Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla11g00230 ATGGGCCCCTCATCAACGCCGACGATCCAGCCGAGGGGCCGCGTGGGACCCACTTCCAAACTGGCTATTGGTTGTCGCTTTCTTAGCGTGGGGTTTCTCACCGTCGGATCATCGTTGATCAAGGAGTCTGTGATGTTGGATCAGCATCATCAGCGATGTGAACGCCCGCAGCAGATCGAAACAGCATACCGTTGGTACGCTCAACTAATCATTTTTATACTTCATGAGGCAGTTGTGCAGATCTCAAAGAAGGGATTTGAGCATTTTCCTGAAAAGAAAAAAGAAAAAAAGAAATCCCCATTCTCCAAAATCCCTCAGGTTTCAGAGAAGGAAGGAAGGAAGAAAGAGTTTCTTCAAGTTTCCAGCCATGGCGGCCGAGGCCTTACTGACGCTGAAGCTCATTACATCCGTCAACGTCAACTCCTTTACTACAGAGATGAATTTGGCGACCGTGGTGAAGAAGTCGTCGTCGATCCTAAGCTTGTTTTTGAAAATGACAGAATCAGAAATGCTTACATAGCATTACAAGCTTGGAAGCAAGCGATTCTGTCTGACCCTTCAAATCTCACTCGGAATTGGGTTGGATCTGATGTTTGTCATTACACAGGGGTTTTCTGTGCTCCGGCGCCGGATAATTCATCGATCCGTACAGTTGCCGGAATTGACCTCAACCACGGCGACATTGCCGGGTACTTGCCGGAGGAGCTTGGTCTTCTTGTGGATCTTGCATTGTTCCATATAAACTCTAATCGGTTCTGTGGGACTGTTCCTCACAAGTTCAAGAACCTGAAGAGGCTGTTCGAGTTGGATCTGAGTAACAATCGCTTCGCCGGAAAATTCCCTCGGGTGGTTCTTGAGTTGCCGGAGCTGAAGTTTTTGGATCTGAGGTTCAACGAGTTTGAAGGGACTGTACCTAAGGAGCTTTTCGATAAGGATTTGGACGCCATTTTCATCAACCATAACAGATTCCGGTTCGAGTTACCGGAAAATTTCGGGAACTCGCCGGTTTCGGTTATTGTTCTTGCTAATAACAAATTTCATGGGTGTGTGCCGGGAAGCATTGGGAATATGTCCAGATTGAATGAGATTATTCTGATGAATAATGGGTTTCGATCGTGTTTGCCGTCGGAGATTGGGTTTCTGAAGAATCTGACGGTGTTTGATGTGAGTTTTAATGAATTTTTTGGGAGTTTGCCGGAGACGATAGGTGGAATGGTGAGTTTGGAGCAGCTGAATGTGGCGCATAATTTCTTGTCTGGAAAGATTCCGGAGAGTATCTGTAAATTGCCGAATCTGCAGAACTTTACTTACTCTTATAATTTCTTTACGGGAGAGGCGCCGTCGTGCTTGGCGTTGCCGGATTTTGATGACCGGAGGAACTGTATACCGAAGCGGCCGGTGCAACGTTCTGAGAGGCAATGTAAGTCGTTCTTGTCTAAGCCTGTGGATTGCAGTTCTTTTGGATGTCCTTCTTATGTTGCTCCGTCGCCACCTGTGGTGGTGCCTTCTCCGCCACCTGTTGTTGTCCCATCGCCATCGCCACCTGTTTTCTCTCCTCCGCCACCTGAATCCGCTTCACATCCCATTTACCGGCCACTCCCTCCGCCACCGCCATCCCCATCTCCTCCTCCCCCACCT 1638 48.17 MGPSSTPTIQPRGRVGPTSKLAIGCRFLSVGFLTVGSSLIKESVMLDQHHQRCERPQQIETAYRWYAQLIIFILHEAVVQISKKGFEHFPEKKKEKKKSPFSKIPQVSEKEGRKKEFLQVSSHGGRGLTDAEAHYIRQRQLLYYRDEFGDRGEEVVVDPKLVFENDRIRNAYIALQAWKQAILSDPSNLTRNWVGSDVCHYTGVFCAPAPDNSSIRTVAGIDLNHGDIAGYLPEELGLLVDLALFHINSNRFCGTVPHKFKNLKRLFELDLSNNRFAGKFPRVVLELPELKFLDLRFNEFEGTVPKELFDKDLDAIFINHNRFRFELPENFGNSPVSVIVLANNKFHGCVPGSIGNMSRLNEIILMNNGFRSCLPSEIGFLKNLTVFDVSFNEFFGSLPETIGGMVSLEQLNVAHNFLSGKIPESICKLPNLQNFTYSYNFFTGEAPSCLALPDFDDRRNCIPKRPVQRSERQCKSFLSKPVDCSSFGCPSYVAPSPPVVVPSPPPVVVPSPSPPVFSPPPPESASHPIYRPLPPPPPSPSPPPPP 546
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2662401 2667758 + ClCG11G002540.1 Cla11g00230 284052
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla11g00230 546 SUPERFAMILY L domain-like 172 452 - -
Cla11g00230 546 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 126 546 - -
Cla11g00230 546 Pfam Leucine rich repeat 244 299 IPR001611 GO:0005515
Cla11g00230 546 Pfam Leucine Rich Repeat 407 429 IPR001611 GO:0005515
Cla11g00230 546 Gene3D Ribonuclease Inhibitor 333 476 IPR032675 -
Cla11g00230 546 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 4 126 546 - -
Cla11g00230 546 Gene3D Ribonuclease Inhibitor 172 332 IPR032675 -
Cla11g00230 546 MobiDBLite consensus disorder prediction 503 546 - -
Cla11g00230 546 MobiDBLite consensus disorder prediction 92 115 - -
Cla11g00230 546 Pfam Leucine rich repeat N-terminal domain 174 206 IPR013210 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla06g01020 Cla11g00230 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g02068 Cla-Chr5:32366629 Cla11g00230 Cla-Chr11:2662401 6.54E-07 dispersed
Cla11g00179 Cla-Chr11:2134236 Cla11g00230 Cla-Chr11:2662401 4.47E-93 dispersed
Cla05g00515 Cla-Chr5:4779447 Cla11g00230 Cla-Chr11:2662401 2.39E-155 transposed
Cla05g01769 Cla-Chr5:29552598 Cla11g00230 Cla-Chr11:2662401 1.18E-09 transposed
Cla07g00233 Cla-Chr7:2591514 Cla11g00230 Cla-Chr11:2662401 3.64E-134 transposed
Cla11g00230 Cla-Chr11:2662401 Cla06g01020 Cla-Chr6:21872214 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla11g00230 - - csv:101210261 759.599