Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla11g00152 ATGACATCCGTGGCGGTTGCCGTTAACGGCGTCCGCGGCGGCAAAGGCGGCGGAGCAAGCCGCCGCGCTGTCAGATGGGCCGTCGAGAATCTCTTGCCGACCGCCGATCGCTTCATTTTGGTTCACGTTATGCCCAAAATCACCTCCATCCCCACCCCAATGGGGGATCTTGTTGCTGTCTCTGAACTTGATGCAGATGTGGTAGCTCTTTATGTTCATGATATGAAAAAGAAATATGAACAAGTTTTTGTACCTTTTAAGAAGTTATGTAGAAGAGAAAAGTTTCTTCTTCTGGTAGAAACTTTGATTTTGGAGGATGACAATCCTGCCACTGCACTTTTGAGATATGCATCTCAATCTGGGATTAAATGCTTGGTTTTGGGTTCTTGTTTTAGAACTTGCATAGCAAGGAAGATAAAAGGGGATTCAGTACCCTCTGCTATTATGAGAACTGCTAGTTCTTTTGATATTTATGTTATATATAAGAGGAGAGTTATCACACGAACCGCTAGTACTGCTCCATCTAGTGAAACTGACTCGAGGCAGTGGATGCTTGGTGACACTGATTATTACAGGGGTTTCAGTGCTGTTAGTGAAAAATTATCAGGAACTTCCTCTCCTTCTTCCTTGTCGATTGGACATCGAAGGGGTGATAGCCTCGAAGTTAACTCTACTGAGCAACTGAACTCTTTAAGCACTCTGACTGAGGAGGTGGGATTTTGTCGATATTTCGTGGTGATGCGACGGCGAGTCTTAAATGAAGGTCCTGCATTGCAGGAAGATATGCGGGCTGAAGTTGAATCTCTGCAGCTAGAACTAGAGACCACTGTTTCCTTGTACAATCAAGCTTGTGAAGAACTAGTACATGCTCAGAAGAAGGTTCAGTCACTTACATCAGAATGCCTTGAAGAATCAAGAAAAGTGAATGCTGCTTTGGAAAGGGAACAATCTTTGAGGAAAGTTGCTGCTAAAGAGAAAGCAAAGCATTTGGAAGCCATTAAAGAGCTTGAGGAGGCTAAAGACTTGCTGGCTAAAGAAGCTTATGAGAGGCAGCTGGCTGAGCTTAATGCCATAAAGGAGTCCGTGGAGAAGCAGAAAATTCTTGATACTCTTCTGACTAATGATAGGAGGTACAGAAGATATACCACTGCCGAAATAGAAGCTGCAACAAATTTCTTCGACGAAGTTAATGTGATTGGCATCGGAGGATATGGGAAAGTCTACAAATGCAGTCTCGATCATACACCTGTAGCCATTAAGGTTTTTCAACACGACATATTCGAGAAAAAAGATGAGTTTCTGAAAGAGGTTGAAATTCTAAGTCAGATACGACATCTGCACGTGGTTTTACTGCTTGGAGCTTGTCCCGAGCGAGGTTGTTTGATCTATGAATACATGGAAAATGGAAGCTTAGATGATCATATCTTGCTCCGGAAAGGAAAAGCTCCCCTCCCTTGGTCTATTAGATTTAGAATAGTTTTTCAAGTAGCTTCTGGCCTTGCATTTTTACACAATTCAAAGCCAGAGCCTATCATTCATAGAGATCTCAAACCGGGTAATATCTTACTGGACAGAAACTTTGTAAGTAAAATCTCAGATGTTGGAATGGCTAAGATCATCGGCGATATTGTGCCGGACAATGTCACGGAGTACCGAAACACCATTCTTGCCGGTACTCTACATTACATGGATCCTGAATATCAGAGAACTGGCACACTCCGGCCAAAGTCAGATACGTACGCACTTGGGGTAACAATTCTGCAGTTGTTGACCGGGCGAGAACCACACGGTCTTCTTCTGGCTATTGAAAACTCCATCGCAAGCGCGTCCCTTGCAGATATTCTAGACAAGTCAATAACTGACTGGCCTCTGGCTGAAGCTGAAGAGTTAGCTCAACTCGCACTCAAGTGCTTGAAACTTAGATGCAGGGATAGGCCAGATCTTGAATCTGAAGTTCTTCCAGTCCTTAAAAGGCTTGTTGATTTTGCAGATTCTTGTCAAAATGAAGGCAAAAATCCTGCTAATCCCCCAAGCCACTACTTCTGCCCAATCCTACAGGAAATCATGGAGGACCCTTATATAGCAGCCGATGGCTTTACTTATGAGTATGTAGCCATTAAAGCATGGCTCGAGAAATACGACGTATCGCCGGTGACAAAGCTTAAGCTTCAGCATTCTATTTTTATTCCAAACCACACTCTGCTCTCTGCCATACTAGAGTGGAAGTCAAGAGTGACATTTCCATCTTCCTAA 2253 43.59 MTSVAVAVNGVRGGKGGGASRRAVRWAVENLLPTADRFILVHVMPKITSIPTPMGDLVAVSELDADVVALYVHDMKKKYEQVFVPFKKLCRREKFLLLVETLILEDDNPATALLRYASQSGIKCLVLGSCFRTCIARKIKGDSVPSAIMRTASSFDIYVIYKRRVITRTASTAPSSETDSRQWMLGDTDYYRGFSAVSEKLSGTSSPSSLSIGHRRGDSLEVNSTEQLNSLSTLTEEVGFCRYFVVMRRRVLNEGPALQEDMRAEVESLQLELETTVSLYNQACEELVHAQKKVQSLTSECLEESRKVNAALEREQSLRKVAAKEKAKHLEAIKELEEAKDLLAKEAYERQLAELNAIKESVEKQKILDTLLTNDRRYRRYTTAEIEAATNFFDEVNVIGIGGYGKVYKCSLDHTPVAIKVFQHDIFEKKDEFLKEVEILSQIRHLHVVLLLGACPERGCLIYEYMENGSLDDHILLRKGKAPLPWSIRFRIVFQVASGLAFLHNSKPEPIIHRDLKPGNILLDRNFVSKISDVGMAKIIGDIVPDNVTEYRNTILAGTLHYMDPEYQRTGTLRPKSDTYALGVTILQLLTGREPHGLLLAIENSIASASLADILDKSITDWPLAEAEELAQLALKCLKLRCRDRPDLESEVLPVLKRLVDFADSCQNEGKNPANPPSHYFCPILQEIMEDPYIAADGFTYEYVAIKAWLEKYDVSPVTKLKLQHSIFIPNHTLLSAILEWKSRVTFPSS 750
