Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla11g00183 ATGAAGACCAAGACGCCATTGAAGCAGCTCAAGCTCTCTGTTCCTGTTCAAGAAACTTCCATCCGTTCTTTCCTGACTGCGAGTGGAACATTTCACGACGGCAATCTACTACTGAACCAGAAAGGATTACGGCTTGTATCTGAAGAGAAAGAAGCGCAGACTTCAGATTGTAAGGAGCTTGATGTTGATTTCTCATTGGAAGATCTTGAGACTGTGAAAGTTATTGGAAAAGGAAGTGGAGGTGTAGTACAACTTGTTCGACACAAGTGGGTTGGAAAACTTTTTGCCTTAAAGATCTGTGAAAGAAAACAATTGAGTTTTGATAATGAAGTGGTAAAAGCTAGATCTGGCAGTTCCTCAGTGGTGACTGGTGAGAGTAATACGGTAATCCAGATGAACATACAAGAGGATATCCGTAAACAGATAGTACAGGAACTGAAAATTAATCAAGCAGCACAATGTCCACATATTGTGGTCTGCTATCATTCTTTCTACCACAATGGTGCCATTTCTCTTGTGCTAGAATACATGGATCGCGGTTCTCTAGCCGATGTAGTCAGACAAATCAAAACAATTCTTGAACCATATCTTGCAGTTGTTTGTAAACAGGTTTTACAAGGTCTTGTTTACTTGCATCATGAGAGGCATGTTATACACAGAGACATCAAGCCATCCAATCTACTTGTTAACCATAAAGGTGAGGTCAAAATCACTGATTTTGGAGTAAGTGCGATGCTAGCAAGTTCTATGGGTCAAAGAGATACATTTGTAGGGACGTACAATTACATGTCGCCTGAACGAATTAGTGGGGGAACATATGACTACAGCAGTGATATATGGAGTTTGGGCTTGGTAGTACTTGAATGTGCCATCGGAAGGTTTCCTTATTTGCAGTCTGAAGAGCAGCAAAGTTGGCCAAGCTTTTATGAACTCCTAGAGGCAATTGTAGCAAAGCCACCGCCTTCTGCCCCACCGGATCAATTTTCCCCCGACATTAAGAAGGATCCTAAAGAAAGATCGTCATCATTAGATCTTCTGAATCATCCTTTCATCCAGAAATTCGAAGATAAAGACATTGATGTCGGGATTCTCGTAGGCAGCTTGGATCCTCCGGTAAGTTTTCCCAGATAA 1131 41.56 MKTKTPLKQLKLSVPVQETSIRSFLTASGTFHDGNLLLNQKGLRLVSEEKEAQTSDCKELDVDFSLEDLETVKVIGKGSGGVVQLVRHKWVGKLFALKICERKQLSFDNEVVKARSGSSSVVTGESNTVIQMNIQEDIRKQIVQELKINQAAQCPHIVVCYHSFYHNGAISLVLEYMDRGSLADVVRQIKTILEPYLAVVCKQVLQGLVYLHHERHVIHRDIKPSNLLVNHKGEVKITDFGVSAMLASSMGQRDTFVGTYNYMSPERISGGTYDYSSDIWSLGLVVLECAIGRFPYLQSEEQQSWPSFYELLEAIVAKPPPSAPPDQFSPDIKKDPKERSSSLDLLNHPFIQKFEDKDIDVGILVGSLDPPVSFPR 376
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2179226 2182818 + ClCG11G002030.2 Cla11g00183 284005

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla11g00183 376 MobiDBLite consensus disorder prediction 320 344 - -
Cla11g00183 376 Gene3D Phosphorylase Kinase; domain 1 38 178 - -
Cla11g00183 376 ProSitePatterns Protein kinases ATP-binding region signature. 75 98 IPR017441 GO:0005524
Cla11g00183 376 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE 6 1 101 - -
Cla11g00183 376 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE 6 129 375 - -
Cla11g00183 376 SUPERFAMILY Protein kinase-like (PK-like) 67 359 IPR011009 -
Cla11g00183 376 Gene3D Transferase(Phosphotransferase) domain 1 180 365 - -
Cla11g00183 376 ProSiteProfiles Protein kinase domain profile. 69 351 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla11g00183 376 Pfam Protein kinase domain 133 351 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla11g00183 376 ProSitePatterns Serine/Threonine protein kinases active-site signature. 217 229 IPR008271 GO:0004672|GO:0006468
Cla11g00183 376 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 1 101 - -
Cla11g00183 376 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 129 375 - -
