Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla11g00279 TCCCTATATTATGTTCCTTCCCCTCTTTTGGTCCTCCATGTACTTTGGGCTTCACATTCTGACACACTCAATCTCTCCATCCATTCATTCTCTCCCTCTCTCTTCCCCAAAATCATGGTGCCATCAAAGAAGTTTAGAGGTGTTAGGCAAAGACATTGGGGATCTTGGGTCTCTGAAATTCGTCACCCACTTCTGAAGAGAAGGGTTTGGTTGGGGACATTTGAGACGGCGGAGGAAGCAGCGAGAGCCTACGACCAGGCCGCCGTGTTAATGAGCGGCCGGAACGCAAAAACCAACTTCCCGATGAGCCAAACGGCTGCGCCGGAATTAGAAAAACCCGACAAGAATAATAATATCACTTCTCCAAAGGGCTTATCGGAGATTCTCCACGCCAAGCTTCGAAAATGCAGCAAGGCACCGTCGCCGTCGATGACGTGTCTCCGACTCGACACTGAAAATTCCCACATCGGCGTTTGGCAGAAACGGGCCGGCCAACGCTCCGACTCCAGCTGGGTCATGACCGTTCATCTCGGGAAAACCAACTCCGCCTCCGCCACCTCCGCCGCCGCCGGAGCCGCATCCGCATCCGGCGGCGACGACGACGGTGGGCAGTTGAGGAAGAATAAAAAAAGTGGGTGTTTTACCGGTTTGATCTCGTCGGAAGGTGGTGCCGGTGCATTAATGGCGGCGAGTGGGACCCACATGAAGAACTTGGAGATGGATGAAGAAGAAGAAAGAATTGCATTGCAAATGATTGAAGAGTTGCTGAGCAGAAATTGTGGTAACCCATCTGAAATTATTCAAGTTCAAGATCATGATCAAGGGAAGCAACCTTTTTACCCTCTC 846 51.3 SLYYVPSPLLVLHVLWASHSDTLNLSIHSFSPSLFPKIMVPSKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDQAAVLMSGRNAKTNFPMSQTAAPELEKPDKNNNITSPKGLSEILHAKLRKCSKAPSPSMTCLRLDTENSHIGVWQKRAGQRSDSSWVMTVHLGKTNSASATSAAAGAASASGGDDDGGQLRKNKKSGCFTGLISSEGGAGALMAASGTHMKNLEMDEEEERIALQMIEELLSRNCGNPSEIIQVQDHDQGKQPFYPL 282
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3216107 3217630 - ClCG11G003080.1 Cla11g00279 284101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla11g00279 282 CDD AP2 43 103 IPR001471 GO:0003700|GO:0006355
Cla11g00279 282 Pfam AP2 domain 44 88 IPR001471 GO:0003700|GO:0006355
Cla11g00279 282 Coils Coil 235 255 - -
Cla11g00279 282 PANTHER AP2-EREBP TRANSCRIPTION FACTOR 39 265 - -
Cla11g00279 282 Gene3D AP2/ERF domain 43 103 IPR036955 GO:0003700|GO:0006355
Cla11g00279 282 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 39 265 - -
Cla11g00279 282 SUPERFAMILY DNA-binding domain 44 103 IPR016177 GO:0003677
Cla11g00279 282 SMART rav1_2 44 107 IPR001471 GO:0003700|GO:0006355
Cla11g00279 282 PRINTS Ethylene responsive element binding protein signature 67 83 IPR001471 GO:0003700|GO:0006355
Cla11g00279 282 PRINTS Ethylene responsive element binding protein signature 45 56 IPR001471 GO:0003700|GO:0006355
Cla11g00279 282 ProSiteProfiles AP2/ERF domain profile. 44 101 IPR001471 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla06g01112 Cla11g00279 CCT
Cla06g01112 Cla11g00279 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla08g01357 Cla-Chr8:26394613 Cla11g00279 Cla-Chr11:3216107 3.88E-30 dispersed
Cla09g00288 Cla-Chr9:2794654 Cla11g00279 Cla-Chr11:3216107 8.12E-32 dispersed
Cla11g00279 Cla-Chr11:3216107 Cla09g02032 Cla-Chr9:37908846 2.71E-21 dispersed
Cla11g00279 Cla-Chr11:3216107 Cla05g01741 Cla-Chr5:29243958 9.28E-53 wgd
Cla11g00279 Cla-Chr11:3216107 Cla06g01112 Cla-Chr6:23898441 4.95E-82 wgd
Cla11g00279 Cla-Chr11:3216107 Cla07g01210 Cla-Chr7:29109838 4.82E-62 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62000 PF00847 AP2 4.50E-12 CL0081 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla11g00279 - - bhj:120080144 397.897