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1806239 1811966 - ClCG11G001660.1 Cla11g00152 283974
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla11g00152 750 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 16 142 - -
Cla11g00152 750 SUPERFAMILY RING/U-box 667 744 - -
Cla11g00152 750 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 34 2 744 - -
Cla11g00152 750 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 675 746 IPR013083 -
Cla11g00152 750 ProSiteProfiles Protein kinase domain profile. 393 656 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla11g00152 750 CDD RING-Ubox_WDSUB1_like 680 720 - -
Cla11g00152 750 ProSiteProfiles U-box domain profile. 675 748 IPR003613 GO:0004842|GO:0016567
Cla11g00152 750 SMART Ubox_2 679 741 IPR003613 GO:0004842|GO:0016567
Cla11g00152 750 PANTHER OS02G0152300 PROTEIN 2 744 - -
Cla11g00152 750 Coils Coil 319 365 - -
Cla11g00152 750 Pfam U-box domain 677 742 IPR003613 GO:0004842|GO:0016567
Cla11g00152 750 ProSitePatterns Serine/Threonine protein kinases active-site signature. 511 523 IPR008271 GO:0004672|GO:0006468
Cla11g00152 750 CDD STK_N 3 162 - -
Cla11g00152 750 Gene3D Transferase(Phosphotransferase) domain 1 466 673 - -
Cla11g00152 750 Pfam Protein kinase domain 394 649 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla11g00152 750 Pfam Universal stress protein family 18 151 IPR006016 -
Cla11g00152 750 SUPERFAMILY Protein kinase-like (PK-like) 376 649 IPR011009 -
Cla11g00152 750 SMART serkin_6 393 656 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla11g00152 750 Coils Coil 280 300 - -
Cla11g00152 750 ProSitePatterns Protein kinases ATP-binding region signature. 399 420 IPR017441 GO:0005524
Cla11g00152 750 Gene3D Phosphorylase Kinase; domain 1 372 465 - -
Cla11g00152 750 Gene3D HUPs 2 160 IPR014729 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00450 Cla-Chr1:4878826 Cla11g00152 Cla-Chr11:1806239 2.18E-09 dispersed
Cla01g00454 Cla-Chr1:4918871 Cla11g00152 Cla-Chr11:1806239 5.12E-144 dispersed
Cla05g00164 Cla-Chr5:1511538 Cla11g00152 Cla-Chr11:1806239 4.65E-107 dispersed
Cla06g00344 Cla-Chr6:4371393 Cla11g00152 Cla-Chr11:1806239 7.02E-74 dispersed
Cla06g01694 Cla-Chr6:30548137 Cla11g00152 Cla-Chr11:1806239 1.12E-07 dispersed
Cla11g00152 Cla-Chr11:1806239 Cla11g01104 Cla-Chr11:22448886 1.02E-10 dispersed
Cla11g00152 Cla-Chr11:1806239 Cla09g00073 Cla-Chr9:688045 6.65E-134 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80911 PF00069 Pkinase 1.90E-40 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla11g00152 - - cpep:111805862 1207.2