Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla11g00279 | TCCCTATATTATGTTCCTTCCCCTCTTTTGGTCCTCCATGTACTTTGGGCTTCACATTCTGACACACTCAATCTCTCCATCCATTCATTCTCTCCCTCTCTCTTCCCCAAAATCATGGTGCCATCAAAGAAGTTTAGAGGTGTTAGGCAAAGACATTGGGGATCTTGGGTCTCTGAAATTCGTCACCCACTTCTGAAGAGAAGGGTTTGGTTGGGGACATTTGAGACGGCGGAGGAAGCAGCGAGAGCCTACGACCAGGCCGCCGTGTTAATGAGCGGCCGGAACGCAAAAACCAACTTCCCGATGAGCCAAACGGCTGCGCCGGAATTAGAAAAACCCGACAAGAATAATAATATCACTTCTCCAAAGGGCTTATCGGAGATTCTCCACGCCAAGCTTCGAAAATGCAGCAAGGCACCGTCGCCGTCGATGACGTGTCTCCGACTCGACACTGAAAATTCCCACATCGGCGTTTGGCAGAAACGGGCCGGCCAACGCTCCGACTCCAGCTGGGTCATGACCGTTCATCTCGGGAAAACCAACTCCGCCTCCGCCACCTCCGCCGCCGCCGGAGCCGCATCCGCATCCGGCGGCGACGACGACGGTGGGCAGTTGAGGAAGAATAAAAAAAGTGGGTGTTTTACCGGTTTGATCTCGTCGGAAGGTGGTGCCGGTGCATTAATGGCGGCGAGTGGGACCCACATGAAGAACTTGGAGATGGATGAAGAAGAAGAAAGAATTGCATTGCAAATGATTGAAGAGTTGCTGAGCAGAAATTGTGGTAACCCATCTGAAATTATTCAAGTTCAAGATCATGATCAAGGGAAGCAACCTTTTTACCCTCTC | 846 | 51.3 | SLYYVPSPLLVLHVLWASHSDTLNLSIHSFSPSLFPKIMVPSKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDQAAVLMSGRNAKTNFPMSQTAAPELEKPDKNNNITSPKGLSEILHAKLRKCSKAPSPSMTCLRLDTENSHIGVWQKRAGQRSDSSWVMTVHLGKTNSASATSAAAGAASASGGDDDGGQLRKNKKSGCFTGLISSEGGAGALMAASGTHMKNLEMDEEEERIALQMIEELLSRNCGNPSEIIQVQDHDQGKQPFYPL | 282 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 3216107 | 3217630 | - | ClCG11G003080.1 | Cla11g00279 | 284101 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla11g00279 | 282 | CDD | AP2 | 43 | 103 | IPR001471 | GO:0003700|GO:0006355 | |
Cla11g00279 | 282 | Pfam | AP2 domain | 44 | 88 | IPR001471 | GO:0003700|GO:0006355 | |
Cla11g00279 | 282 | Coils | Coil | 235 | 255 | - | - | |
Cla11g00279 | 282 | PANTHER | AP2-EREBP TRANSCRIPTION FACTOR | 39 | 265 | - | - | |
Cla11g00279 | 282 | Gene3D | AP2/ERF domain | 43 | 103 | IPR036955 | GO:0003700|GO:0006355 | |
Cla11g00279 | 282 | PANTHER | SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR | 39 | 265 | - | - | |
Cla11g00279 | 282 | SUPERFAMILY | DNA-binding domain | 44 | 103 | IPR016177 | GO:0003677 | |
Cla11g00279 | 282 | SMART | rav1_2 | 44 | 107 | IPR001471 | GO:0003700|GO:0006355 | |
Cla11g00279 | 282 | PRINTS | Ethylene responsive element binding protein signature | 67 | 83 | IPR001471 | GO:0003700|GO:0006355 | |
Cla11g00279 | 282 | PRINTS | Ethylene responsive element binding protein signature | 45 | 56 | IPR001471 | GO:0003700|GO:0006355 | |
Cla11g00279 | 282 | ProSiteProfiles | AP2/ERF domain profile. | 44 | 101 | IPR001471 | GO:0003700|GO:0006355 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cla06g01112 | Cla11g00279 | CCT | |
Cla06g01112 | Cla11g00279 | ECH |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla08g01357 | Cla-Chr8:26394613 | Cla11g00279 | Cla-Chr11:3216107 | 3.88E-30 | dispersed | |
Cla09g00288 | Cla-Chr9:2794654 | Cla11g00279 | Cla-Chr11:3216107 | 8.12E-32 | dispersed | |
Cla11g00279 | Cla-Chr11:3216107 | Cla09g02032 | Cla-Chr9:37908846 | 2.71E-21 | dispersed | |
Cla11g00279 | Cla-Chr11:3216107 | Cla05g01741 | Cla-Chr5:29243958 | 9.28E-53 | wgd | |
Cla11g00279 | Cla-Chr11:3216107 | Cla06g01112 | Cla-Chr6:23898441 | 4.95E-82 | wgd | |
Cla11g00279 | Cla-Chr11:3216107 | Cla07g01210 | Cla-Chr7:29109838 | 4.82E-62 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
62000 | PF00847 | AP2 | 4.50E-12 | CL0081 | Cla | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla11g00279 | - | - | bhj:120080144 | 397.897 |