Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla11g00329 ATGTCAAACATGGGGAAACTCTTTCAAGAATGGAGACAAGCTGCAGAAGTAGAAGCAAGAAGCTCAAAAAAACAAGTCTTGATTTTGACATCAGCAGTTCAATACAAGCCAGATTTGGAAAATGGGTCATCTTTTCCAGTGGATTCCATAAGGAATAATTTGAATTGGGTAAATATTTTGGCTTATGATTATTACATGCCAAATTGGGCAAATTTTACAGCTCCTTTTGCAGCTTTATATGATCCAAAATTAGGAGCAAATACAGATAGTGGAATTGGGAAATGGATTGAAAAAGGATTACCAGCTGCTAATATTCTTTTGGCTTTACCATTTTATGGATATGCTTGGAGGCTTAAAAATGTTGAGAATTTTGGTGTTGGGGCAGCAGCAATTGGGGCAGCAATTAATAATGATGGGTCAATTAGTTATAAGAATATAAAGGAATTTATGGAGAGAAATGGGGTTGATGAAGTGAAGTTTAATGGAAGTTATGTGATGAGTTATTGTGTGGTTGGATCTACTTGGATTGCTTTTGATGATGCTGAGGTTGTTAAAATTAAGGTTTCTTATGTTAAACAAAGGAGGTTGCTTGGTTACTTTGTTTGGTTGGTGTCTTATGATGACAATTGGGAGCTCTCTTCTGTTGCAGCAAGAGAGTTTGGCAATGAGAAAGAGAAGAAGGTATCATTGCTGATAATCATCCCAAGTACAATTGGTGCAGCCATATTATTACTACTACTAGGATTTTTGTTGTTTAGAAGACTCAAATCCAAAGGAAGAAGATCAAAATTCAATGTAAAAAATCTTGTTGGTGGAGAAGATTTTGGTAGCAATGCACCTGATTTGCAAGTTTTTAGCTTTGATGAGATTGAAAAAGCTACCAATAAGTTTGCTTTCATGAATAAACTTGGACAAGGTGGTTATGGTCCTGTTTATAAGGGTATACTACCAAATGGAAAGGAGATAGCAGTGAAAAGATTGTCAGAAACTTCAGGACAGGGTTTTGAGGAGTTTAAGAATGAAGTTTTGCTCACTGCAAGATTACAACATGTCAATCTTGTGAGAGTTCTTGGATTTTGTGTTGACACTCATCAACATATGTTGGTTTATGAGTACATGCCTAACAAAAGCTTGGACTTCCACCTATTTGAAGGCCTTGGAAGAGGGAATTTGTTGAATTGGGCAAAAAGAGTGGAGATCATTGAAGGGGTAACTCAAGGACTTCTTTACCTACAAGAATACTCAAGATTGACAATCATTCATAGGGATTTGAAGCCTAGCAATATTTTGTTGGATGATGGAATGAAACCGAAAATCTCAGATTTTGGCATGGCTAGAATTTTTGCAAAAGATGAACTTGAAGCAAACACGAGTCGGATTGCGGGAACACATGGTTATATACCTCCTGAGTATGTGAGAAAAGGACTTTATTCTACGAAATCAGATGTATTTAGCTTCGGAGTTCTTCTTCTTCAAATCATAAGTGGCAAGAAGATTACTAAGTTGTATGGAGTGCATGAACATTTGAACCTTCTAGATTATTTCATTAGCATTAGCTTAAGTTGTGGAAAGCCTCCGGACTGGCAAGATTTTGTTGGAATAGTGGTGTTGCTCATTATCAACTCTACCATCAGTTTTATTGAAGAGAACAATGCAGGTAATGCAGCTGCTGCTCTAATGGCAGGACTTGCTCCAAAAACCAAGATAATTGACCTTTGTGACCTCAAAGGGGAGATAAGGAAGAAGGCTCATGATATTATCAGTAATTATGCAGATCGTGATCTTCGTTCTCTAGCCGTCGCTCGTCAGACTGTTCTAGAGAAAACCAAAGAGAGTGCTGGAGAGCCATGGGACTTTGTGGGCTTGTTGCCCCTCTTTGATCCTCCAAGGCATGATAGTGCAGAGACTATTCGTCAAGCACTCGAACTCGGGGTAAATGTTAAGATGATCACTGGAGATCAATTGGCCATTGGAAAAGAGACCGGTCGTAGGCTCGGTATGGGCACCAATATGTATCCATCATCTTCCTTACTTGGTCAAAGCAAGGATGAATCCATTGCTAGCATTCCTGTTGATGAACTTATTGAGAAGGCAGATGGGTTTGCTGGTGTCTTCCCAGAACACAAGTATGAGATAGTGAAAAAGCTCCAAGAGAGGAAACACATTTGTGGGATGACTGGTGACGGTGTTAACGATGCCCCTGCACTCAAGAAGGCCGACATTGGAATTGCTGTAGCTGATGCAACTGATGCAGCAAGGAGTGCATCAGACATTGTTTTAACAGAACCAGGTCTCAGTGTAATCGTGAGTGCAGTTCTAACAACTCTGATATGGAAGTTTGACTTCTCACCTTTCATGGTCTTGATTGTTGCCATCTTGAATGATGGAACCATCATGACCATCTCCAAGGATAGAGTGAAGCCATCTCCTATGCCTGATTCATGGAAGCTAAACGAAATTTTCGCCACCGATGTTGTTCTCGGAACGTACATGGCTATCATGACTGTGGTCTTCTTCTGGCTAACATATCAGACTGATTTCTTTCCAAAAACATTTGGGGTGAAGCAAATCAGTGAAAATCTAGCTGAGCTTAACTCTGCTCTTTACCTCCAAGTGAGCATCATTAGCCAAGCCCTCATCTTCGTGACGCGATCAAGGAGTTGGTCCTTTGTAGAGCGCCCTGGTGTTTTGCTAGTTGGAGCCTTCCTAATAGCTCAGCTGTTGGCAACCGTCATCGCCGTGTATTCCAAATGGGACTTTGCTAGAATTCATGGCATTCGTTGGGGATGGGCAGGAACTGCATTCACAACTAAGAAGGATTATGGAAAAGGAGAAAGGGAGGCACAATGGGCATCAGCACAACGTACACTTCACGGCTTACAGAAACCAGAAGCGCTATTTAACGACACGAGTAGCTACCGAGAGCTTTCCGAGATCGCAGAACAAGCAAAGAGAAGAGCTGAAGTTGCCAGTAAAACTTTGTGTTTCTTACAGGATGAGTCAGAATGTATAATTAGCACACATTTGGAAGCTCAGAAAACTCCACAAGTCAGGTTGAACCAGTAG 