Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cla11g00285 | ATGTCAAGCTGCATCAACAGTGCTCAAGAACAACTCTGCTATATCCCCTGCAATTTTTGCAATATTGTTCTAGCGGTGAGTGTTCCATGCAATAATCTCTTTGACATCGTGACCGTCCGATGTGGTCACTGCAGCAATCTCTGGTCTGTGAACATGGCTGCTGCTTTCCAATCTCTCTCATGGCAAAATTCCCAGGCATCAAACCATAGCCACAGTGGCAGTGGGGCTGATCACTACAGAGTTGAATTGGGATCATCATCAAAATGCAACAACAAGATGAAAATGAGAGCACCAATTAAAAACTCTACAACTGATCATGATCAAAGGATCATTAATCGACCTCCCGAGAAGAGGCAGAGAGTACCTTCTGCATATAATCAGTTTATAAAAGAGGAAATCCAGAGGATCAAAGCAACTAATCCAGATATTACCCACAGGGAAGCATTCAGTACTGCTGCTAAAAATTGGGCACATTTCCCACATATTCATTTTGGCCTCATGCTGGATACCAACAATCTGCAGACCAAGAATGATGGATCTGAGAAGCATCTGATGTCAGTGCCAGGGCTGCACTATTGA | 579 | 43.35 | MSSCINSAQEQLCYIPCNFCNIVLAVSVPCNNLFDIVTVRCGHCSNLWSVNMAAAFQSLSWQNSQASNHSHSGSGADHYRVELGSSSKCNNKMKMRAPIKNSTTDHDQRIINRPPEKRQRVPSAYNQFIKEEIQRIKATNPDITHREAFSTAAKNWAHFPHIHFGLMLDTNNLQTKNDGSEKHLMSVPGLHY | 192 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 11 | 3276437 | 3280111 | - | ClCG11G003140.2 | Cla11g00285 | 284107 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cla11g00285 | 192 | PANTHER | PROTEIN YABBY 6-RELATED | 1 | 182 | IPR006780 | GO:0007275 | |
| Cla11g00285 | 192 | Pfam | YABBY protein | 8 | 166 | IPR006780 | GO:0007275 | |
| Cla11g00285 | 192 | SUPERFAMILY | HMG-box | 108 | 159 | IPR036910 | - | |
| Cla11g00285 | 192 | PANTHER | AXIAL REGULATOR YABBY 5 | 1 | 182 | - | - | |
| Cla11g00285 | 192 | Gene3D | High mobility group box domain | 102 | 161 | IPR036910 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cla01g00368 | Cla-Chr1:4042952 | Cla11g00285 | Cla-Chr11:3276437 | 6.24E-55 | dispersed | |
| Cla05g02553 | Cla-Chr5:36831702 | Cla11g00285 | Cla-Chr11:3276437 | 8.70E-40 | dispersed | |
| Cla08g01746 | Cla-Chr8:29943203 | Cla11g00285 | Cla-Chr11:3276437 | 1.40E-39 | dispersed | |
| Cla10g00285 | Cla-Chr10:3758007 | Cla11g00285 | Cla-Chr11:3276437 | 2.14E-15 | dispersed | |
| Cla02g02184 | Cla-Chr2:36970061 | Cla11g00285 | Cla-Chr11:3276437 | 1.83E-61 | transposed | |
| Cla05g02399 | Cla-Chr5:35548815 | Cla11g00285 | Cla-Chr11:3276437 | 2.29E-40 | transposed | |
| Cla11g00285 | Cla-Chr11:3276437 | Cla06g01123 | Cla-Chr6:24074518 | 3.18E-88 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 62001 | PF04690 | YABBY | 5.30E-71 | CL0114 | Cla | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cla11g00285 | K25796 | - | csv:101219877 | 387.882 |