Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla11g00299 ATGGAGGAAAATGAAAACTGTGGCTGTTGGGCTGTCCTTAAACGCACCGTTTCAGATGTCTCCAAATCTTCCCCTTCTTCCAAACATTCCCCCAACTCCATTCCTCGCCTTACCTTACTTTACGATTCAGCTACCGAGACCCGATATTTAAACGCAAGCGACCGAGATTTGTGTGCGCCGGCCGAAGCTCGGCTATCCTTCGACAATGCTCCGCCGCTGCCGCCGACGAGGTTAGAGGACAAATTTAAACGCCAGTTACTGAAATTTTCATTTCAGGAACTAAGATCGGCGACCGGAAATTTCCGGCCGGATAGCATTCTGGGAGAAGGAGGGTTTGGATTCGTTTTCAAAGGATGGATTGAAGAGAATGGGACGGCGCCGGCCAAACCTGGATCAGGAATCACAGTCGCCGTCAAAAGCTTGAAACCGGATGGTCTTCAAGGACACAGAGAATGGGAGGCTGAGGTTAGCTTTCTTGGACAGCTTCACCATCCCAATCTTGTTAAACTTATTGGGTACTGTATTGAAGATGATCAAAGGCTTCTTGTATATGAATTTATGACGCGTGGTAGTCTTGAAAACCATCTTTTCAGAAGGACTATACCTCTTCCATGGTCAAACAGGATTAAAATTGCACTTGCTGCAGCCAAAGGCTTGGCCTTCCTCCACAATGGTCCGGAACCTGTCATATATAGAGATTTCAAAACATCAAACATATTGCTTGATACAGAGTACAATGCGAAGCTTTCGGATTTTGGTTTGGCAAAGGCTGGGCCTCAAGGAGACAAAACACATGTTTCCACCAGAGTAGTTGGAACATATGGCTATGCTGCGCCAGAATATCTAATGACAGGGCATTTGACATCAAAGAGTGATGTCTATAGCTTCGGTGTTGTCCTACTCGAGATCTTAACGGGGAGGAGATCAATGGACAAGAAACGTCCAAGTGGTGAGCAAAACCTAGTGTCATGGGCTCGACCATATTTAGATGACAAAAGGAAGCTTTACCATATAGTGGACCCTCGCTTGGAGCTTAACTACTCCATCCAGGGGGTTCAAAAAGTCTCTCGACTAGCTTCTCACTGCATCAGTAGAGATCCAAAATCTCGTCCTACCATGGATGAAGTTGTCAAGGTTCTCATTCCACTACAAGATCTTAACGACCTTGCCATCCTAGCATATCATTCACGCCTGTCTCAGCAAGGTCGACGAAAGAAGAAATCAGATGGACTACACCAGTTAACATACACCCAGTCAAGAAATATTAGAACCTCTCCTTTGAATGTTGGAGTTCATCGTCGTCGGTAA 1308 45.8 MEENENCGCWAVLKRTVSDVSKSSPSSKHSPNSIPRLTLLYDSATETRYLNASDRDLCAPAEARLSFDNAPPLPPTRLEDKFKRQLLKFSFQELRSATGNFRPDSILGEGGFGFVFKGWIEENGTAPAKPGSGITVAVKSLKPDGLQGHREWEAEVSFLGQLHHPNLVKLIGYCIEDDQRLLVYEFMTRGSLENHLFRRTIPLPWSNRIKIALAAAKGLAFLHNGPEPVIYRDFKTSNILLDTEYNAKLSDFGLAKAGPQGDKTHVSTRVVGTYGYAAPEYLMTGHLTSKSDVYSFGVVLLEILTGRRSMDKKRPSGEQNLVSWARPYLDDKRKLYHIVDPRLELNYSIQGVQKVSRLASHCISRDPKSRPTMDEVVKVLIPLQDLNDLAILAYHSRLSQQGRRKKKSDGLHQLTYTQSRNIRTSPLNVGVHRRR 435
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3455526 3462827 - ClCG11G003290.1 Cla11g00299 284121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla11g00299 435 ProSitePatterns Serine/Threonine protein kinases active-site signature. 229 241 IPR008271 GO:0004672|GO:0006468
Cla11g00299 435 Gene3D Transferase(Phosphotransferase) domain 1 187 395 - -
Cla11g00299 435 PANTHER OS01G0588500 PROTEIN 79 403 - -
Cla11g00299 435 PANTHER OS01G0588500 PROTEIN-RELATED 79 403 - -
Cla11g00299 435 Pfam Protein tyrosine and serine/threonine kinase 105 380 IPR001245 GO:0004672|GO:0006468
Cla11g00299 435 ProSitePatterns Protein kinases ATP-binding region signature. 107 139 IPR017441 GO:0005524
Cla11g00299 435 CDD STKc_IRAK 107 383 - -
Cla11g00299 435 SUPERFAMILY Protein kinase-like (PK-like) 84 383 IPR011009 -
Cla11g00299 435 Gene3D Phosphorylase Kinase; domain 1 75 186 - -
Cla11g00299 435 ProSiteProfiles Protein kinase domain profile. 101 398 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla06g01137 Cla11g00299 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla09g01920 Cla-Chr9:36848973 Cla11g00299 Cla-Chr11:3455526 4.34E-119 dispersed
Cla10g00201 Cla-Chr10:2326448 Cla11g00299 Cla-Chr11:3455526 1.14E-95 dispersed
Cla10g02146 Cla-Chr10:37085660 Cla11g00299 Cla-Chr11:3455526 1.13E-63 dispersed
Cla11g00299 Cla-Chr11:3455526 Cla11g01094 Cla-Chr11:22362922 2.66E-137 dispersed
Cla05g02471 Cla-Chr5:36132739 Cla11g00299 Cla-Chr11:3455526 3.84E-153 transposed
Cla08g00888 Cla-Chr8:21363945 Cla11g00299 Cla-Chr11:3455526 3.58E-73 transposed
Cla09g01795 Cla-Chr9:35478580 Cla11g00299 Cla-Chr11:3455526 6.18E-177 transposed
Cla11g00299 Cla-Chr11:3455526 Cla06g01137 Cla-Chr6:24294637 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80919 PF07714 PK_Tyr_Ser-Thr 8.60E-49 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla11g00299 - - csv:101217498 834.713