Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla11g00173 | ATGATCGTCGGCGAGCAGCCCAAACGCCCCAATCCGACGGTTCAGGTTCCACCGTGGACGTTTATGGAGGATTCGGTGATGGATGTGTACAGTCATTCGCCGGGGAGCGGTGGCAGCAGTGGTTCCGTTAAGTGTGACGGATGTTCCAGCGGAGGCGGATACTCTCCTTATTATCTGCAGGAAGCGTTGGCGATGCTGAAGCGGTATCTTCCGTCTAATGAGGCGGAGATGGACTCGGATTTTGATGTTTCAAGTCGGGAGTTGGATTCTCCGGTGGATGCATACTCTTCCGATCAGTTTCGAATGTATGAGTTCAAGATTAAGAAGTGTACGAGAGGACGATCGCACGACTGGACTGAGTGTCCGTTTGCTCATCCCGGCGAGAAGGCTCGCCGGAGAGACCCGAGGAGGTATTACTATTCAGGTACGGCATGTGCGGATTTTCGGAAAGGGAGCTGTATGAAAGGAGATGCGTGTGAGTTTGCTCATGGAGTTTTCGAGTGCTGGCTTCATCCGGCTCGCTATCGGACTCAGCCATGCAAGGATGGGACGAGTTGTCGGAGAAGAGTTTGTTTCTTCGCTCATACGCCGGAGCAACTTAGGGTTTTGCCTCAACAAAGCCCTCGGAGTACGAGTTCCATCCCTTCGTACGATGGATCGCCTCTCCGGCAAGCAATCGAGGCCTGTGCAAAGCAAATGCCCTATTTATCTTCTCCAGGAACATCGCCGCCAGTATCTCCTCGAATCGAGTCTCCACCTCAATCGCCGATGATTAAGTCACTAAATCGACCTCACGCAACAAGTTCGATCAACGAAATGGTTGCATCACTGCGAAGTTTACAGCTCAATAAGGAACTCTGCAAGGTACAATCTCCTTCTTCCTCGTGGAATGTTCAAGTCGGATCTCCTGTATTCGGATCTCCTGTATTCGGATCTCCAAAGGAATCCACCGCTAGATCCGGTTTATGTAGCCTTCCAGAAACTCCGACTCGTCCAGTTACCCGTTATCTCGATTTCTGGGACCTAGGCTGCGGAGAGGAACCGGCGATGGAGCGAGTGGAGTCCGGAAGAGATCTTCGTGCAAAAATGTTTGAAAAATTGAGGAAGGAGAACTCCGTCGGGTGCGGCGATCAAGACAAATACAGCGGCGGCGGAGGTCTGGATGTCGGTTGGATCTCGGAGCTTCTCAAGTAA | 1194 | 51.93 | MIVGEQPKRPNPTVQVPPWTFMEDSVMDVYSHSPGSGGSSGSVKCDGCSSGGGYSPYYLQEALAMLKRYLPSNEAEMDSDFDVSSRELDSPVDAYSSDQFRMYEFKIKKCTRGRSHDWTECPFAHPGEKARRRDPRRYYYSGTACADFRKGSCMKGDACEFAHGVFECWLHPARYRTQPCKDGTSCRRRVCFFAHTPEQLRVLPQQSPRSTSSIPSYDGSPLRQAIEACAKQMPYLSSPGTSPPVSPRIESPPQSPMIKSLNRPHATSSINEMVASLRSLQLNKELCKVQSPSSSWNVQVGSPVFGSPVFGSPKESTARSGLCSLPETPTRPVTRYLDFWDLGCGEEPAMERVESGRDLRAKMFEKLRKENSVGCGDQDKYSGGGGLDVGWISELLK | 397 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 2031284 | 2032477 | - | ClCG11G001920.1 | Cla11g00173 | 283995 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla11g00173 | 397 | PANTHER | ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 20 | 8 | 396 | - | - | |
Cla11g00173 | 397 | Gene3D | - | 103 | 165 | - | - | |
Cla11g00173 | 397 | ProSiteProfiles | Zinc finger C3H1-type profile. | 139 | 166 | IPR000571 | GO:0046872 | |
Cla11g00173 | 397 | PANTHER | UNKEMPT FAMILY MEMBER | 8 | 396 | IPR045234 | - | |
Cla11g00173 | 397 | SMART | c3hfinal6 | 139 | 165 | IPR000571 | GO:0046872 | |
Cla11g00173 | 397 | SMART | c3hfinal6 | 174 | 197 | IPR000571 | GO:0046872 | |
Cla11g00173 | 397 | SUPERFAMILY | CCCH zinc finger | 138 | 168 | IPR036855 | GO:0046872 | |
Cla11g00173 | 397 | MobiDBLite | consensus disorder prediction | 237 | 256 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla05g01812 | Cla-Chr5:30072712 | Cla11g00173 | Cla-Chr11:2031284 | 2.18E-102 | dispersed | |
Cla08g01651 | Cla-Chr8:29168801 | Cla11g00173 | Cla-Chr11:2031284 | 1.31E-72 | dispersed | |
Cla10g01629 | Cla-Chr10:31945774 | Cla11g00173 | Cla-Chr11:2031284 | 2.13E-48 | dispersed | |
Cla11g00173 | Cla-Chr11:2031284 | Cla03g01526 | Cla-Chr3:30903917 | 9.22E-160 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
61991 | None | None | None | None | Cla | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla11g00173 | - | - | csv:101221692 | 703.36 |