Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla11g00146 ATGGATTTGTTGATGAATATGATGGCCATCCCACTCGAGAACTTTTCCCAGAAACATCTTGATCAGGACCCTGTTCATTCAGTATTTCCATTTTCTGTTGATTGTACAACGTGGCGAAACTCAAACGAAAAGAAGATGACAATGACTTTGTCTGATAATATTAGTCTCAAACTTGAAACTCCCCCAAAACCTCATCACAAGCAATTAGGGGTAGGTCTTCAGTTACCAGATCAGGAGTCATCCACAGCCCACTCAATTGGTCAATCTCTACATAGAGTGTGTGCTATGGAAGTGCAAAATGCTCAAGAGCAGTGTATTTCTTCAGAATCCGGTCAAGATGAAAACTGTGGCGAGAGTGTGGAGAATCAGTTGAAACCGGCTATTTTGTTTAGCAACCCTGAATTTATGTTCAATTCTCTCCAAGTCGATGGCAGCCATTCAATGACTCGAGTATCATACCCGTACATTGATCCTTACTATGGTGGCCTATTGTGCGGTGGCTACAGTCAGCAGGGTTTTAATAGTCAGGCTCAAGTAAATCCCAATGCTGTTGGGACTGCACCTGCAAGAGTCCCCATATCGTATGGTCTTGCTGAAGATGGGCCCATCTATGTCAATGCAAAACAATACCATGGAATTCTTAGGAGGAGGCAGTCTCGTGCAAAGCTTGAGGCTCAAAACAAAGTCATAAGAAATCGGAAGACAATGATGTCATTTCACATTTACACACCAATTCTCCCTTCATTGCAGCCATATCTTCACGAGTCTCGACATCTTCATGCACTAAACAGAGTGAGGGGATCCGGGGGACGCTTTCTCAGTGTGAAAAAGAACCAACCATCTGATCGTACAAATCCTCCGACCACATTGTGCCAACAGAAAAGTACACCAGACTCCAATACTTATAGCCCTGAAACAGGTGACCATGGCACCATGACTGCAACTTGCTCCGAGATCACAAGCATCTCTAATGGATCAGTTATGTTCGGGTGGTCTGACAGTCAGTTCTCCGCTGCCTCCTCTAATGCGAGTGGGAGAATGGAGCAGTATCGCGGACGCTATTTTGGAGTGGGCAGAAAGACAGCCATTAATGTACTTCAAAATATTGGCATGATGCCCTTCAATAATTTGCTTGGGTTTAAAACAAACCATATTTTAGAAGCAGATGACAATGGATTAGACCAAAGTCGCACGCTGCCTTGTGCGAGAAAGAGAAGCCCAATCTTCAAAAGCTCGGACCGTAAGAACACTCGTCTTCCGCTACTGAAAATTTTTTGGGCGTTTGATTTTCATTTCTCTGTGACTTTCTTCTCCATAGAAATGGGTTTTCTTGTTCTTCTTATTGCATTTTCTTCTGATGCTTTTCATCCTCCATTTCTTCTTCCTTCCTTTTTTTCGATTTCCTTAACCATTTCTTGCTGTTTGATTCTTCTTTTTCCGAATTCAAGCTTAAAAAGTGAGCTCTGGATTCCAGCAAATATGGATGGGGGAGCAGCTTACAATCCTCGGACTGTGGAAGAGGTTTTCAGGGATTTTAAAGGCCGTCGTGCCGGAATGATTAGAGCTCTCACCACTGGTCTAGTTCAATCTCCGTTTTCCTTTTCCTCCTCATCTATTTCTGGCTTTTCGTTTTCTAGTTTTAGGGTTTTCAATAGGCTTTTCATGGCGCTGCTGCCTTGTAATTTTACACTTATCTCTTGCTTTCTTCTTGCAGATGTCGAAGAATTTTACCAGCTTTGCGACCCTGAGAAGGAAAACCTCTGCCTTTATGGGTTCCCTAATGAACAGTGGGAAGTTAATTTGCCTGCTGAGGAAGTACCTCCAGAGCTTCCGGAACCAGCATTGGGCATTAACTTTGCTAGAGATGGGATGCAAGAAAAGGATTGGCTATCCCTTGTTGCCGTTCATAGTGACGCCTGGCTTCTGGCTGTGGCTTTCTATTTTGGTGCTAGATTTGGCTTTGATAAATCGGACAGAAAAGTAAAGTCCGTGTCTCTCTTACAAAAAGATCAAGGAAAAGCAGGTGGCTTGGGAAAATGGACACAAATTCATGTATTTTATTTCTTGAACCGTGATCATTTTCTCTTGAAACGCCTTTTTACAATGATAAATGATCTACCCACAATATTTGAGGTTGTGACGGGAAGTGTGAAGAAACAGGGAAAAGACAAGTCATTAGTTTCAAATAACAGCAGCAACAAATCCAAGATGGGCCCAAAAGGGAAGCAAATTATTGATGTAGACATTGTTCATTTTGCAACGAGGTTATTGAATTTTAATACATTACACAAGATGGAATTTATCTGCAGCTCTGTATGTCCAGTCAGTTTTCGTCTATATATGATCCGAGGTTCTGAATCAAGCAAATTGTCCAAGGGGTTGGCAAAAGATGAGGATGAGGGACTGGACGAGGAAGATGAGGAGGAGCACGGGGAGACCTTATGTGGGGCATGTGGGGAGAATTATGCATCAGACGAGTTCTGGATATGTTGTGACATCTGTGAGAAGTGGTTCCATGGCAAGTGTGTGAAGATCACTCCTGCAAGGGCTGAACATATCAAGCAGTATAAATGCCCCTCGTGCAGCAATAAGAGAGCACGACCCTGA 