Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla11g00178 ATGAAGATCATCGAATTGGAAGATGCTGGAAATGATCGGGAAAATGAAATCGGTAGTGGTCAGATTGTGAAGGTCGATGCCAAAAGAGCGTTGGTTGGGGCTGGGGCTCGAATCCTGTTTTACCCTACCCTTTTGTATAACGTGCTTCGGAACAAAATGGAAGCTGAATTCAGGTGGTGGGATGAAGTTGATCAGTTTCTTTTGCTGGGTGCAGTGCCCTTCCCCAAAGACGTCCCAAGATTGAAGAAGCTTGGTGTTGGCGGTGTTATCACTCTCAATGAACCTTATGAAACACTAGTTCCATCGTCTTTGTATTTTGTGAGTCATCGCCATGGAATCGACCACTTAAAGATCCCAACGAGAGATTATTGTTTTGCTCCTAAATTTTCTGATATTAGCCGAGCTGTGGACTTCATTCACAGAAATGCATCATCTGGTAAAACAACATATGTCCATTGTAAAGCAGGACGAGGAAGGAGCACGACCATTGTGCTTTGCTATTTGGTCAAATATAAGCACATGACCCCATCTGCTGCACTGGAATATGTCCGCTCTAGAAGGCCACGTGTGTTACTTGCCCCCTCACAGTGGGAGGCTGTTCAAGAATACAGCAACCGTGGACCGGTCACAAGTTCTAGTTCACCCTCAGGAGGAGATGCAGTCCTCATTACAAAAGACGATCTAGAAGGATATCATGGTACATGCATTGACAGTGCGGGTAGAGAACTTGCAGTAGTCCCTCGGATGAGCAAGTCAAAGCCGATGATAGCAAGGTTGTCCTGCCTCTTTTCCTCTTTGATAATTCATGGCAGTACTGGATCTCTCATTAAGCGTCTGCCAGCACCGGAGGCTCGTGCTTGTTGA 864 46.18 MKIIELEDAGNDRENEIGSGQIVKVDAKRALVGAGARILFYPTLLYNVLRNKMEAEFRWWDEVDQFLLLGAVPFPKDVPRLKKLGVGGVITLNEPYETLVPSSLYFVSHRHGIDHLKIPTRDYCFAPKFSDISRAVDFIHRNASSGKTTYVHCKAGRGRSTTIVLCYLVKYKHMTPSAALEYVRSRRPRVLLAPSQWEAVQEYSNRGPVTSSSSPSGGDAVLITKDDLEGYHGTCIDSAGRELAVVPRMSKSKPMIARLSCLFSSLIIHGSTGSLIKRLPAPEARAC 287
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2123554 2126566 - ClCG11G001980.1 Cla11g00178 284000

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla11g00178 287 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 130 198 IPR000387 GO:0016311|GO:0016791
Cla11g00178 287 Gene3D Protein tyrosine phosphatase superfamily 59 207 IPR029021 -
Cla11g00178 287 Pfam Dual specificity phosphatase, catalytic domain 106 205 IPR000340 GO:0008138|GO:0016311
Cla11g00178 287 PANTHER - 1 287 - -
Cla11g00178 287 SMART dsp_5 62 206 IPR020422 GO:0006470|GO:0008138
Cla11g00178 287 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 52 204 IPR029021 -
Cla11g00178 287 ProSiteProfiles Dual specificity protein phosphatase domain profile. 59 209 IPR020422 GO:0006470|GO:0008138
Cla11g00178 287 PANTHER OS01G0739200 PROTEIN 1 287 - -
Cla11g00178 287 CDD PTPMT1 59 206 IPR044596 GO:0004721
Cla11g00178 287 ProSitePatterns Tyrosine specific protein phosphatases active site. 151 161 IPR016130 GO:0016311|GO:0016791
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla11g00178 - - - bhj:120080407 541.191
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla09g02029 Cla-Chr9:37875477 Cla11g00178 Cla-Chr11:2123554 6.75E-07 dispersed
Cla10g00234 Cla-Chr10:2766327 Cla11g00178 Cla-Chr11:2123554 1.17E-99 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi11g246 Blo01g00533 . Bda01g02034 . . Bpe02g02223 . . . . Cma05g01379 Cma12g01280 Car05g01293 Car12g01250 . . . . . . . . . . Cla11g00178 Cam11g0207 Cec11g0207 Cco11g0221 Clacu11g0342 Cmu11g0192 Cre11g0690 . . . . . Csa02g00073 Chy05g01416 . . . . . . . Bma01g00214 . Sed04g1684 Cmo05g01381 Cmo12g01314 . . . . Cpe11g01148 Cpe07g01040 Bhi06g01678 Tan08g0100 Cmetu05g1458 . Hepe08g2635 . . . . . . . . . Lsi11g00210 . . Cme05g02021
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla01g01668 . 76 649 Protein tyrosine phosphatase (PTP) family AT3G50110 62.2 3.5e-191 665.2
Cla02g00625 . 42 647 Protein tyrosine phosphatase (PTP) family AT3G50110 54.8 1.8e-174 609.8
Cla10g01471 . 1 407 Protein tyrosine phosphatase (PTP) family AT5G39400 65.9 1.7e-157 552.7
