Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla11g00324 ATGACTGTGGAGGTTGGAAGGGCTAATTTGGTGGGTGAAAATGAGGATATGGATCAATTTCCTATTGGTATGCGTATTCTTGCTGTGGATGATGACCCCATTTGCCTTAAGGTTTTGGAGAATTTGCTTCGTAAATGCCAATATCATGTTACAACAACCAATCAGGCGGTTCAGGCACTTAAAATGTTGAGGGAGAACAAAAACAGGTTTGACCTGGTTATCAGCGATGTTAACATGCCAGACATGGATGGTTTTAAGCTCCTTGAGCTAGTAGGCCTTGAAATGGACCTACCTGTTATCATGTTGTCTGCGCATAGCAATACCGAACTTGTAAAGAAGGGAGTTATTCATGGGGCGTGTGACTATTTGCTGAAACCTGTTCGAATTGAAGAATTGAAGAATATATGGCAACATGTCCTTCGGAGAAAGAAGCCCTCTGCTAAGAACCAAAATAAGTGCACTAATGGAAATAACACGAGTCAAAGTGTTGAAGGTGCAAAAGGTTTTCCACCTGCAATCAGTACTGATAATGAGAAACCTGGTAAAAGGCAAAAAGACCAGGACGACGACGAGGAAGGAGGTGAAGAAGACAGTACTTATGAGAATGATGACTCCTCAACCCAAAAAAAGCCAAGGGTAAATTGGTATGACGGAGATGAAAATTTGCACAGGAAGTTTGTGGCAGCTGTTAACTTTTTGGGCTATGAAAAGGCTGTTCCTAAGAAGATACTTGATCTGATGAATGTTGAAGGACTTACAAGAGAAAATGTGGCCAGCCATCTTCAGGCATTGATCTTTTTCTTGCCTTTTAAATACAGACAATACCTTAAAAAACTGTGTAGTGAGGAAGCTCAGCAATGTAACATGATGGGTGCATTTGGAGGTAAACAAACCTCCTTCAGGCCCATGGCTTCACTCAATGGATTTTCAATGACTGGAACAGGAAGGCTCTCAAATGCTACATTCTCGCCGTATCCCTCTCAAGAAATAGTTGGTCAATTAAACTCTACTTCTGGATTGAGTTTACATGGAATTGCTTCCTCTGGAATGTTCCAGTCCCATAAATTAAATAGCTCATTAAATACCTTTGGGAAATCCCATCCAGCTTTCTTGCTTGCCAACCAACCTCCACACACATTCAATGGTATTTCAACGTCATCGGATCACATCCAGTTGCATCGGGATAAATGCACTCTGTCATTCAAAGAGTCTAATTCGATAAATGATGCCTCAAGTTTTACAGTTTCCACCAGCTTCCCTGATGCTAGAATGGCTGTTGGTAGCTCAAGCAATTATGATTTCGGTTCGAGCCATTTGTTGATGTTACGAGGACAGAAGCAACAGATTCAAGGTGGTGGAGAATTTGGAGGTCAGTCTTCTCTTAAGGTAACTCTAGACAACCCAGAACCGTTAGCAAACGGCACAGGTGTTTCTAATATTTTGGGCCATGGTGAGTCTAACAAAAACTGGCCGGGATCAATCCAGCTGCCCAAGTTTTCATCTAATGTCTCAGTCACTGGAATTTACCCTCCTGCTGGAATGCCTGCTACTTATTTGACAATTTCCTCGGCTCAGCCTGATAATGACAACTTTCCTGTTGGTTTTCCTTCAACAAGTGTGGATTCAAGTTCTCAGCTTGATTTAAGAGGGGACACACAATGCTATGAAGAACTAATTGGTAGTGTTGTTGAAGCCATGAATGGAAGATCAAAACAACAATGGGATGCAGCTAAACAGGATTATTATGGCAACCATAGTTCCATTGTGAGAGACTCTCTAGTTTCTGGGAATAGTGTTGTAGATCCCTTGAACCAGATGGCAAATCAGAACAATGCAATCTGTCTAGAAAACATTGGAAGCTCTTCGACTAACCAATTGAATGATGGTGCTCCAACCTTCATTCACAATGGTGCGGAAATATCTGCAATGGACACTTGGATGAACTACGATGGAAAAATTCTCATGGATCAAACAAAGCTACAAAGTGGATTTGCAAATTCTAGTTTTAATTCCTTGGATGAATTGGTTAATGCTCTGTCAAAACAGGATCAAGATCAATCCATTCAAATAAATGAAGAATTTGGATTTGATGCCCAATCTCTCGGGTCGTCATGTATATGA 2121 41.16 