Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla11g00204 | ATGGCCGACGCCACCGTGCCGGAGACCGACTCCGGTGGCAGCTCCAATTCCTGGTCCTCGTCTTCTTCCTCGACGTCATGTTCGATCTCGTCTCCGTCGAAACAAGTCGGTAGCCGAACGTCGTCGAAGCGCAGTCGAGAGAGTAGCAACAATCGTCACCCAAGTTACCGAGGCGTCCGAATGAGGGCGTGGGGCAAATGGGTGTCGGAAATTCGAGAGCCGAAGAAGAAGAGTCGGATCTGGCTCGGCACCTTCGCCACACCCGACATGGCGGCACGTGCTCACGACGTAGCCGCCCTTACTATCAAAGGCAATTCAGCCATCCTCAATTTCCCTGAACTCGCCGCCTCATTACCCCGCCCCGCCTCCTCGTCCCCTCGGGACGTTCAATCCGCCGCCGCCCTCGCCGCTTCAATGCAACTTCCTGACGTCGTCTCACCTCCTCCACCACCGCCACCCCCACCCTCATCGCCTCCCTTCTCGTCATCGTCCGAGTTGGACGAGTCGACACCGGAGGAATTGAGTGAAATTGTGGTGCTGCCCAGTTTGGGAACGGGGTACGAGGAATCGGCCGAGTCAGTGACCGAGTTTGTGTTTGACGAGTGGCAATGTAGCTATGAGCCGTGGGATCAACAAAATCAAAGCTCAAAAGAAGAAGAAGAAGAAGCTTATGAGTACTTTATAGATCAAATGGCAATGGCGGAAAAAGAGTGTGTGATTCCCACTGCATTATTTCAACCTTTACCTTTCTCGTGGTAA | 759 | 55.73 | MADATVPETDSGGSSNSWSSSSSSTSCSISSPSKQVGSRTSSKRSRESSNNRHPSYRGVRMRAWGKWVSEIREPKKKSRIWLGTFATPDMAARAHDVAALTIKGNSAILNFPELAASLPRPASSSPRDVQSAAALAASMQLPDVVSPPPPPPPPPSSPPFSSSSELDESTPEELSEIVVLPSLGTGYEESAESVTEFVFDEWQCSYEPWDQQNQSSKEEEEEAYEYFIDQMAMAEKECVIPTALFQPLPFSW | 252 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 2372697 | 2373455 | - | ClCG11G002260.1 | Cla11g00204 | 284026 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla11g00204 | 252 | PRINTS | Ethylene responsive element binding protein signature | 56 | 67 | IPR001471 | GO:0003700|GO:0006355 | |
Cla11g00204 | 252 | PRINTS | Ethylene responsive element binding protein signature | 78 | 94 | IPR001471 | GO:0003700|GO:0006355 | |
Cla11g00204 | 252 | Pfam | AP2 domain | 54 | 104 | IPR001471 | GO:0003700|GO:0006355 | |
Cla11g00204 | 252 | MobiDBLite | consensus disorder prediction | 141 | 175 | - | - | |
Cla11g00204 | 252 | ProSiteProfiles | AP2/ERF domain profile. | 55 | 112 | IPR001471 | GO:0003700|GO:0006355 | |
Cla11g00204 | 252 | PANTHER | DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 3-LIKE | 15 | 235 | - | - | |
Cla11g00204 | 252 | MobiDBLite | consensus disorder prediction | 8 | 44 | - | - | |
Cla11g00204 | 252 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED | 15 | 235 | - | - | |
Cla11g00204 | 252 | SUPERFAMILY | DNA-binding domain | 55 | 113 | IPR016177 | GO:0003677 | |
Cla11g00204 | 252 | MobiDBLite | consensus disorder prediction | 143 | 160 | - | - | |
Cla11g00204 | 252 | SMART | rav1_2 | 55 | 118 | IPR001471 | GO:0003700|GO:0006355 | |
Cla11g00204 | 252 | MobiDBLite | consensus disorder prediction | 1 | 59 | - | - | |
Cla11g00204 | 252 | Gene3D | AP2/ERF domain | 55 | 113 | IPR036955 | GO:0003700|GO:0006355 | |
Cla11g00204 | 252 | Coils | Coil | 217 | 237 | - | - | |
Cla11g00204 | 252 | CDD | AP2 | 54 | 114 | IPR001471 | GO:0003700|GO:0006355 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla01g01659 | Cla-Chr1:31472560 | Cla11g00204 | Cla-Chr11:2372697 | 1.09E-24 | dispersed | |
Cla08g00102 | Cla-Chr8:2133136 | Cla11g00204 | Cla-Chr11:2372697 | 2.32E-35 | dispersed | |
Cla08g01223 | Cla-Chr8:25148826 | Cla11g00204 | Cla-Chr11:2372697 | 6.29E-54 | dispersed | |
Cla08g01586 | Cla-Chr8:28555426 | Cla11g00204 | Cla-Chr11:2372697 | 1.52E-25 | dispersed | |
Cla10g01830 | Cla-Chr10:34267959 | Cla11g00204 | Cla-Chr11:2372697 | 8.92E-34 | dispersed | |
Cla11g00204 | Cla-Chr11:2372697 | Cla11g01484 | Cla-Chr11:28476465 | 4.40E-53 | dispersed | |
Cla05g00038 | Cla-Chr5:503229 | Cla11g00204 | Cla-Chr11:2372697 | 6.81E-42 | transposed | |
Cla06g00231 | Cla-Chr6:2817759 | Cla11g00204 | Cla-Chr11:2372697 | 3.95E-40 | transposed | |
Cla08g00183 | Cla-Chr8:3779739 | Cla11g00204 | Cla-Chr11:2372697 | 3.08E-30 | transposed | |
Cla10g00239 | Cla-Chr10:2869126 | Cla11g00204 | Cla-Chr11:2372697 | 1.56E-48 | transposed | |
Cla11g00204 | Cla-Chr11:2372697 | Cla06g00895 | Cla-Chr6:13807124 | 3.98E-65 | wgd | |
Cla11g00204 | Cla-Chr11:2372697 | Cla07g01261 | Cla-Chr7:29684996 | 7.38E-46 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
61993 | PF00847 | AP2 | 7.40E-13 | CL0081 | Cla | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla11g00204 | K09286 | - | csv:101212945 | 337.035 |