Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla11g00182 ATGTCGTGGCAAACGTACGTCGATGATCATTTGATGTGCGACATTGATGGCCAAGGCCAGCACCTCACCGCCGCTGCCATTATCGGCCACGATGGCAGCGTCTGGGCTCAGAGCTCCTCATTTCCTCAGTTCAAGCCTGAGGAGATCACTGGTATCATGAAGGATTTTGATGAACCAGGTCATCTTGCACCTACTGGATTACACCTTGGAGGTACAAAGTATATGGTAATCCAAGGAGAGCCTGGAGCTGTCATCCGTGGAAAGAAGGGATCTGGAGGAATTACCATAAAGAAGACTGGTCAAGCTCTAGTCTTTGGAATTTATGAAGAACCTGTTACTCCAGGACAGTGCAACATGGTCGTTGAGAGGCTGGGTGATTACCTTGTCGATCAGGGTCTGAGGAAGAAGAAGAAGAAGAAGCAGCCGGGAAAGATGTCGTGGCAAGTTTACGTCGATGATCATTTGATGTGCGAAATTGAGGGCAATCACCTCACATCTGCGGCCATTATCGGCCAAGACGGCAGTGTTTGGGCTAAAAGCGAAAATTTCCCTCAGGTCGATGCATTACTTCGGGAATCCGGACTCAAGCCTGAAGAAATTACTGGCATCTTGAATGACTTCAATGAACCCGGGACGCTTGCTCCGACTGGTTTGTACATTGGTGGTTCAAAATATATGGTAATCCAAGGGGAGCCTGGAGCTGTTATTCGTGGGAAGAAGGGCCCAGGTGGGGTTACTGTTAAGAAGACTGCTCTGGCTTTAGTCATTGGCATCTATGATGAACCAATGACTCCTGGTCAGTGCAATATGATTGTTGAAAGGCTTGGGGATTATCTCGTCGAACAGGGCCTCTAA 855 48.42 MSWQTYVDDHLMCDIDGQGQHLTAAAIIGHDGSVWAQSSSFPQFKPEEITGIMKDFDEPGHLAPTGLHLGGTKYMVIQGEPGAVIRGKKGSGGITIKKTGQALVFGIYEEPVTPGQCNMVVERLGDYLVDQGLRKKKKKKQPGKMSWQVYVDDHLMCEIEGNHLTSAAIIGQDGSVWAKSENFPQVDALLRESGLKPEEITGILNDFNEPGTLAPTGLYIGGSKYMVIQGEPGAVIRGKKGPGGVTVKKTALALVIGIYDEPMTPGQCNMIVERLGDYLVEQGL 284
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2171837 2177432 + ClCG11G002020.2 Cla11g00182 284004
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla11g00182 284 ProSitePatterns Profilin signature. 1 8 IPR027310 GO:0003779
Cla11g00182 284 PANTHER PROFILIN 145 284 IPR005455 GO:0003779
Cla11g00182 284 PANTHER PROFILIN 1 133 IPR005455 GO:0003779
Cla11g00182 284 PRINTS Plant profilin signature 1 14 IPR005455 GO:0003779
Cla11g00182 284 PRINTS Plant profilin signature 54 68 IPR005455 GO:0003779
Cla11g00182 284 PRINTS Plant profilin signature 86 101 IPR005455 GO:0003779
Cla11g00182 284 PRINTS Plant profilin signature 29 42 IPR005455 GO:0003779
Cla11g00182 284 PRINTS Plant profilin signature 73 82 IPR005455 GO:0003779
Cla11g00182 284 PRINTS Plant profilin signature 106 119 IPR005455 GO:0003779
Cla11g00182 284 PRINTS Plant profilin signature 119 132 IPR005455 GO:0003779
Cla11g00182 284 CDD PROF 146 283 IPR005455 GO:0003779
Cla11g00182 284 SUPERFAMILY Profilin (actin-binding protein) 146 283 IPR036140 -
Cla11g00182 284 PANTHER PROFILIN 1 133 - -
Cla11g00182 284 PANTHER PROFILIN 145 284 - -
Cla11g00182 284 Gene3D Dynein light chain 2a, cytoplasmic 1 133 - -
Cla11g00182 284 Gene3D Dynein light chain 2a, cytoplasmic 143 284 - -
Cla11g00182 284 SMART prof_2 1 133 IPR005455 GO:0003779
Cla11g00182 284 SMART prof_2 145 284 IPR005455 GO:0003779
Cla11g00182 284 Pfam Profilin 1 132 IPR005455 GO:0003779
Cla11g00182 284 Pfam Profilin 145 283 IPR005455 GO:0003779
Cla11g00182 284 SUPERFAMILY Profilin (actin-binding protein) 2 132 IPR036140 -
Cla11g00182 284 PRINTS Profilin signature 3 12 IPR005455 GO:0003779
Cla11g00182 284 PRINTS Profilin signature 42 62 IPR005455 GO:0003779
Cla11g00182 284 PRINTS Profilin signature 66 80 IPR005455 GO:0003779
Cla11g00182 284 PRINTS Profilin signature 115 132 IPR005455 GO:0003779
Cla11g00182 284 PRINTS Profilin signature 23 32 IPR005455 GO:0003779
Cla11g00182 284 PRINTS Profilin signature 102 115 IPR005455 GO:0003779
Cla11g00182 284 CDD PROF 2 132 IPR005455 GO:0003779
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla09g00022 Cla-Chr9:276663 Cla11g00182 Cla-Chr11:2171837 2.58E-73 dispersed
Cla11g00182 Cla-Chr11:2171837 Cla11g01470 Cla-Chr11:28339638 8.49E-59 dispersed
Cla11g00182 Cla-Chr11:2171837 Cla07g01272 Cla-Chr7:29844969 5.27E-64 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla11g00182 K05759 - twl:120006331 263.462