Cla11g00183 376 CDD PKc_MAPKK_plant_like 67 355 - -
Cla11g00183 376 SMART serkin_6 69 351 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla11g00183 K04368 MAP2K1, MEK1; mitogen-activated protein kinase kinase 1 [EC:2.7.12.2] - csv:101218848 641.343
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla10g01325 Cla-Chr10:28198744 Cla11g00183 Cla-Chr11:2179226 8.52E-65 dispersed
Cla11g00151 Cla-Chr11:1802433 Cla11g00183 Cla-Chr11:2179226 4.74E-119 dispersed
Cla11g00183 Cla-Chr11:2179226 Cla05g00223 Cla-Chr5:1993434 8.30E-34 dispersed
Cla11g00183 Cla-Chr11:2179226 Cla03g01476 Cla-Chr3:30269699 1.56E-145 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi11g254 Blo01g00529 . Bda01g02038 . . Bpe02g02226 . . . . Cma05g01373 Cma12g01275 Car05g01287 Car12g01246 . . . . . . . . . . Cla11g00183 Cam11g0213 Cec11g0214 . . . . . . . . . Csa02g00082 Chy05g01408 . . . . . . . Bma01g00211 . Sed08g1406 Cmo05g01376 . . . . . Cpe11g01143 . Bhi06g01689 Tan08g0109 Cmetu04g3241 . . . . . . . . . . . Lsi11g00218 . . Cme05g02012
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla03g01476 CCT 28 375 MAP Kinase Kinase Gene Family AT4G26070 66.4 2.0e-132 469.2
Cla11g00151 CCT 27 307 MAP Kinase Kinase Gene Family AT4G26070 67.0 3.1e-109 392.1
Cla03g01476 CCT 1 348 MAP Kinase Kinase Gene Family AT4G29810 65.6 7.1e-130 460.7
Cla11g00151 CCT 1 308 MAP Kinase Kinase Gene Family AT4G29810 62.4 9.0e-109 390.6
Cla11g00183 . 10 346 MAP Kinase Kinase Gene Family AT4G29810 53.0 2.0e-100 362.8
Cla10g01325 . 86 568 MAP Kinase Kinase Gene Family AT5G40440 79.1 2.9e-228 788.1
Cla07g01350 . 1 367 MAP Kinase Kinase Gene Family AT1G51660 68.6 1.3e-134 476.5
Cla04g01028 . 1 224 MAP Kinase Kinase Gene Family AT1G51660 55.4 9.8e-69 257.7
Cla07g01350 . 1 367 MAP Kinase Kinase Gene Family AT3G21220 63.9 1.4e-128 456.4
Cla04g01028 . 1 217 MAP Kinase Kinase Gene Family AT3G21220 55.3 2.7e-68 256.1
Cla11g00183 . 1 376 MAP Kinase Kinase Gene Family AT5G56580 74.5 2.9e-158 555.1
Cla03g01476 CCT 7 374 MAP Kinase Kinase Gene Family AT5G56580 56.4 6.1e-116 414.5
Cla11g00151 CCT 1 308 MAP Kinase Kinase Gene Family AT5G56580 55.2 1.7e-94 343.2
Cla04g01028 . 1 219 MAP Kinase Kinase Gene Family AT1G18350 70.5 1.1e-86 317.0
Cla04g01028 . 1 203 MAP Kinase Kinase Gene Family AT3G06230 58.0 1.8e-65 246.5
Cla04g01028 . 1 215 MAP Kinase Kinase Gene Family AT1G73500 72.2 2.3e-90 329.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007196 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 2 1 2 1 1 37
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80913 PF00069 Pkinase 7.80E-51 CL0016 Cla PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla11g00183 Cla_Chr11 FPKM 10.333475 14.361469 19.354628 19.79936 15.930863 15.742565 15.640273 26.215454 26.108084 29.467142