Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla11g00178 ATGAAGATCATCGAATTGGAAGATGCTGGAAATGATCGGGAAAATGAAATCGGTAGTGGTCAGATTGTGAAGGTCGATGCCAAAAGAGCGTTGGTTGGGGCTGGGGCTCGAATCCTGTTTTACCCTACCCTTTTGTATAACGTGCTTCGGAACAAAATGGAAGCTGAATTCAGGTGGTGGGATGAAGTTGATCAGTTTCTTTTGCTGGGTGCAGTGCCCTTCCCCAAAGACGTCCCAAGATTGAAGAAGCTTGGTGTTGGCGGTGTTATCACTCTCAATGAACCTTATGAAACACTAGTTCCATCGTCTTTGTATTTTGTGAGTCATCGCCATGGAATCGACCACTTAAAGATCCCAACGAGAGATTATTGTTTTGCTCCTAAATTTTCTGATATTAGCCGAGCTGTGGACTTCATTCACAGAAATGCATCATCTGGTAAAACAACATATGTCCATTGTAAAGCAGGACGAGGAAGGAGCACGACCATTGTGCTTTGCTATTTGGTCAAATATAAGCACATGACCCCATCTGCTGCACTGGAATATGTCCGCTCTAGAAGGCCACGTGTGTTACTTGCCCCCTCACAGTGGGAGGCTGTTCAAGAATACAGCAACCGTGGACCGGTCACAAGTTCTAGTTCACCCTCAGGAGGAGATGCAGTCCTCATTACAAAAGACGATCTAGAAGGATATCATGGTACATGCATTGACAGTGCGGGTAGAGAACTTGCAGTAGTCCCTCGGATGAGCAAGTCAAAGCCGATGATAGCAAGGTTGTCCTGCCTCTTTTCCTCTTTGATAATTCATGGCAGTACTGGATCTCTCATTAAGCGTCTGCCAGCACCGGAGGCTCGTGCTTGTTGA 864 46.18 MKIIELEDAGNDRENEIGSGQIVKVDAKRALVGAGARILFYPTLLYNVLRNKMEAEFRWWDEVDQFLLLGAVPFPKDVPRLKKLGVGGVITLNEPYETLVPSSLYFVSHRHGIDHLKIPTRDYCFAPKFSDISRAVDFIHRNASSGKTTYVHCKAGRGRSTTIVLCYLVKYKHMTPSAALEYVRSRRPRVLLAPSQWEAVQEYSNRGPVTSSSSPSGGDAVLITKDDLEGYHGTCIDSAGRELAVVPRMSKSKPMIARLSCLFSSLIIHGSTGSLIKRLPAPEARAC 287
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2123554 2126566 - ClCG11G001980.1 Cla11g00178 284000
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla11g00178 287 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 130 198 IPR000387 GO:0016311|GO:0016791
Cla11g00178 287 Gene3D Protein tyrosine phosphatase superfamily 59 207 IPR029021 -
Cla11g00178 287 Pfam Dual specificity phosphatase, catalytic domain 106 205 IPR000340 GO:0008138|GO:0016311
Cla11g00178 287 PANTHER - 1 287 - -
Cla11g00178 287 SMART dsp_5 62 206 IPR020422 GO:0006470|GO:0008138
Cla11g00178 287 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 52 204 IPR029021 -
Cla11g00178 287 ProSiteProfiles Dual specificity protein phosphatase domain profile. 59 209 IPR020422 GO:0006470|GO:0008138
Cla11g00178 287 PANTHER OS01G0739200 PROTEIN 1 287 - -
Cla11g00178 287 CDD PTPMT1 59 206 IPR044596 GO:0004721
Cla11g00178 287 ProSitePatterns Tyrosine specific protein phosphatases active site. 151 161 IPR016130 GO:0016311|GO:0016791
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla09g02029 Cla-Chr9:37875477 Cla11g00178 Cla-Chr11:2123554 6.75E-07 dispersed
Cla10g00234 Cla-Chr10:2766327 Cla11g00178 Cla-Chr11:2123554 1.17E-99 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla11g00178 - - bhj:120080407 541.191