2607 43.04 MDLLMNMMAIPLENFSQKHLDQDPVHSVFPFSVDCTTWRNSNEKKMTMTLSDNISLKLETPPKPHHKQLGVGLQLPDQESSTAHSIGQSLHRVCAMEVQNAQEQCISSESGQDENCGESVENQLKPAILFSNPEFMFNSLQVDGSHSMTRVSYPYIDPYYGGLLCGGYSQQGFNSQAQVNPNAVGTAPARVPISYGLAEDGPIYVNAKQYHGILRRRQSRAKLEAQNKVIRNRKTMMSFHIYTPILPSLQPYLHESRHLHALNRVRGSGGRFLSVKKNQPSDRTNPPTTLCQQKSTPDSNTYSPETGDHGTMTATCSEITSISNGSVMFGWSDSQFSAASSNASGRMEQYRGRYFGVGRKTAINVLQNIGMMPFNNLLGFKTNHILEADDNGLDQSRTLPCARKRSPIFKSSDRKNTRLPLLKIFWAFDFHFSVTFFSIEMGFLVLLIAFSSDAFHPPFLLPSFFSISLTISCCLILLFPNSSLKSELWIPANMDGGAAYNPRTVEEVFRDFKGRRAGMIRALTTGLVQSPFSFSSSSISGFSFSSFRVFNRLFMALLPCNFTLISCFLLADVEEFYQLCDPEKENLCLYGFPNEQWEVNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDAWLLAVAFYFGARFGFDKSDRKVKSVSLLQKDQGKAGGLGKWTQIHVFYFLNRDHFLLKRLFTMINDLPTIFEVVTGSVKKQGKDKSLVSNNSSNKSKMGPKGKQIIDVDIVHFATRLLNFNTLHKMEFICSSVCPVSFRLYMIRGSESSKLSKGLAKDEDEGLDEEDEEEHGETLCGACGENYASDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRARP 868
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1751974 1761225 + ClCG11G001580.2 Cla11g00146 283968

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla11g00146 868 Pfam PHD-finger 815 864 IPR019787 -
Cla11g00146 868 ProSitePatterns NF-YA/HAP2 subunit signature. 204 224 IPR018362 GO:0003677|GO:0016602
Cla11g00146 868 ProSiteProfiles NF-YA/HAP2 family profile. 199 275 IPR001289 GO:0003700|GO:0006355
Cla11g00146 868 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 3-LIKE ISOFORM X1 496 526 - -
Cla11g00146 868 SMART cbf3 198 275 IPR001289 GO:0003700|GO:0006355
Cla11g00146 868 MobiDBLite consensus disorder prediction 274 312 - -
Cla11g00146 868 ProSitePatterns Zinc finger PHD-type signature. 815 861 IPR019786 -
Cla11g00146 868 ProSiteProfiles Zinc finger PHD-type profile. 812 864 IPR019787 -
Cla11g00146 868 Pfam Alfin 569 660 IPR021998 GO:0006355|GO:0042393
Cla11g00146 868 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 202 272 IPR001289 GO:0003700|GO:0006355
Cla11g00146 868 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 3-LIKE ISOFORM X1 680 868 - -
Cla11g00146 868 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 805 863 IPR013083 -
Cla11g00146 868 CDD PHD_AL_plant 814 864 IPR044104 -
Cla11g00146 868 Gene3D - 199 277 - -
Cla11g00146 868 MobiDBLite consensus disorder prediction 270 312 - -
Cla11g00146 868 PANTHER CPG BINDING PROTEIN 680 868 IPR045104 GO:0006355|GO:0042393