3066 40.57 MSNMGKLFQEWRQAAEVEARSSKKQVLILTSAVQYKPDLENGSSFPVDSIRNNLNWVNILAYDYYMPNWANFTAPFAALYDPKLGANTDSGIGKWIEKGLPAANILLALPFYGYAWRLKNVENFGVGAAAIGAAINNDGSISYKNIKEFMERNGVDEVKFNGSYVMSYCVVGSTWIAFDDAEVVKIKVSYVKQRRLLGYFVWLVSYDDNWELSSVAAREFGNEKEKKVSLLIIIPSTIGAAILLLLLGFLLFRRLKSKGRRSKFNVKNLVGGEDFGSNAPDLQVFSFDEIEKATNKFAFMNKLGQGGYGPVYKGILPNGKEIAVKRLSETSGQGFEEFKNEVLLTARLQHVNLVRVLGFCVDTHQHMLVYEYMPNKSLDFHLFEGLGRGNLLNWAKRVEIIEGVTQGLLYLQEYSRLTIIHRDLKPSNILLDDGMKPKISDFGMARIFAKDELEANTSRIAGTHGYIPPEYVRKGLYSTKSDVFSFGVLLLQIISGKKITKLYGVHEHLNLLDYFISISLSCGKPPDWQDFVGIVVLLIINSTISFIEENNAGNAAAALMAGLAPKTKIIDLCDLKGEIRKKAHDIISNYADRDLRSLAVARQTVLEKTKESAGEPWDFVGLLPLFDPPRHDSAETIRQALELGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSSLLGQSKDESIASIPVDELIEKADGFAGVFPEHKYEIVKKLQERKHICGMTGDGVNDAPALKKADIGIAVADATDAARSASDIVLTEPGLSVIVSAVLTTLIWKFDFSPFMVLIVAILNDGTIMTISKDRVKPSPMPDSWKLNEIFATDVVLGTYMAIMTVVFFWLTYQTDFFPKTFGVKQISENLAELNSALYLQVSIISQALIFVTRSRSWSFVERPGVLLVGAFLIAQLLATVIAVYSKWDFARIHGIRWGWAGTAFTTKKDYGKGEREAQWASAQRTLHGLQKPEALFNDTSSYRELSEIAEQAKRRAEVASKTLCFLQDESECIISTHLEAQKTPQVRLNQ 1021
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3739688 3752651 + ClCG11G003605.1 Cla11g00329 284151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla11g00329 1021 Gene3D - 111 178 IPR029070 -
Cla11g00329 1021 Coils Coil 973 993 - -
Cla11g00329 1021 Gene3D Phosphorylase Kinase; domain 1 273 372 - -
Cla11g00329 1021 PRINTS H+-transporting ATPase (proton pump) signature 583 601 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cla11g00329 1021 PRINTS H+-transporting ATPase (proton pump) signature 726 742 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cla11g00329 1021 PRINTS H+-transporting ATPase (proton pump) signature 698 714 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cla11g00329 1021 PRINTS H+-transporting ATPase (proton pump) signature 757 782 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cla11g00329 1021 SUPERFAMILY (Trans)glycosidases 2 223 IPR017853 -
Cla11g00329 1021 Gene3D - 569 626 IPR023299 GO:0000166
Cla11g00329 1021 PANTHER CALCIUM-TRANSPORTING ATPASE 568 775 - -
Cla11g00329 1021 SUPERFAMILY Chitinase insertion domain 112 178 IPR029070 -
Cla11g00329 1021 Pfam haloacid dehalogenase-like hydrolase 619 740 - -
Cla11g00329 1021 PANTHER CALCIUM-TRANSPORTING ATPASE 773 933 - -
