Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla11g00303 ATGGAACCTGCCGATTCCACCAATGGCGATGAAGAATCCATTATTACTCCCTTGCTTGCTCAGAAATCATTTGCCAATTCTTCCTCACAGGTCGCTATTGTTGGGGCTAATGTCTGCCCCATTGAGAGCCTTGACTACGAGACTTTTGATAATGAGTTCTTCATGCAAGATTGGAGGAGTCGTGAGGATTTCCAGATATTTCAATACTTGGTTATGAAGTGGCTTTCATGCTTCTTGATCGGTTTGATTATGGGTCTTGTTGGATTTTTCAACAACCTGGCGGTGGAGAATATTGCAGGGAAGAAGTTTGTGGTCACTTCGAATATGATGCTTGAGGGCAGGTATGGGATGGCTTTTCTTGTTTTCTCTGTTTCCAATTTAGTTCTCACCCTTTTCGCATCTGTCATTACGGCATTGATCTGTCCCCAAGCAGCCGGCTCAGGTATACCAGAAGTAAAGGCTTATCTGAATGGCGTGGATGCACCTGGAATATTATCGCCTCGAACACTGTTAGTGAAGATTGTTGGCAGCATTTCTATTGTGTCATCATCTATGATCGTCGGAAAAGCTGGGCCTATGGTACATACAGGGGCATGTGTTGCATCCTTGGTAGGTCAGGGGGGTTTCAAAATATTTGGCTTGACATGGAGATGGCTATACCATCTCAAGAATGATCGAGATAGGCGGGATCTTGTAACATGTGGAGCCGCTGCTGGAATAGCTGCTGCTTTTCGTGCTCCTGTTGGTGGTGTGTTGTTTGCTTTTGAAGAGATGGCATCCTGGTGGAGAAGTGCCCTTCTGTGGCGATCATTTTTCACAACGGCTGTAGTTGCTGTGGTCTTACGCTCACTGATTGACCTTTGTTTAAATGGATTATGTGGATTATTTGGTAAAGGGGGACTTATAATATTTGATACCTACTCAGACTCTCCCACATATCACCTCGAAGATCTACCTCCGGTGCTTGTTCTTGCTTTTATTGGAGGCATACTTGGAAGCTTATATAATTTTCTTTTGAATAAGTTTCTTCGCATTTACAATCTCATACACGAGAAAGGTATTATTTACAAAATTTTACTGGCTTGCTCGGTCTCAATTTTCACATCCTTCCTTCTTTTTGGATTACCATGGTTCGCATCATGCCAACCTTGCCCATCAAGTGCTCGAGAAATTTGTCCTACGATAGGTCGATCTGGTAACTTCAAGAAGTTTCAGTGTGCTCCTGGTCACTACAATGATCTTGCAAGTCTCATATTTAACACCAATGATGATGCCATAAAAAATCTCTTTAGCAAGGGCACGGACTCCGAGTTTCAGTTATCGTCAATGCTCACATTTTTCGTTGCCTGTTTTTCCTTGAGTATTCTCAGTTATGGGACAGTTGCTCCTGTTGGCCTGTTTGTCCCTGTTATTGTGACTGGAGCTTCTTATGGTCGTTTCGTTGGAATGGTTGTCAGTCCGTACACAAACCTCAGCCATGGCTTCTTTGCGATATTAGGCGCTGCTTCATTTCTCGGGGGGTCAATGAGGACAACAGTGTCTCTCTGTGTTATTATGCTTGAATTGACCAATAATTTGTTGTTGTTGCCTTTAATAATGTTGGTTCTCCTTATTTCCAAGACTGTAGCTGATGCTTTCAACAGTAATATATATAACTTGATCATGAAAGCGAAAGGATTTCCTTATCTAGAAGGCCATGTTGAGCCATACATGAGGCAGCTCACTGTTGCTGATGTGTTAACGAGTCCGCTTCAATTATTGCATGGCATTGAGAAGGTTTGTAACGTAATAAACATTCTCAGAATGACGAGCCATCACGGATTTCCTGTCATTGATGAACCTCCTTTCTCCGAAGTCCCTGTTTTATATGGTCTAATTCTCAGAGCCCATCTTATCATGTTGTTAAAGAAGAAAGCTTTCTTGGCCGTGCCAATACGTGGATCAGAAAGAGAAGATCTCTGTAAGCTATTCTCAGCTGATGATTTTGTAAAGATGGGTTCGGGTGACGTTGAAAGGGTTGAAGATGTACAATTGACCAATGAAGAGATGGAGATGTTCATTGATCTACATCCGTTTGCAAATACTTCACCTTGTACCGTCTTGGAGACAATGTCACTCGCAAAGGCTCTCGAAATTTTTCGAGAAACTGGTTTAAGACACATGCTGGTGATACCCAAGGTCCCTGGGAGATTGCCCGTGGTTGGTGTATTGACTCGGCACGACTTCATGCCAGATTACATTCTTAGTTTGCATCCATTGCTAGAGAAGAGCAGATGGAAAAGAAGCCACATAGAAATGGTGAAGAGGTTCAAGGTGTGGAGTTACAGAGAAGGAGAACAGCCTCTGTTCCATGACGGTCCATTGAATAGCATATACGCCATTGAAGGCCAATTTATAGATGAGATAGATTGCAGCAAGAGCCCCTTCAGAGCCAGCCATCCTGATCAAGCCCATGTATTTCTTCTTCCTTTGAGCATCACCAACATCATTCATTTCGTTTACAGGCCAATCACTTCTCCCACTGACTACAGCCGTGATCGGATGCGCCGTGTCACAAATGATTACATTCAAGTTGTTGCCGACAGGTATCCATATTGGAACCGAAGCAAAGGTGCTGATCATTTTGTGGTTTCATGCCATGATTGGGCACCAGAAATCTCAGATGCCAACCCCCAACTGTTCAAAAACTTCATCAGGGTAGTATGCAATGCAAACGTCACAGAAGGCTTCCGTCCCAACATAGACATTCCACTCCCAGAAATCACCATCCACCCTGGAACATTAGGGCCACCGGACTTAGGCCAGCCACCAGAAAGCCGCCCAATTCTAGCTTTCTTCGCAGGAGGAGCTCATGGATACATCAGGAAGATATTGATCCAGCATTGGAAGGGTAAGGACAAAGAAGTTCAAGTTCATGAATACCTTCCTAAAAACCAAAATTACACCAAATTGATTGGAGAAAGCAAGTTTTGTCTCTGCCCTAGTGGCTTTGAAGTGGCAAGCCCGAGGGTGGTGGAAGCCATCTATGGTGGTTGTGTTCCAGTGATCATTTCTGATAATTATTCATTACCATTCAGCGATGTTCTAGATTGGAGTCGGTTTTCAGTACAGATACCTGTTCAAAGAATACCAGAAATAAAAACAATTTTGAACGCTGTCTCAGAAGAGAAGTATTTGAAGATGTACAAAGGAGTTATCAAAGTAAAGAGGCATTTCAAGATAAATAGGCCTGCCAAGCCATTTGATGTAATTCATATGGTGCTTCATTCACTGTGGCTTAGGAGGCTTAACTTTGGCCTTCCTCATTGA 3309 43.19 MEPADSTNGDEESIITPLLAQKSFANSSSQVAIVGANVCPIESLDYETFDNEFFMQDWRSREDFQIFQYLVMKWLSCFLIGLIMGLVGFFNNLAVENIAGKKFVVTSNMMLEGRYGMAFLVFSVSNLVLTLFASVITALICPQAAGSGIPEVKAYLNGVDAPGILSPRTLLVKIVGSISIVSSSMIVGKAGPMVHTGACVASLVGQGGFKIFGLTWRWLYHLKNDRDRRDLVTCGAAAGIAAAFRAPVGGVLFAFEEMASWWRSALLWRSFFTTAVVAVVLRSLIDLCLNGLCGLFGKGGLIIFDTYSDSPTYHLEDLPPVLVLAFIGGILGSLYNFLLNKFLRIYNLIHEKGIIYKILLACSVSIFTSFLLFGLPWFASCQPCPSSAREICPTIGRSGNFKKFQCAPGHYNDLASLIFNTNDDAIKNLFSKGTDSEFQLSSMLTFFVACFSLSILSYGTVAPVGLFVPVIVTGASYGRFVGMVVSPYTNLSHGFFAILGAASFLGGSMRTTVSLCVIMLELTNNLLLLPLIMLVLLISKTVADAFNSNIYNLIMKAKGFPYLEGHVEPYMRQLTVADVLTSPLQLLHGIEKVCNVINILRMTSHHGFPVIDEPPFSEVPVLYGLILRAHLIMLLKKKAFLAVPIRGSEREDLCKLFSADDFVKMGSGDVERVEDVQLTNEEMEMFIDLHPFANTSPCTVLETMSLAKALEIFRETGLRHMLVIPKVPGRLPVVGVLTRHDFMPDYILSLHPLLEKSRWKRSHIEMVKRFKVWSYREGEQPLFHDGPLNSIYAIEGQFIDEIDCSKSPFRASHPDQAHVFLLPLSITNIIHFVYRPITSPTDYSRDRMRRVTNDYIQVVADRYPYWNRSKGADHFVVSCHDWAPEISDANPQLFKNFIRVVCNANVTEGFRPNIDIPLPEITIHPGTLGPPDLGQPPESRPILAFFAGGAHGYIRKILIQHWKGKDKEVQVHEYLPKNQNYTKLIGESKFCLCPSGFEVASPRVVEAIYGGCVPVIISDNYSLPFSDVLDWSRFSVQIPVQRIPEIKTILNAVSEEKYLKMYKGVIKVKRHFKINRPAKPFDVIHMVLHSLWLRRLNFGLPH 1102
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3533373 3543247 - ClCG11G003350.2 Cla11g00303 284125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla11g00303 1102 Pfam Voltage gated chloride channel 130 544 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cla11g00303 1102 SUPERFAMILY Clc chloride channel 51 565 IPR014743 -
Cla11g00303 1102 CDD CBS_pair_voltage-gated_CLC_euk_bac 575 745 - -
Cla11g00303 1102 Gene3D Clc chloride channel 65 563 - -