Cla11g00146 868 PANTHER CPG BINDING PROTEIN 569 660 IPR045104 GO:0006355|GO:0042393
Cla11g00146 868 SUPERFAMILY FYVE/PHD zinc finger 804 865 IPR011011 -
Cla11g00146 868 PANTHER CPG BINDING PROTEIN 496 526 IPR045104 GO:0006355|GO:0042393
Cla11g00146 868 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 3-LIKE ISOFORM X1 569 660 - -
Cla11g00146 868 SMART PHD_3 814 862 IPR001965 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla11g00146 - - - jre:109008877 400.593
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cla03g01469 Cla11g00146 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla10g02093 Cla-Chr10:36624060 Cla11g00146 Cla-Chr11:1751974 1.14E-65 dispersed
Cla11g00146 Cla-Chr11:1751974 Cla09g00377 Cla-Chr9:3676310 4.70E-28 dispersed
Cla11g00146 Cla-Chr11:1751974 Cla03g01469 Cla-Chr3:30202335 1.39E-16 wgd
Cla11g00146 Cla-Chr11:1751974 Cla09g00078 Cla-Chr9:768976 1.85E-100 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi11g114 . . . Bda11g01029 Bpe01g00604 . . Bma11g00599 . . . . . . . . . . . . . . . . Cla11g00146 Cam11g0168 Cec11g0170 Cco11g0181 Clacu11g0303 Cmu11g0156 Cre11g0655 . . . Cone7ag0758 . . . . . . Bda02g00379 . . . Bma01g00252 . . . . . . . . . . Bhi06g01609 . . . . . . Cla03g01469 Cam03g1545 Cec03g1587 Cco03g1580 Clacu03g1569 Cmu03g2125 Cre03g1798 Lsi11g00171 . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla10g00714 . 99 350 Alfin-like Transcription Factor Family AT1G14510 84.1 4.1e-114 407.9
Cla08g00996 . 9 212 Alfin-like Transcription Factor Family AT1G14510 66.8 2.0e-81 299.3
Cla10g02093 . 14 251 Alfin-like Transcription Factor Family AT1G14510 59.3 5.5e-79 291.2
Cla07g00398 . 8 238 Alfin-like Transcription Factor Family AT1G14510 58.9 1.4e-77 286.6
Cla09g00078 . 10 324 Alfin-like Transcription Factor Family AT1G14510 51.1 2.3e-77 285.8
Cla10g00714 . 107 352 Alfin-like Transcription Factor Family AT5G26210 72.8 3.6e-94 341.7
Cla11g00146 CCT 494 867 Alfin-like Transcription Factor Family AT5G26210 51.3 6.2e-94 340.9
Cla08g00996 . 1 212 Alfin-like Transcription Factor Family AT5G26210 67.1 1.3e-88 323.2
Cla09g00078 . 1 326 Alfin-like Transcription Factor Family AT5G26210 50.3 1.4e-82 303.1
Cla07g00398 . 7 240 Alfin-like Transcription Factor Family AT5G26210 58.3 1.7e-80 296.2
Cla10g02093 . 14 253 Alfin-like Transcription Factor Family AT5G26210 57.1 8.6e-80 293.9
Cla10g00714 . 107 352 Alfin-like Transcription Factor Family AT3G42790 72.0 1.8e-90 329.3
