Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla11g00173 ATGATCGTCGGCGAGCAGCCCAAACGCCCCAATCCGACGGTTCAGGTTCCACCGTGGACGTTTATGGAGGATTCGGTGATGGATGTGTACAGTCATTCGCCGGGGAGCGGTGGCAGCAGTGGTTCCGTTAAGTGTGACGGATGTTCCAGCGGAGGCGGATACTCTCCTTATTATCTGCAGGAAGCGTTGGCGATGCTGAAGCGGTATCTTCCGTCTAATGAGGCGGAGATGGACTCGGATTTTGATGTTTCAAGTCGGGAGTTGGATTCTCCGGTGGATGCATACTCTTCCGATCAGTTTCGAATGTATGAGTTCAAGATTAAGAAGTGTACGAGAGGACGATCGCACGACTGGACTGAGTGTCCGTTTGCTCATCCCGGCGAGAAGGCTCGCCGGAGAGACCCGAGGAGGTATTACTATTCAGGTACGGCATGTGCGGATTTTCGGAAAGGGAGCTGTATGAAAGGAGATGCGTGTGAGTTTGCTCATGGAGTTTTCGAGTGCTGGCTTCATCCGGCTCGCTATCGGACTCAGCCATGCAAGGATGGGACGAGTTGTCGGAGAAGAGTTTGTTTCTTCGCTCATACGCCGGAGCAACTTAGGGTTTTGCCTCAACAAAGCCCTCGGAGTACGAGTTCCATCCCTTCGTACGATGGATCGCCTCTCCGGCAAGCAATCGAGGCCTGTGCAAAGCAAATGCCCTATTTATCTTCTCCAGGAACATCGCCGCCAGTATCTCCTCGAATCGAGTCTCCACCTCAATCGCCGATGATTAAGTCACTAAATCGACCTCACGCAACAAGTTCGATCAACGAAATGGTTGCATCACTGCGAAGTTTACAGCTCAATAAGGAACTCTGCAAGGTACAATCTCCTTCTTCCTCGTGGAATGTTCAAGTCGGATCTCCTGTATTCGGATCTCCTGTATTCGGATCTCCAAAGGAATCCACCGCTAGATCCGGTTTATGTAGCCTTCCAGAAACTCCGACTCGTCCAGTTACCCGTTATCTCGATTTCTGGGACCTAGGCTGCGGAGAGGAACCGGCGATGGAGCGAGTGGAGTCCGGAAGAGATCTTCGTGCAAAAATGTTTGAAAAATTGAGGAAGGAGAACTCCGTCGGGTGCGGCGATCAAGACAAATACAGCGGCGGCGGAGGTCTGGATGTCGGTTGGATCTCGGAGCTTCTCAAGTAA 1194 51.93 MIVGEQPKRPNPTVQVPPWTFMEDSVMDVYSHSPGSGGSSGSVKCDGCSSGGGYSPYYLQEALAMLKRYLPSNEAEMDSDFDVSSRELDSPVDAYSSDQFRMYEFKIKKCTRGRSHDWTECPFAHPGEKARRRDPRRYYYSGTACADFRKGSCMKGDACEFAHGVFECWLHPARYRTQPCKDGTSCRRRVCFFAHTPEQLRVLPQQSPRSTSSIPSYDGSPLRQAIEACAKQMPYLSSPGTSPPVSPRIESPPQSPMIKSLNRPHATSSINEMVASLRSLQLNKELCKVQSPSSSWNVQVGSPVFGSPVFGSPKESTARSGLCSLPETPTRPVTRYLDFWDLGCGEEPAMERVESGRDLRAKMFEKLRKENSVGCGDQDKYSGGGGLDVGWISELLK 397
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2031284 2032477 - ClCG11G001920.1 Cla11g00173 283995
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla11g00173 397 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 20 8 396 - -
Cla11g00173 397 Gene3D - 103 165 - -
Cla11g00173 397 ProSiteProfiles Zinc finger C3H1-type profile. 139 166 IPR000571 GO:0046872
Cla11g00173 397 PANTHER UNKEMPT FAMILY MEMBER 8 396 IPR045234 -
Cla11g00173 397 SMART c3hfinal6 139 165 IPR000571 GO:0046872
Cla11g00173 397 SMART c3hfinal6 174 197 IPR000571 GO:0046872
Cla11g00173 397 SUPERFAMILY CCCH zinc finger 138 168 IPR036855 GO:0046872
Cla11g00173 397 MobiDBLite consensus disorder prediction 237 256 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g01812 Cla-Chr5:30072712 Cla11g00173 Cla-Chr11:2031284 2.18E-102 dispersed
Cla08g01651 Cla-Chr8:29168801 Cla11g00173 Cla-Chr11:2031284 1.31E-72 dispersed
Cla10g01629 Cla-Chr10:31945774 Cla11g00173 Cla-Chr11:2031284 2.13E-48 dispersed
Cla11g00173 Cla-Chr11:2031284 Cla03g01526 Cla-Chr3:30903917 9.22E-160 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61991 None None None None Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla11g00173 - - csv:101221692 703.36