGAATCCAAAATCATCTGCTCAATCAGAGAATTTTGCACAAAAGGCAACGCGATCTGGAAATTTAGAGCAGCCTGCCAATGGTAATGGTCATTTGGGTGCCAGAAATCCAGTTCAGGATGTGCAGAGCTTCCAAGCTACAGTTCAACCTCCATATCAGCCACCTCCAAATTATAAAAATCACGGTGCAATCATTAAGAATGAGGCACCGGCTCGTATAATTCCCATAGCTGCGCTGAATCCTTATCAGGGACGATGGGCTATAAAAGCAAGAGTTACTGCAAAGGGTGATCTCCGTCGCTATAATAATGCGAAAGGAGATGGTAAAGTTTTCTCTTTTGACCTCCTTGATTCTGATGGAGGAGAGATACGTGTGACTTGCTTCAATGCTGTTGTGGATCGTTTCTACGAGGTCATAGAAGTTGGTAAAGTCTACATGATTTCTAAAGGTAGCCTAAAACCGGCGCGGAAGGATTTCAATCATCTAAAGAATGAATGGGAGGTTTTCTTGGAGGCATCTTCCACTGTGGAAGTTTGCCCAGATGAAGATGATACCATACCAAGACAGCAGTTCTCTTTTAGACCTATCAGTGATATTGAGAATGCTGAAACCAACTCTATTCTGGACGTTATTGGTATTGTAACATCTGTCAATCCATCAATTCCTGTTTTGAGAAAAAATGGTATGGAAACTCAAAGAAGAGTTGTGAATTTGAAGGATGCGTCTGGCAGGAGTATTGAGCTGACACTCTGGGGGGATTTTTGCAACAAAGAAGGTCAAAAATTGCAAGAAATAATTTACTCGGGCCTTTCTCCAGTGTTAGCTGTGAAATCTGGGAAGGTAAGTGATTTCACTGGGAAATCCATTGGGACAATTTCTTCTACTCAGCTTTTCATAAATCCAGATCTTTCTGAGGCTCACATCTTGAGGAACTGGTACGATGGTGGTGGGAAGAATACTACTTCTCTATCTATTTCTAAAGAAATCATGCCAGGATCTGCCAAGAATGAGATTCGGAAGACTGTGTCTCAGATTAAAGATGAAGGACTTGGCAGAGCTGATAAGCCAGATTGGATAACGGTGAAAGCAACAATATCCTTTATCAAAACAGATTCTTTCTGCTACACAGCATGTCCATTAATGATCGGAGATCGACAATGCAACAAGAAGGTGACTAGATCAGGAAACTCAAAGTGGCTGTGTGACAGGTGCAATCAAGAATTTGAGGATTGCGATTATAGATATCTTCTTCAAGCCCAAATCCAAGATCATACTGGATTGACATGGGTGACAGCCTTCCAGGAAACTGGTGAAGAGATTCTGGGTGTTTCAGCCAAGGAGTTGTACATGTTGAAGTATGAAGAGCAAGACGATGTCAAGCTCAAAATTAAGGAGGAGTCGTATGGGGATGAACAGAGGGTGAAAAATACTGTAGTCAAGGCAGATAAGTGTGTGCTTTTCTCGGTTGAATGCCGTGGAGGACTTCGAGCACATCAAGAAGCTCAAGTCCGCTTGACGGGATCGAAATTGGAGACGCCGATAACTGCACCCAAGATAGCAGTGACGACTACTCCACCGGCGGCAATGCTGAGCAAGAAATTCTTTAGAGAAGGACTAACTCCAGGCCCGGCAGCTTCAGCCACCTCAGGAAGCACCATGGAAGCCGTCAGTGCAGTTGCAGCGAGTCCAGCAACTGCCTTCTCCTTCAAAGAAGCTCGCACTTGA 2037 44.28 MPVHLTPNAISAIVAGDVNSKPLVQVLDIKLIGNAQERYSLLISDAVSAEQAMLATQLNDIVKTGRVKKGSVIQLIDYVCSPIKNRKIIVVLCLETIILDCEIIGNPKSSAQSENFAQKATRSGNLEQPANGNGHLGARNPVQDVQSFQATVQPPYQPPPNYKNHGAIIKNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNAKGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEVIEVGKVYMISKGSLKPARKDFNHLKNEWEVFLEASSTVEVCPDEDDTIPRQQFSFRPISDIENAETNSILDVIGIVTSVNPSIPVLRKNGMETQRRVVNLKDASGRSIELTLWGDFCNKEGQKLQEIIYSGLSPVLAVKSGKVSDFTGKSIGTISSTQLFINPDLSEAHILRNWYDGGGKNTTSLSISKEIMPGSAKNEIRKTVSQIKDEGLGRADKPDWITVKATISFIKTDSFCYTACPLMIGDRQCNKKVTRSGNSKWLCDRCNQEFEDCDYRYLLQAQIQDHTGLTWVTAFQETGEEILGVSAKELYMLKYEEQDDVKLKIKEESYGDEQRVKNTVVKADKCVLFSVECRGGLRAHQEAQVRLTGSKLETPITAPKIAVTTTPPAAMLSKKFFREGLTPGPAASATSGSTMEAVSAVAASPATAFSFKEART 678
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1729656 1734497 + ClCG11G001530.1 Cla11g00142 283964
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla11g00142 678 SUPERFAMILY Nucleic acid-binding proteins 176 290 IPR012340 -
Cla11g00142 678 CDD RPA1_DBD_B 311 418 - -
Cla11g00142 678 CDD RPA1_DBD_A 179 281 - -
Cla11g00142 678 Gene3D - 289 429 IPR012340 -
Cla11g00142 678 PANTHER REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT A 2 594 - -
Cla11g00142 678 Pfam OB-fold nucleic acid binding domain 191 262 IPR004365 GO:0003676
Cla11g00142 678 Pfam Replication protein A OB domain 300 404 IPR031657 -
Cla11g00142 678 Gene3D - 176 286 IPR012340 -
Cla11g00142 678 TIGRFAM rpa1: replication factor-a protein 1 (rpa1) 4 587 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Cla11g00142 678 SUPERFAMILY Nucleic acid-binding proteins 294 424 IPR012340 -
Cla11g00142 678 SUPERFAMILY Nucleic acid-binding proteins 443 586 IPR012340 -
Cla11g00142 678 CDD RPA1N 9 98 IPR007199 GO:0003677|GO:0005634|GO:0006260
Cla11g00142 678 Pfam Replication factor-A protein 1, N-terminal domain 5 97 IPR007199 GO:0003677|GO:0005634|GO:0006260
Cla11g00142 678 PANTHER REPLICATION FACTOR A 1, RFA1 2 594 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Cla11g00142 678 Pfam Replication factor-A C terminal domain 462 587 IPR013955 -
Cla11g00142 678 Gene3D - 3 111 IPR012340 -
Cla11g00142 678 SUPERFAMILY Nucleic acid-binding proteins 1 106 IPR012340 -
Cla11g00142 678 Gene3D - 430 596 IPR012340 -
Cla11g00142 678 CDD RPA1_DBD_C 446 587 IPR013955 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g01537 Cla-Chr6:28963821 Cla11g00142 Cla-Chr11:1729656 6.40E-90 dispersed
Cla10g00108 Cla-Chr10:1056657 Cla11g00142 Cla-Chr11:1729656 1.25E-20 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla11g00142 K07466 - csv:101207583 1119.76