Cla08g00996 . 1 212 Alfin-like Transcription Factor Family AT3G42790 66.8 1.5e-84 309.7
Cla07g00398 . 7 240 Alfin-like Transcription Factor Family AT3G42790 59.8 3.4e-81 298.5
Cla10g02093 . 22 253 Alfin-like Transcription Factor Family AT3G42790 58.3 9.4e-79 290.4
Cla07g00398 . 1 240 Alfin-like Transcription Factor Family AT5G05610 78.0 1.2e-112 402.9
Cla10g02093 . 19 254 Alfin-like Transcription Factor Family AT5G05610 75.5 4.3e-105 377.9
Cla10g00714 . 107 352 Alfin-like Transcription Factor Family AT5G05610 63.2 3.2e-84 308.5
Cla08g00996 . 8 212 Alfin-like Transcription Factor Family AT5G05610 62.2 8.5e-77 283.9
Cla07g00398 . 43 240 Alfin-like Transcription Factor Family AT3G11200 80.6 1.3e-95 346.3
Cla10g02093 . 57 254 Alfin-like Transcription Factor Family AT3G11200 76.2 2.5e-86 315.5
Cla09g00078 . 84 326 Alfin-like Transcription Factor Family AT3G11200 56.5 1.5e-70 263.1
Cla10g00714 . 142 352 Alfin-like Transcription Factor Family AT3G11200 64.2 7.4e-70 260.8
Cla08g00996 . 44 212 Alfin-like Transcription Factor Family AT3G11200 61.4 7.4e-62 234.2
Cla10g00714 . 99 259 Alfin-like Transcription Factor Family AT2G02470 85.1 1.5e-76 283.1
Cla08g00996 . 1 159 Alfin-like Transcription Factor Family AT2G02470 74.8 3.0e-64 242.3
Cla10g02093 . 14 169 Alfin-like Transcription Factor Family AT2G02470 65.4 4.8e-54 208.4
Cla11g00146 CCT 494 734 Alfin-like Transcription Factor Family AT2G02470 50.2 1.1e-53 207.2
Cla07g00398 . 8 155 Alfin-like Transcription Factor Family AT2G02470 67.5 1.1e-53 207.2
Cla09g00078 . 5 200 Alfin-like Transcription Factor Family AT2G02470 58.1 1.5e-52 203.4
Cla08g00996 . 1 160 Alfin-like Transcription Factor Family AT5G20510 77.0 7.9e-70 260.4
Cla10g00714 . 101 270 Alfin-like Transcription Factor Family AT5G20510 71.5 8.2e-67 250.4
Cla11g00146 CCT 494 736 Alfin-like Transcription Factor Family AT5G20510 50.8 1.1e-58 223.4
Cla09g00078 . 1 204 Alfin-like Transcription Factor Family AT5G20510 57.5 9.4e-55 210.3
Cla07g00398 . 7 157 Alfin-like Transcription Factor Family AT5G20510 62.4 1.1e-52 203.4
Cla10g02093 . 21 171 Alfin-like Transcription Factor Family AT5G20510 61.8 3.7e-51 198.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005775 2 4 1 1 1 1 2 1 1 0 1 1 2 0 0 2 1 5 2 1 0 1 1 1 1 0 1 1 1 2 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61988 PF12165 Alfin 5.40E-48 No_clan Cla TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla11g00146 Cla_Chr11 FPKM 0.0 0.0 0.843752 0.701328 1.107212 0.535915 0.970784 0.0 0.0 0.0