Cla11g00303 1102 SUPERFAMILY CBS-domain pair 566 743 IPR046342 -
Cla11g00303 1102 Pfam CBS domain 695 742 IPR000644 -
Cla11g00303 1102 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 11 769 - -
Cla11g00303 1102 Pfam Exostosin family 769 1052 IPR040911 -
Cla11g00303 1102 Gene3D - 564 744 IPR046342 -
Cla11g00303 1102 PRINTS Chloride channel signature 512 531 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cla11g00303 1102 PRINTS Chloride channel signature 173 192 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cla11g00303 1102 PRINTS Chloride channel signature 237 256 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cla11g00303 1102 PRINTS Chloride channel signature 462 482 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cla11g00303 1102 PRINTS Chloride channel signature 494 510 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cla11g00303 1102 PRINTS Chloride channel signature 550 564 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cla11g00303 1102 PRINTS Chloride channel signature 142 159 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cla11g00303 1102 PANTHER CHLORIDE CHANNEL PROTEIN 11 769 - -
Cla11g00303 1102 ProSiteProfiles CBS domain profile. 693 753 IPR000644 -
Cla11g00303 1102 PRINTS Plant CLC chloride channel signature 290 297 IPR002251 GO:0005247|GO:0006821|GO:0016020
Cla11g00303 1102 PRINTS Plant CLC chloride channel signature 258 266 IPR002251 GO:0005247|GO:0006821|GO:0016020
Cla11g00303 1102 PRINTS Plant CLC chloride channel signature 272 282 IPR002251 GO:0005247|GO:0006821|GO:0016020
Cla11g00303 1102 PRINTS Plant CLC chloride channel signature 414 430 IPR002251 GO:0005247|GO:0006821|GO:0016020
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla09g00645 Cla-Chr9:6112168 Cla11g00303 Cla-Chr11:3533373 3.24E-80 dispersed
Cla02g01427 Cla-Chr2:28785298 Cla11g00303 Cla-Chr11:3533373 5.70E-16 transposed
Cla04g01198 Cla-Chr4:27126317 Cla11g00303 Cla-Chr11:3533373 6.37E-15 transposed
Cla06g00567 Cla-Chr6:6873535 Cla11g00303 Cla-Chr11:3533373 3.17E-162 transposed
Cla10g00694 Cla-Chr10:10693947 Cla11g00303 Cla-Chr11:3533373 1.77E-65 transposed
Cla11g00675 Cla-Chr11:7891142 Cla11g00303 Cla-Chr11:3533373 0 transposed
Cla11g00303 Cla-Chr11:3533373 Cla06g01150 Cla-Chr6:24520261 1.17E-17 wgd
Cla11g00303 Cla-Chr11:3533373 Cla07g01137 Cla-Chr7:28251948 6.81E-27 wgd
Cla11g00303 Cla-Chr11:3533373 Cla08g01344 Cla-Chr8:26278320 1.35E-119 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla11g00303 K05016 - csv:101216071 1384.78