Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla11g00146 ATGGATTTGTTGATGAATATGATGGCCATCCCACTCGAGAACTTTTCCCAGAAACATCTTGATCAGGACCCTGTTCATTCAGTATTTCCATTTTCTGTTGATTGTACAACGTGGCGAAACTCAAACGAAAAGAAGATGACAATGACTTTGTCTGATAATATTAGTCTCAAACTTGAAACTCCCCCAAAACCTCATCACAAGCAATTAGGGGTAGGTCTTCAGTTACCAGATCAGGAGTCATCCACAGCCCACTCAATTGGTCAATCTCTACATAGAGTGTGTGCTATGGAAGTGCAAAATGCTCAAGAGCAGTGTATTTCTTCAGAATCCGGTCAAGATGAAAACTGTGGCGAGAGTGTGGAGAATCAGTTGAAACCGGCTATTTTGTTTAGCAACCCTGAATTTATGTTCAATTCTCTCCAAGTCGATGGCAGCCATTCAATGACTCGAGTATCATACCCGTACATTGATCCTTACTATGGTGGCCTATTGTGCGGTGGCTACAGTCAGCAGGGTTTTAATAGTCAGGCTCAAGTAAATCCCAATGCTGTTGGGACTGCACCTGCAAGAGTCCCCATATCGTATGGTCTTGCTGAAGATGGGCCCATCTATGTCAATGCAAAACAATACCATGGAATTCTTAGGAGGAGGCAGTCTCGTGCAAAGCTTGAGGCTCAAAACAAAGTCATAAGAAATCGGAAGACAATGATGTCATTTCACATTTACACACCAATTCTCCCTTCATTGCAGCCATATCTTCACGAGTCTCGACATCTTCATGCACTAAACAGAGTGAGGGGATCCGGGGGACGCTTTCTCAGTGTGAAAAAGAACCAACCATCTGATCGTACAAATCCTCCGACCACATTGTGCCAACAGAAAAGTACACCAGACTCCAATACTTATAGCCCTGAAACAGGTGACCATGGCACCATGACTGCAACTTGCTCCGAGATCACAAGCATCTCTAATGGATCAGTTATGTTCGGGTGGTCTGACAGTCAGTTCTCCGCTGCCTCCTCTAATGCGAGTGGGAGAATGGAGCAGTATCGCGGACGCTATTTTGGAGTGGGCAGAAAGACAGCCATTAATGTACTTCAAAATATTGGCATGATGCCCTTCAATAATTTGCTTGGGTTTAAAACAAACCATATTTTAGAAGCAGATGACAATGGATTAGACCAAAGTCGCACGCTGCCTTGTGCGAGAAAGAGAAGCCCAATCTTCAAAAGCTCGGACCGTAAGAACACTCGTCTTCCGCTACTGAAAATTTTTTGGGCGTTTGATTTTCATTTCTCTGTGACTTTCTTCTCCATAGAAATGGGTTTTCTTGTTCTTCTTATTGCATTTTCTTCTGATGCTTTTCATCCTCCATTTCTTCTTCCTTCCTTTTTTTCGATTTCCTTAACCATTTCTTGCTGTTTGATTCTTCTTTTTCCGAATTCAAGCTTAAAAAGTGAGCTCTGGATTCCAGCAAATATGGATGGGGGAGCAGCTTACAATCCTCGGACTGTGGAAGAGGTTTTCAGGGATTTTAAAGGCCGTCGTGCCGGAATGATTAGAGCTCTCACCACTGGTCTAGTTCAATCTCCGTTTTCCTTTTCCTCCTCATCTATTTCTGGCTTTTCGTTTTCTAGTTTTAGGGTTTTCAATAGGCTTTTCATGGCGCTGCTGCCTTGTAATTTTACACTTATCTCTTGCTTTCTTCTTGCAGATGTCGAAGAATTTTACCAGCTTTGCGACCCTGAGAAGGAAAACCTCTGCCTTTATGGGTTCCCTAATGAACAGTGGGAAGTTAATTTGCCTGCTGAGGAAGTACCTCCAGAGCTTCCGGAACCAGCATTGGGCATTAACTTTGCTAGAGATGGGATGCAAGAAAAGGATTGGCTATCCCTTGTTGCCGTTCATAGTGACGCCTGGCTTCTGGCTGTGGCTTTCTATTTTGGTGCTAGATTTGGCTTTGATAAATCGGACAGAAAAGTAAAGTCCGTGTCTCTCTTACAAAAAGATCAAGGAAAAGCAGGTGGCTTGGGAAAATGGACACAAATTCATGTATTTTATTTCTTGAACCGTGATCATTTTCTCTTGAAACGCCTTTTTACAATGATAAATGATCTACCCACAATATTTGAGGTTGTGACGGGAAGTGTGAAGAAACAGGGAAAAGACAAGTCATTAGTTTCAAATAACAGCAGCAACAAATCCAAGATGGGCCCAAAAGGGAAGCAAATTATTGATGTAGACATTGTTCATTTTGCAACGAGGTTATTGAATTTTAATACATTACACAAGATGGAATTTATCTGCAGCTCTGTATGTCCAGTCAGTTTTCGTCTATATATGATCCGAGGTTCTGAATCAAGCAAATTGTCCAAGGGGTTGGCAAAAGATGAGGATGAGGGACTGGACGAGGAAGATGAGGAGGAGCACGGGGAGACCTTATGTGGGGCATGTGGGGAGAATTATGCATCAGACGAGTTCTGGATATGTTGTGACATCTGTGAGAAGTGGTTCCATGGCAAGTGTGTGAAGATCACTCCTGCAAGGGCTGAACATATCAAGCAGTATAAATGCCCCTCGTGCAGCAATAAGAGAGCACGACCCTGA 2607 43.04 