Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla11g00285 ATGTCAAGCTGCATCAACAGTGCTCAAGAACAACTCTGCTATATCCCCTGCAATTTTTGCAATATTGTTCTAGCGGTGAGTGTTCCATGCAATAATCTCTTTGACATCGTGACCGTCCGATGTGGTCACTGCAGCAATCTCTGGTCTGTGAACATGGCTGCTGCTTTCCAATCTCTCTCATGGCAAAATTCCCAGGCATCAAACCATAGCCACAGTGGCAGTGGGGCTGATCACTACAGAGTTGAATTGGGATCATCATCAAAATGCAACAACAAGATGAAAATGAGAGCACCAATTAAAAACTCTACAACTGATCATGATCAAAGGATCATTAATCGACCTCCCGAGAAGAGGCAGAGAGTACCTTCTGCATATAATCAGTTTATAAAAGAGGAAATCCAGAGGATCAAAGCAACTAATCCAGATATTACCCACAGGGAAGCATTCAGTACTGCTGCTAAAAATTGGGCACATTTCCCACATATTCATTTTGGCCTCATGCTGGATACCAACAATCTGCAGACCAAGAATGATGGATCTGAGAAGCATCTGATGTCAGTGCCAGGGCTGCACTATTGA 579 43.35 MSSCINSAQEQLCYIPCNFCNIVLAVSVPCNNLFDIVTVRCGHCSNLWSVNMAAAFQSLSWQNSQASNHSHSGSGADHYRVELGSSSKCNNKMKMRAPIKNSTTDHDQRIINRPPEKRQRVPSAYNQFIKEEIQRIKATNPDITHREAFSTAAKNWAHFPHIHFGLMLDTNNLQTKNDGSEKHLMSVPGLHY 192
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3276437 3280111 - ClCG11G003140.2 Cla11g00285 284107

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla11g00285 192 PANTHER PROTEIN YABBY 6-RELATED 1 182 IPR006780 GO:0007275
Cla11g00285 192 Pfam YABBY protein 8 166 IPR006780 GO:0007275
Cla11g00285 192 SUPERFAMILY HMG-box 108 159 IPR036910 -
Cla11g00285 192 PANTHER AXIAL REGULATOR YABBY 5 1 182 - -
Cla11g00285 192 Gene3D High mobility group box domain 102 161 IPR036910 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla11g00285 K25796 YAB; plant-specific transcription factor YABBY family protein - csv:101219877 387.882
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00368 Cla-Chr1:4042952 Cla11g00285 Cla-Chr11:3276437 6.24E-55 dispersed
Cla05g02553 Cla-Chr5:36831702 Cla11g00285 Cla-Chr11:3276437 8.70E-40 dispersed
Cla08g01746 Cla-Chr8:29943203 Cla11g00285 Cla-Chr11:3276437 1.40E-39 dispersed
Cla10g00285 Cla-Chr10:3758007 Cla11g00285 Cla-Chr11:3276437 2.14E-15 dispersed
Cla02g02184 Cla-Chr2:36970061 Cla11g00285 Cla-Chr11:3276437 1.83E-61 transposed
Cla05g02399 Cla-Chr5:35548815 Cla11g00285 Cla-Chr11:3276437 2.29E-40 transposed
Cla11g00285 Cla-Chr11:3276437 Cla06g01123 Cla-Chr6:24074518 3.18E-88 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla05g02399 . 12 167 C2C2-YABBY Transcription Factor Family AT1G69180 57.1 9.9e-46 180.3
Cla01g00368 CCT 82 242 C2C2-YABBY Transcription Factor Family AT2G45190 58.6 2.1e-42 169.1
Cla02g02184 . 1 198 C2C2-YABBY Transcription Factor Family AT1G08465 58.0 1.4e-50 196.4
Cla01g00368 CCT 38 232 C2C2-YABBY Transcription Factor Family AT1G08465 51.8 1.6e-43 172.9
Cla11g00285 . 5 180 C2C2-YABBY Transcription Factor Family AT1G08465 50.3 7.5e-41 164.1
Cla01g00368 CCT 49 241 C2C2-YABBY Transcription Factor Family AT4G00180 55.5 4.5e-50 194.9
Cla05g02553 . 1 164 C2C2-YABBY Transcription Factor Family AT1G23420 53.8 2.0e-39 159.8
Cla11g00285 . 8 171 C2C2-YABBY Transcription Factor Family AT2G26580 71.3 4.4e-61 231.1
Cla06g01123 . 8 222 C2C2-YABBY Transcription Factor Family AT2G26580 55.8 4.3e-56 214.5
Cla02g02184 . 1 198 C2C2-YABBY Transcription Factor Family AT2G26580 52.0 1.3e-44 176.4
Cla01g00368 CCT 40 204 C2C2-YABBY Transcription Factor Family AT2G26580 54.4 6.4e-44 174.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001272 2 2 3 3 3 2 4 2 2 2 2 2 4 2 2 4 2 2 4 2 2 2 2 2 2 2 2 7 3 1 76
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62001 PF04690 YABBY 5.30E-71 CL0114 Cla TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla11g00285 Cla_Chr11 FPKM 0.433526 0.420284 0.565982 0.293185 0.050825 0.126727 0.048875 0.0 0.23456 0.0