Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla11g00204 ATGGCCGACGCCACCGTGCCGGAGACCGACTCCGGTGGCAGCTCCAATTCCTGGTCCTCGTCTTCTTCCTCGACGTCATGTTCGATCTCGTCTCCGTCGAAACAAGTCGGTAGCCGAACGTCGTCGAAGCGCAGTCGAGAGAGTAGCAACAATCGTCACCCAAGTTACCGAGGCGTCCGAATGAGGGCGTGGGGCAAATGGGTGTCGGAAATTCGAGAGCCGAAGAAGAAGAGTCGGATCTGGCTCGGCACCTTCGCCACACCCGACATGGCGGCACGTGCTCACGACGTAGCCGCCCTTACTATCAAAGGCAATTCAGCCATCCTCAATTTCCCTGAACTCGCCGCCTCATTACCCCGCCCCGCCTCCTCGTCCCCTCGGGACGTTCAATCCGCCGCCGCCCTCGCCGCTTCAATGCAACTTCCTGACGTCGTCTCACCTCCTCCACCACCGCCACCCCCACCCTCATCGCCTCCCTTCTCGTCATCGTCCGAGTTGGACGAGTCGACACCGGAGGAATTGAGTGAAATTGTGGTGCTGCCCAGTTTGGGAACGGGGTACGAGGAATCGGCCGAGTCAGTGACCGAGTTTGTGTTTGACGAGTGGCAATGTAGCTATGAGCCGTGGGATCAACAAAATCAAAGCTCAAAAGAAGAAGAAGAAGAAGCTTATGAGTACTTTATAGATCAAATGGCAATGGCGGAAAAAGAGTGTGTGATTCCCACTGCATTATTTCAACCTTTACCTTTCTCGTGGTAA 759 55.73 MADATVPETDSGGSSNSWSSSSSSTSCSISSPSKQVGSRTSSKRSRESSNNRHPSYRGVRMRAWGKWVSEIREPKKKSRIWLGTFATPDMAARAHDVAALTIKGNSAILNFPELAASLPRPASSSPRDVQSAAALAASMQLPDVVSPPPPPPPPPSSPPFSSSSELDESTPEELSEIVVLPSLGTGYEESAESVTEFVFDEWQCSYEPWDQQNQSSKEEEEEAYEYFIDQMAMAEKECVIPTALFQPLPFSW 252
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2372697 2373455 - ClCG11G002260.1 Cla11g00204 284026
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla11g00204 252 PRINTS Ethylene responsive element binding protein signature 56 67 IPR001471 GO:0003700|GO:0006355
Cla11g00204 252 PRINTS Ethylene responsive element binding protein signature 78 94 IPR001471 GO:0003700|GO:0006355
Cla11g00204 252 Pfam AP2 domain 54 104 IPR001471 GO:0003700|GO:0006355
Cla11g00204 252 MobiDBLite consensus disorder prediction 141 175 - -
Cla11g00204 252 ProSiteProfiles AP2/ERF domain profile. 55 112 IPR001471 GO:0003700|GO:0006355
Cla11g00204 252 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 3-LIKE 15 235 - -
Cla11g00204 252 MobiDBLite consensus disorder prediction 8 44 - -
Cla11g00204 252 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 15 235 - -
Cla11g00204 252 SUPERFAMILY DNA-binding domain 55 113 IPR016177 GO:0003677
Cla11g00204 252 MobiDBLite consensus disorder prediction 143 160 - -
Cla11g00204 252 SMART rav1_2 55 118 IPR001471 GO:0003700|GO:0006355
Cla11g00204 252 MobiDBLite consensus disorder prediction 1 59 - -
Cla11g00204 252 Gene3D AP2/ERF domain 55 113 IPR036955 GO:0003700|GO:0006355
Cla11g00204 252 Coils Coil 217 237 - -
Cla11g00204 252 CDD AP2 54 114 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01659 Cla-Chr1:31472560 Cla11g00204 Cla-Chr11:2372697 1.09E-24 dispersed
Cla08g00102 Cla-Chr8:2133136 Cla11g00204 Cla-Chr11:2372697 2.32E-35 dispersed
Cla08g01223 Cla-Chr8:25148826 Cla11g00204 Cla-Chr11:2372697 6.29E-54 dispersed
Cla08g01586 Cla-Chr8:28555426 Cla11g00204 Cla-Chr11:2372697 1.52E-25 dispersed
Cla10g01830 Cla-Chr10:34267959 Cla11g00204 Cla-Chr11:2372697 8.92E-34 dispersed
Cla11g00204 Cla-Chr11:2372697 Cla11g01484 Cla-Chr11:28476465 4.40E-53 dispersed
Cla05g00038 Cla-Chr5:503229 Cla11g00204 Cla-Chr11:2372697 6.81E-42 transposed
Cla06g00231 Cla-Chr6:2817759 Cla11g00204 Cla-Chr11:2372697 3.95E-40 transposed
Cla08g00183 Cla-Chr8:3779739 Cla11g00204 Cla-Chr11:2372697 3.08E-30 transposed
Cla10g00239 Cla-Chr10:2869126 Cla11g00204 Cla-Chr11:2372697 1.56E-48 transposed
Cla11g00204 Cla-Chr11:2372697 Cla06g00895 Cla-Chr6:13807124 3.98E-65 wgd
Cla11g00204 Cla-Chr11:2372697 Cla07g01261 Cla-Chr7:29684996 7.38E-46 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61993 PF00847 AP2 7.40E-13 CL0081 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla11g00204 K09286 - csv:101212945 337.035