Cla11g00329 1021 PANTHER CALCIUM-TRANSPORTING ATPASE 516 570 - -
Cla11g00329 1021 SMART 2g34 1 207 IPR011583 GO:0008061
Cla11g00329 1021 Gene3D Transferase(Phosphotransferase) domain 1 373 530 - -
Cla11g00329 1021 SMART serkin_6 297 587 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla11g00329 1021 PRINTS P-type cation-transporting ATPase superfamily signature 726 745 - -
Cla11g00329 1021 PRINTS P-type cation-transporting ATPase superfamily signature 643 653 - -
Cla11g00329 1021 PRINTS P-type cation-transporting ATPase superfamily signature 621 632 - -
Cla11g00329 1021 PRINTS P-type cation-transporting ATPase superfamily signature 749 761 - -
Cla11g00329 1021 PANTHER CALCIUM-TRANSPORTING ATPASE 933 1001 - -
Cla11g00329 1021 ProSiteProfiles Protein kinase domain profile. 297 618 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla11g00329 1021 ProSitePatterns Serine/Threonine protein kinases active-site signature. 419 431 IPR008271 GO:0004672|GO:0006468
Cla11g00329 1021 Gene3D - 774 938 - -
Cla11g00329 1021 Gene3D - 764 773 - -
Cla11g00329 1021 Gene3D - 531 564 - -
Cla11g00329 1021 SUPERFAMILY Protein kinase-like (PK-like) 278 511 IPR011009 -
Cla11g00329 1021 Pfam Glycosyl hydrolases family 18 2 207 IPR001223 GO:0005975
Cla11g00329 1021 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 569 632 IPR023299 GO:0000166
Cla11g00329 1021 ProSiteProfiles Glycosyl hydrolases family 18 (GH18) domain profile. 1 223 IPR001223 GO:0005975
Cla11g00329 1021 Gene3D - 971 993 - -
Cla11g00329 1021 Pfam Protein kinase domain 299 501 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla11g00329 1021 PANTHER PLASMA MEMBRANE ATPASE 773 933 - -
Cla11g00329 1021 PANTHER PLASMA MEMBRANE ATPASE 933 1001 - -
Cla11g00329 1021 PANTHER PLASMA MEMBRANE ATPASE 516 570 - -
Cla11g00329 1021 SUPERFAMILY Calcium ATPase, transmembrane domain M 768 934 IPR023298 -
Cla11g00329 1021 SUPERFAMILY HAD-like 619 772 IPR036412 -
Cla11g00329 1021 PANTHER PLASMA MEMBRANE ATPASE 568 775 - -
Cla11g00329 1021 Gene3D - 627 763 IPR023214 -
Cla11g00329 1021 SUPERFAMILY Calcium ATPase, transmembrane domain M 519 565 IPR023298 -
Cla11g00329 1021 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 701 773 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cla11g00329 1021 Gene3D Glycosidases 2 209 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla11g00327 Cla-Chr11:3721123 Cla11g00329 Cla-Chr11:3739688 2.11E-28 dispersed
Cla11g00329 Cla-Chr11:3739688 Cla11g01171 Cla-Chr11:24491447 1.51E-08 dispersed
Cla11g00328 Cla-Chr11:3728561 Cla11g00329 Cla-Chr11:3739688 3.60E-37 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80920 PF00069 Pkinase 6.20E-42 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla11g00329 K01535 - cmax:111465441 848.966