MDLLMNMMAIPLENFSQKHLDQDPVHSVFPFSVDCTTWRNSNEKKMTMTLSDNISLKLETPPKPHHKQLGVGLQLPDQESSTAHSIGQSLHRVCAMEVQNAQEQCISSESGQDENCGESVENQLKPAILFSNPEFMFNSLQVDGSHSMTRVSYPYIDPYYGGLLCGGYSQQGFNSQAQVNPNAVGTAPARVPISYGLAEDGPIYVNAKQYHGILRRRQSRAKLEAQNKVIRNRKTMMSFHIYTPILPSLQPYLHESRHLHALNRVRGSGGRFLSVKKNQPSDRTNPPTTLCQQKSTPDSNTYSPETGDHGTMTATCSEITSISNGSVMFGWSDSQFSAASSNASGRMEQYRGRYFGVGRKTAINVLQNIGMMPFNNLLGFKTNHILEADDNGLDQSRTLPCARKRSPIFKSSDRKNTRLPLLKIFWAFDFHFSVTFFSIEMGFLVLLIAFSSDAFHPPFLLPSFFSISLTISCCLILLFPNSSLKSELWIPANMDGGAAYNPRTVEEVFRDFKGRRAGMIRALTTGLVQSPFSFSSSSISGFSFSSFRVFNRLFMALLPCNFTLISCFLLADVEEFYQLCDPEKENLCLYGFPNEQWEVNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDAWLLAVAFYFGARFGFDKSDRKVKSVSLLQKDQGKAGGLGKWTQIHVFYFLNRDHFLLKRLFTMINDLPTIFEVVTGSVKKQGKDKSLVSNNSSNKSKMGPKGKQIIDVDIVHFATRLLNFNTLHKMEFICSSVCPVSFRLYMIRGSESSKLSKGLAKDEDEGLDEEDEEEHGETLCGACGENYASDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRARP 868
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1751974 1761225 + ClCG11G001580.2 Cla11g00146 283968
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla11g00146 868 Pfam PHD-finger 815 864 IPR019787 -
Cla11g00146 868 ProSitePatterns NF-YA/HAP2 subunit signature. 204 224 IPR018362 GO:0003677|GO:0016602
Cla11g00146 868 ProSiteProfiles NF-YA/HAP2 family profile. 199 275 IPR001289 GO:0003700|GO:0006355
Cla11g00146 868 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 3-LIKE ISOFORM X1 496 526 - -
Cla11g00146 868 SMART cbf3 198 275 IPR001289 GO:0003700|GO:0006355
Cla11g00146 868 MobiDBLite consensus disorder prediction 274 312 - -
Cla11g00146 868 ProSitePatterns Zinc finger PHD-type signature. 815 861 IPR019786 -
Cla11g00146 868 ProSiteProfiles Zinc finger PHD-type profile. 812 864 IPR019787 -
Cla11g00146 868 Pfam Alfin 569 660 IPR021998 GO:0006355|GO:0042393
Cla11g00146 868 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 202 272 IPR001289 GO:0003700|GO:0006355
Cla11g00146 868 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 3-LIKE ISOFORM X1 680 868 - -
Cla11g00146 868 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 805 863 IPR013083 -
Cla11g00146 868 CDD PHD_AL_plant 814 864 IPR044104 -
Cla11g00146 868 Gene3D - 199 277 - -
Cla11g00146 868 MobiDBLite consensus disorder prediction 270 312 - -
Cla11g00146 868 PANTHER CPG BINDING PROTEIN 680 868 IPR045104 GO:0006355|GO:0042393
Cla11g00146 868 PANTHER CPG BINDING PROTEIN 569 660 IPR045104 GO:0006355|GO:0042393
Cla11g00146 868 SUPERFAMILY FYVE/PHD zinc finger 804 865 IPR011011 -
Cla11g00146 868 PANTHER CPG BINDING PROTEIN 496 526 IPR045104 GO:0006355|GO:0042393
Cla11g00146 868 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 3-LIKE ISOFORM X1 569 660 - -
Cla11g00146 868 SMART PHD_3 814 862 IPR001965 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla03g01469 Cla11g00146 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla10g02093 Cla-Chr10:36624060 Cla11g00146 Cla-Chr11:1751974 1.14E-65 dispersed
Cla11g00146 Cla-Chr11:1751974 Cla09g00377 Cla-Chr9:3676310 4.70E-28 dispersed
Cla11g00146 Cla-Chr11:1751974 Cla03g01469 Cla-Chr3:30202335 1.39E-16 wgd
Cla11g00146 Cla-Chr11:1751974 Cla09g00078 Cla-Chr9:768976 1.85E-100 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61988 PF12165 Alfin 5.40E-48 No_clan Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla11g00146 - - jre:109008877 400.593