MTVEVGRANLVGENEDMDQFPIGMRILAVDDDPICLKVLENLLRKCQYHVTTTNQAVQALKMLRENKNRFDLVISDVNMPDMDGFKLLELVGLEMDLPVIMLSAHSNTELVKKGVIHGACDYLLKPVRIEELKNIWQHVLRRKKPSAKNQNKCTNGNNTSQSVEGAKGFPPAISTDNEKPGKRQKDQDDDEEGGEEDSTYENDDSSTQKKPRVNWYDGDENLHRKFVAAVNFLGYEKAVPKKILDLMNVEGLTRENVASHLQALIFFLPFKYRQYLKKLCSEEAQQCNMMGAFGGKQTSFRPMASLNGFSMTGTGRLSNATFSPYPSQEIVGQLNSTSGLSLHGIASSGMFQSHKLNSSLNTFGKSHPAFLLANQPPHTFNGISTSSDHIQLHRDKCTLSFKESNSINDASSFTVSTSFPDARMAVGSSSNYDFGSSHLLMLRGQKQQIQGGGEFGGQSSLKVTLDNPEPLANGTGVSNILGHGESNKNWPGSIQLPKFSSNVSVTGIYPPAGMPATYLTISSAQPDNDNFPVGFPSTSVDSSSQLDLRGDTQCYEELIGSVVEAMNGRSKQQWDAAKQDYYGNHSSIVRDSLVSGNSVVDPLNQMANQNNAICLENIGSSSTNQLNDGAPTFIHNGAEISAMDTWMNYDGKILMDQTKLQSGFANSSFNSLDELVNALSKQDQDQSIQINEEFGFDAQSLGSSCI 706
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3670474 3674849 - ClCG11G003560.1 Cla11g00324 284146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla11g00324 706 Gene3D - 206 280 - -
Cla11g00324 706 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 686 IPR045279 GO:0009736
Cla11g00324 706 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 686 - -
Cla11g00324 706 MobiDBLite consensus disorder prediction 141 215 - -
Cla11g00324 706 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 210 263 IPR006447 GO:0003677
Cla11g00324 706 PIRSF RR_ARR_type-B 7 706 IPR017053 GO:0003677|GO:0003700|GO:0009736
Cla11g00324 706 Gene3D - 24 175 - -
Cla11g00324 706 CDD REC_typeB_ARR-like 26 140 - -
Cla11g00324 706 Pfam Response regulator receiver domain 26 134 IPR001789 GO:0000160
Cla11g00324 706 ProSiteProfiles Response regulatory domain profile. 25 140 IPR001789 GO:0000160
Cla11g00324 706 MobiDBLite consensus disorder prediction 149 165 - -
Cla11g00324 706 SUPERFAMILY Homeodomain-like 208 264 IPR009057 -
Cla11g00324 706 SMART REC_2 24 136 IPR001789 GO:0000160
Cla11g00324 706 SUPERFAMILY CheY-like 23 150 IPR011006 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g01213 Cla-Chr6:25304932 Cla11g00324 Cla-Chr11:3670474 0 dispersed
Cla06g01319 Cla-Chr6:26568677 Cla11g00324 Cla-Chr11:3670474 7.39E-56 dispersed
Cla06g01322 Cla-Chr6:26586802 Cla11g00324 Cla-Chr11:3670474 1.73E-62 dispersed
Cla08g01708 Cla-Chr8:29657849 Cla11g00324 Cla-Chr11:3670474 1.82E-72 dispersed
Cla01g00008 Cla-Chr1:70052 Cla11g00324 Cla-Chr11:3670474 3.69E-23 transposed
Cla11g00324 Cla-Chr11:3670474 Cla05g01695 Cla-Chr5:28690664 1.68E-137 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62003 PF00072 Response_reg 1.60E-25 CL0304 Cla TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla11g00324 K14491 - csv:101203718 1194.1