Cla08g00816 . 628 1416 Protein tyrosine phosphatase (PTP) family AT3G10550 63.6 8.0e-308 1053.1
Cla08g00816 . 628 1416 Protein tyrosine phosphatase (PTP) family AT5G04540 59.4 3.8e-286 981.1
Cla06g01227 . 1 1257 Protein tyrosine phosphatase (PTP) family AT5G58160 55.4 0.0e+00 1088.6
Cla09g00969 . 86 390 Protein tyrosine phosphatase (PTP) family AT1G71860 67.3 3.2e-122 435.3
Cla06g01782 . 188 1083 Protein tyrosine phosphatase (PTP) family AT5G23720 65.1 0.0e+00 1087.8
Cla09g02029 . 69 234 Protein tyrosine phosphatase (PTP) family AT2G04550 76.9 8.7e-71 263.5
Cla05g02189 . 107 419 Protein tyrosine phosphatase (PTP) family AT3G52180 53.7 2.1e-90 329.3
Cla07g00459 . 10 274 Protein tyrosine phosphatase (PTP) family AT3G10940 67.7 2.5e-104 375.6
Cla10g01351 . 143 558 Protein tyrosine phosphatase (PTP) family AT3G01510 68.6 5.8e-180 627.5
Cla02g01771 . 93 296 Protein tyrosine phosphatase (PTP) family AT2G32960 59.4 3.8e-75 278.5
Cla09g01043 . 25 233 Protein tyrosine phosphatase (PTP) family AT2G32960 63.9 2.1e-73 272.7
Cla10g00234 . 87 419 Protein tyrosine phosphatase (PTP) family AT2G35680 55.8 3.1e-101 365.5
Cla11g00178 . 17 266 Protein tyrosine phosphatase (PTP) family AT2G35680 54.7 4.3e-79 292.0
Cla10g00234 . 123 298 Protein tyrosine phosphatase (PTP) family AT5G56610 50.6 6.2e-43 171.0
Cla02g01771 . 127 296 Protein tyrosine phosphatase (PTP) family AT4G03960 78.2 6.3e-78 287.3
Cla09g01043 . 34 233 Protein tyrosine phosphatase (PTP) family AT4G03960 64.0 6.3e-70 260.8
Cla03g01026 . 13 186 Protein tyrosine phosphatase (PTP) family AT4G03960 56.9 2.0e-55 212.6
Cla03g01026 . 7 212 Protein tyrosine phosphatase (PTP) family AT3G02800 65.5 6.0e-76 280.8
Cla02g01771 . 118 290 Protein tyrosine phosphatase (PTP) family AT3G02800 60.7 4.8e-57 218.0
Cla07g00286 . 1 188 Protein tyrosine phosphatase (PTP) family AT3G55270 65.6 7.7e-63 239.2
Cla10g01471 . 1 407 Protein tyrosine phosphatase (PTP) family AT5G39400 65.9 1.7e-157 552.7
Cla02g00625 . 8 647 Protein tyrosine phosphatase (PTP) family AT3G19420 61.1 1.5e-215 746.1
Cla01g01668 . 74 649 Protein tyrosine phosphatase (PTP) family AT3G19420 60.8 6.9e-200 694.1
Cla01g01668 . 76 649 Protein tyrosine phosphatase (PTP) family AT3G50110 62.2 3.5e-191 665.2
Cla02g00625 . 42 647 Protein tyrosine phosphatase (PTP) family AT3G50110 54.8 1.8e-174 609.8
Cla06g01227 . 1 1257 Protein tyrosine phosphatase (PTP) family AT5G58160 55.4 0.0e+00 1088.6
Cla08g00816 . 628 1416 Protein tyrosine phosphatase (PTP) family AT3G10550 63.6 8.0e-308 1053.1
Cla08g00816 . 628 1416 Protein tyrosine phosphatase (PTP) family AT5G04540 59.4 3.8e-286 981.1
Cla02g02139 . 67 249 Protein tyrosine phosphatase (PTP) family AT3G44620 64.6 3.2e-69 258.8
Cla10g00175 . 50 300 Protein tyrosine phosphatase (PTP) family AT2G35320 62.9 2.9e-90 328.9
Cla04g00726 . 1 672 Protein tyrosine phosphatase (PTP) family AT3G09100 70.4 1.4e-286 982.2
Cla04g00726 . 5 672 Protein tyrosine phosphatase (PTP) family AT5G01290 65.6 2.0e-258 888.6
Cla04g00726 . 86 682 Protein tyrosine phosphatase (PTP) family AT5G28210 55.6 4.1e-184 641.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006019 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 4 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla11g00178 Cla_Chr11 FPKM 29.164673 35.218624 10.158663 9.408771 10.707647 9.067184 10.32528 25.038122 24.853802 26.121071