Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla11g00146 | ATGGATTTGTTGATGAATATGATGGCCATCCCACTCGAGAACTTTTCCCAGAAACATCTTGATCAGGACCCTGTTCATTCAGTATTTCCATTTTCTGTTGATTGTACAACGTGGCGAAACTCAAACGAAAAGAAGATGACAATGACTTTGTCTGATAATATTAGTCTCAAACTTGAAACTCCCCCAAAACCTCATCACAAGCAATTAGGGGTAGGTCTTCAGTTACCAGATCAGGAGTCATCCACAGCCCACTCAATTGGTCAATCTCTACATAGAGTGTGTGCTATGGAAGTGCAAAATGCTCAAGAGCAGTGTATTTCTTCAGAATCCGGTCAAGATGAAAACTGTGGCGAGAGTGTGGAGAATCAGTTGAAACCGGCTATTTTGTTTAGCAACCCTGAATTTATGTTCAATTCTCTCCAAGTCGATGGCAGCCATTCAATGACTCGAGTATCATACCCGTACATTGATCCTTACTATGGTGGCCTATTGTGCGGTGGCTACAGTCAGCAGGGTTTTAATAGTCAGGCTCAAGTAAATCCCAATGCTGTTGGGACTGCACCTGCAAGAGTCCCCATATCGTATGGTCTTGCTGAAGATGGGCCCATCTATGTCAATGCAAAACAATACCATGGAATTCTTAGGAGGAGGCAGTCTCGTGCAAAGCTTGAGGCTCAAAACAAAGTCATAAGAAATCGGAAGACAATGATGTCATTTCACATTTACACACCAATTCTCCCTTCATTGCAGCCATATCTTCACGAGTCTCGACATCTTCATGCACTAAACAGAGTGAGGGGATCCGGGGGACGCTTTCTCAGTGTGAAAAAGAACCAACCATCTGATCGTACAAATCCTCCGACCACATTGTGCCAACAGAAAAGTACACCAGACTCCAATACTTATAGCCCTGAAACAGGTGACCATGGCACCATGACTGCAACTTGCTCCGAGATCACAAGCATCTCTAATGGATCAGTTATGTTCGGGTGGTCTGACAGTCAGTTCTCCGCTGCCTCCTCTAATGCGAGTGGGAGAATGGAGCAGTATCGCGGACGCTATTTTGGAGTGGGCAGAAAGACAGCCATTAATGTACTTCAAAATATTGGCATGATGCCCTTCAATAATTTGCTTGGGTTTAAAACAAACCATATTTTAGAAGCAGATGACAATGGATTAGACCAAAGTCGCACGCTGCCTTGTGCGAGAAAGAGAAGCCCAATCTTCAAAAGCTCGGACCGTAAGAACACTCGTCTTCCGCTACTGAAAATTTTTTGGGCGTTTGATTTTCATTTCTCTGTGACTTTCTTCTCCATAGAAATGGGTTTTCTTGTTCTTCTTATTGCATTTTCTTCTGATGCTTTTCATCCTCCATTTCTTCTTCCTTCCTTTTTTTCGATTTCCTTAACCATTTCTTGCTGTTTGATTCTTCTTTTTCCGAATTCAAGCTTAAAAAGTGAGCTCTGGATTCCAGCAAATATGGATGGGGGAGCAGCTTACAATCCTCGGACTGTGGAAGAGGTTTTCAGGGATTTTAAAGGCCGTCGTGCCGGAATGATTAGAGCTCTCACCACTGGTCTAGTTCAATCTCCGTTTTCCTTTTCCTCCTCATCTATTTCTGGCTTTTCGTTTTCTAGTTTTAGGGTTTTCAATAGGCTTTTCATGGCGCTGCTGCCTTGTAATTTTACACTTATCTCTTGCTTTCTTCTTGCAGATGTCGAAGAATTTTACCAGCTTTGCGACCCTGAGAAGGAAAACCTCTGCCTTTATGGGTTCCCTAATGAACAGTGGGAAGTTAATTTGCCTGCTGAGGAAGTACCTCCAGAGCTTCCGGAACCAGCATTGGGCATTAACTTTGCTAGAGATGGGATGCAAGAAAAGGATTGGCTATCCCTTGTTGCCGTTCATAGTGACGCCTGGCTTCTGGCTGTGGCTTTCTATTTTGGTGCTAGATTTGGCTTTGATAAATCGGACAGAAAAGTAAAGTCCGTGTCTCTCTTACAAAAAGATCAAGGAAAAGCAGGTGGCTTGGGAAAATGGACACAAATTCATGTATTTTATTTCTTGAACCGTGATCATTTTCTCTTGAAACGCCTTTTTACAATGATAAATGATCTACCCACAATATTTGAGGTTGTGACGGGAAGTGTGAAGAAACAGGGAAAAGACAAGTCATTAGTTTCAAATAACAGCAGCAACAAATCCAAGATGGGCCCAAAAGGGAAGCAAATTATTGATGTAGACATTGTTCATTTTGCAACGAGGTTATTGAATTTTAATACATTACACAAGATGGAATTTATCTGCAGCTCTGTATGTCCAGTCAGTTTTCGTCTATATATGATCCGAGGTTCTGAATCAAGCAAATTGTCCAAGGGGTTGGCAAAAGATGAGGATGAGGGACTGGACGAGGAAGATGAGGAGGAGCACGGGGAGACCTTATGTGGGGCATGTGGGGAGAATTATGCATCAGACGAGTTCTGGATATGTTGTGACATCTGTGAGAAGTGGTTCCATGGCAAGTGTGTGAAGATCACTCCTGCAAGGGCTGAACATATCAAGCAGTATAAATGCCCCTCGTGCAGCAATAAGAGAGCACGACCCTGA | 2607 | 43.04 | MDLLMNMMAIPLENFSQKHLDQDPVHSVFPFSVDCTTWRNSNEKKMTMTLSDNISLKLETPPKPHHKQLGVGLQLPDQESSTAHSIGQSLHRVCAMEVQNAQEQCISSESGQDENCGESVENQLKPAILFSNPEFMFNSLQVDGSHSMTRVSYPYIDPYYGGLLCGGYSQQGFNSQAQVNPNAVGTAPARVPISYGLAEDGPIYVNAKQYHGILRRRQSRAKLEAQNKVIRNRKTMMSFHIYTPILPSLQPYLHESRHLHALNRVRGSGGRFLSVKKNQPSDRTNPPTTLCQQKSTPDSNTYSPETGDHGTMTATCSEITSISNGSVMFGWSDSQFSAASSNASGRMEQYRGRYFGVGRKTAINVLQNIGMMPFNNLLGFKTNHILEADDNGLDQSRTLPCARKRSPIFKSSDRKNTRLPLLKIFWAFDFHFSVTFFSIEMGFLVLLIAFSSDAFHPPFLLPSFFSISLTISCCLILLFPNSSLKSELWIPANMDGGAAYNPRTVEEVFRDFKGRRAGMIRALTTGLVQSPFSFSSSSISGFSFSSFRVFNRLFMALLPCNFTLISCFLLADVEEFYQLCDPEKENLCLYGFPNEQWEVNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDAWLLAVAFYFGARFGFDKSDRKVKSVSLLQKDQGKAGGLGKWTQIHVFYFLNRDHFLLKRLFTMINDLPTIFEVVTGSVKKQGKDKSLVSNNSSNKSKMGPKGKQIIDVDIVHFATRLLNFNTLHKMEFICSSVCPVSFRLYMIRGSESSKLSKGLAKDEDEGLDEEDEEEHGETLCGACGENYASDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRARP | 868 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 1751974 | 1761225 | + | ClCG11G001580.2 | Cla11g00146 | 283968 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla11g00146 | 868 | Pfam | PHD-finger | 815 | 864 | IPR019787 | - | |
Cla11g00146 | 868 | ProSitePatterns | NF-YA/HAP2 subunit signature. | 204 | 224 | IPR018362 | GO:0003677|GO:0016602 | |
Cla11g00146 | 868 | ProSiteProfiles | NF-YA/HAP2 family profile. | 199 | 275 | IPR001289 | GO:0003700|GO:0006355 | |
Cla11g00146 | 868 | PANTHER | PHD FINGER PROTEIN ALFIN-LIKE 3-LIKE ISOFORM X1 | 496 | 526 | - | - | |
Cla11g00146 | 868 | SMART | cbf3 | 198 | 275 | IPR001289 | GO:0003700|GO:0006355 | |
Cla11g00146 | 868 | MobiDBLite | consensus disorder prediction | 274 | 312 | - | - | |
Cla11g00146 | 868 | ProSitePatterns | Zinc finger PHD-type signature. | 815 | 861 | IPR019786 | - | |
Cla11g00146 | 868 | ProSiteProfiles | Zinc finger PHD-type profile. | 812 | 864 | IPR019787 | - | |
Cla11g00146 | 868 | Pfam | Alfin | 569 | 660 | IPR021998 | GO:0006355|GO:0042393 | |
Cla11g00146 | 868 | Pfam | CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B | 202 | 272 | IPR001289 | GO:0003700|GO:0006355 | |
Cla11g00146 | 868 | PANTHER | PHD FINGER PROTEIN ALFIN-LIKE 3-LIKE ISOFORM X1 | 680 | 868 | - | - | |
Cla11g00146 | 868 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 805 | 863 | IPR013083 | - | |
Cla11g00146 | 868 | CDD | PHD_AL_plant | 814 | 864 | IPR044104 | - | |
Cla11g00146 | 868 | Gene3D | - | 199 | 277 | - | - | |
Cla11g00146 | 868 | MobiDBLite | consensus disorder prediction | 270 | 312 | - | - | |
Cla11g00146 | 868 | PANTHER | CPG BINDING PROTEIN | 680 | 868 | IPR045104 | GO:0006355|GO:0042393 | |
Cla11g00146 | 868 | PANTHER | CPG BINDING PROTEIN | 569 | 660 | IPR045104 | GO:0006355|GO:0042393 | |
Cla11g00146 | 868 | SUPERFAMILY | FYVE/PHD zinc finger | 804 | 865 | IPR011011 | - | |
Cla11g00146 | 868 | PANTHER | CPG BINDING PROTEIN | 496 | 526 | IPR045104 | GO:0006355|GO:0042393 | |
Cla11g00146 | 868 | PANTHER | PHD FINGER PROTEIN ALFIN-LIKE 3-LIKE ISOFORM X1 | 569 | 660 | - | - | |
Cla11g00146 | 868 | SMART | PHD_3 | 814 | 862 | IPR001965 | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cla03g01469 | Cla11g00146 | CCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla10g02093 | Cla-Chr10:36624060 | Cla11g00146 | Cla-Chr11:1751974 | 1.14E-65 | dispersed | |
Cla11g00146 | Cla-Chr11:1751974 | Cla09g00377 | Cla-Chr9:3676310 | 4.70E-28 | dispersed | |
Cla11g00146 | Cla-Chr11:1751974 | Cla03g01469 | Cla-Chr3:30202335 | 1.39E-16 | wgd | |
Cla11g00146 | Cla-Chr11:1751974 | Cla09g00078 | Cla-Chr9:768976 | 1.85E-100 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
61988 | PF12165 | Alfin | 5.40E-48 | No_clan | Cla | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla11g00146 | - | - | jre:109008877 | 400.593 |