Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla11g00330 ATGGGGGTTTTTAGATGCTTGTGTTTCAATCTTCTTCTGTTTTTGTTGCTTTGTGTTGCGGCTTCTTCTACTGATCGTTACTCTGAAGCACTTTTAAACTTGAAATCTGAATTTGTTGATGATTTTGGGAGTTTGAGTGATTGGATTGTGGGTTCTGGAGAGAACCCATTTGGGAAAATCCATGGCTGTTCTTGGTCAGGAATCAAATGCGACAAGAATTCCACCATTGTTATTGGAATCGACCTCTCGATGAAGAAGCTTGGTGGGGAGATTTCTGGTGAGCAGTTTCATGTTTTTAAAGAGCTTGTTGATCTTAACTTAAGTCACAATTATTTGTCTGGGAAACTTCCTGTTGGAATCTTCAATCTCACTAATCTAAGAAGTTTGGATATCAGTAGGAACAATTTTTCTGGTCATTTTCCTCTTGGGATTTCTGGTCTTCAAAACTTGGTTGTTCTTGATGCTTTTAGCAATAGTTTTTCTGGGTCATTGCCTGTTGATCTTTCTGAGCTTGAAAATCTGAAGTTTCTAAACTTTGCTGGGAGTTACTTCAAAGGGCCAATCCCTTCAGAATATGGTTCTTTCAAAAAACTTGAGTTCATTCATCTTGCTGGGAATTTTCTTAGTGGAAACTTACCTCCTGAATTGGGCAAACTCAAAACTGTAACTCATATGGAGATTGGCTACAATAGTTTCCAGGGAAATCTCCCATGGGAATTAGGCAACATGAGTAACCTTCAATATCTTGATATTGCAAGTGGAAATCTCTCTGGTTCAATTCCTAAAGAATTTAGTAATCTCACAAAGCTTGAGTCTCTTTTCCTTTTCAGAAACCAGCTATCCGGGTTCTTGCCTGAGGAACTAAGCAATATCACTTCTCTTGTTAATTTAGATCTTTCTGATAACCATATTTCTGGTCCTATTCCAGAGAGCTTTTCAGAGTTGAAGAATCTTAGACTGCTCAGTGTTATGTACAATGAAATGACTGGTTCTGTTCCAAAAGGCATTGGAGAGCTTCCTTCATTGGAGACTCTTCTTATATGGAGCAATCAGTTTTCTGGGTCACTCCCAAACAACTTGGGTAGCAACAAAAAGCTTAAATGGGTTGATGTTTCCACAAACAATTTTGTGGGTGTCATCCCACCAAATATCTGCCAAGGAGGTTTACTTTATAAGTTGATCCTGTTTTCAAATAAGTTTAGTGGTGGACTTTCCCCATCCCTCTCTAATTGTTCTTCCCTTGTTCGATTGCGGCTAGAGGATAATACGTTTTCAGGTGATATTGCTCTGAAATTTAGTGATCTTCCTGATATCTCATACATAGATATCTCTAGAAACAATTTCAGTGGTGGAGTTCCTTTAGATTTAAACAAAGCATCCAACCTTCAATACTTGAATATCTCTCATAACCCACAACTGGGAGGTGTTTTTCCTGCAGAAACATGGACTTTACCCCTTCTTCAAAACTTTTCAGCCTCTGATTGTGGCATAAGAGGAAACCTTCCCAACTTCCAGCTCTGCAAATCCATTTCTACTATTGAATTGAATAATAACGAACTATCAGGTAAAGTCCCAGAAAGCATTGCAAGTTGTCAGGCTCTTGTAAGGATGGATTTGTCTTACAACAATCTCTCAGGTCATATACCCGAAGAACTTGCACATCTTCCTTCTATTAGCATCCTTGATCTATCTCACAATGGTTTCAATGGAACGATACCTGAAAAGTTCAGGGATTCGTCGAGCTTGCTTCTACTAAATGTGTCTTCCAATGATATCTCTGGTTCCATCCCGGAAAAAGAAGTGTTTCGATCAATGGGCAGCAGTGCTTTTGCTGGAAATCCAAAGCTATGTGGAGCACCTTTGAGACCATGTTCAGGTTCATTGGCAATGCTTGGAGGCAAAGGGATGGGGAAGCTTATACTCATCCTGATACTATGTGCAGGTCTTGCTATAATCACGACGATATCAATTGTGTGGCTTTTCTTCGTCCGAAGAGGGAGCAAAGGTAAATGGAAGATGGTTTCATTCACCGGACTTCCTCCATTCACAGCTAATGATATTCTCAGGAGTTTCGACTCTACGGAATCTAAGGAAGCGATATTGCCATTGTCTGCTTCGATTTTCAAAGCAGTTCTGCCCACTGGAATCACGGTGTCGATAAAGAAGATAGACTGGGAAGCAAAAAGAATGAAGACGATATCGGAGTTTATAACTCAATTAGGTAGTTTGAGGCACAAGAATTTGGTCAGATTGCTGGGATTCTGCCACAACAAACAGATGGTTTATCTTTTGTATGATTACTTGCCCAATGGAAATCTAGCAGAGAAAATTTCAATGAAAAGGGAATGGCCAACTAAACTCAAACTCATTATAGGTATAGCAAGGGGAATACACTTCCTTCACCATGACTGTTATCCTCCAATTCCCCATGGAGACTTGAAGTCAAGTAACATCATTTTCGACGAAAATATGGAACCCCGTCTGGCTGAATTCGGACTCCGGTTTCTACAACAACTAAACGAAGATCCGCTTCCATTATCGTCTACAACGAAAGAAGGAGATAAATTCAATAATGCAACAGAGGAGGAGCTGTGGATGGATGTTCATAGTTTTGGGGAGATCATCCTGGAAATTATAAGCAACGGTCGATTAACGACCGCTGGATCGAGCACACAGAACAAGGCAAGAGATCTTCTGTTAAGAGAAATATACAAAGAAAATGGGATTAGGTCTCCCAATTCATCACAAGAGGAGATAAAACAGGTTCTTGATCTAGCTTTGCTATGCACAAGGAGCAGGCCATCCAACAGACCATCCATGGAAGATATCTTAAAGCTGTTATCAGAAATAAAACCAGAGAGGAAGAACCCTAATCGACACGCAGAAATGTCGGGCTGGGATGAAGGAGGAATCTACTACAGCGACCAAGCGCAGTCCCTTGGTGACGGAACCGGCATCGGCCGAAGCGGAGATGCCGACGACAAGGCCACTCATCACTCGGTCCTTCGCAAATTCAAGGAGTTCATCCGTGGATTTGAAGCCGACAAGAATGTTTTCCCTTACAGAGAGAGCCTTCTCCACAATCCCAAGTTTCTTCGCGTTGATATGGAGGACGTTAACGCTTTTGACTCCGATCTTCCGGCGAAGCTTCGATCTGCTCCTGCCGATTTCTTGCCCTTGTTTGAGACTGCTGCAGGGGAGGTTTTAATGAATCTGAAGACGAAGGTGGCTGGTGAGACTGGAGAAATGGTGGAGCCCGTGCCTGGGGATGTTCAAATTCTGCTAACGTCGAAGGAGGATCCCGTCTCAATGCGGTCCCTTGGGGCACAGTACATTTCAAAACTTGTTAAAATATCTGGAATCACAATAGCTGCGTCAAGGACCAAGGCAAAGGCAACATATGTGACCTTAATTTGTAAAAACTGTAGAAGTACAACACGAGTTCCGTGTCGGCCAGGACTTGGAGGTGCAATTGTCCCTCGGTCATGTAATCATATTCCTCAGGCGGGAGAAGAACCATGCCCACTGGACCCCTGGATTGTGGTTCCTGACAAAAGTATGTATGTTGATCAACAGACTCTAAAACTGCAGGAAAACCCAGAAGATGTCCCAACTGGGGAACTTCCTAGGAACATGCTTCTATCAGTAGATCGCCATCTTGTCCAAACAATTGTCCCAGGCACTAGATTGACCATCATGGGGATATACAGTATCTACCAAGCTGCCAATTCTTCTGCATCCCACAAAGGAGCAGTTGCAATCAGGCAGCCTTATATCAGGGTTGTAGGCATTGAAGAATGTAATGAAGCTAACTCTCGGGGCCCTGCATCCTTCACAACAGAAGATATAGAAGAGTTCAAAAAATTTGCAGCAGAGCCTGATGTCTATAAAAGCATATGTTCAAAGATTGCCCCCTCTATATTTGGTCATGATGATGTGAAGAAGGCCGTGGCTTGTCTTCTATTTGGAGGATCCAGGAAGAATTTGCCAGATGGGGTTAAGTTAAGAGGTGACATTAATGTATTGCTCTTGGGGGACCCGTCTACAGCTAAATCCCAGTTTCTCAAGTTTGTTGAGAAAACAGCTCCAGTTGCTGTTTATACTTCTGGAAAAGGTTCATCGGCTGCTGGTCTCACAGCTTCAGTGATACGAGATAGCAGCTCCCGAGAGTTTTATCTTGAAGGAGGTGCAATGGTTTTGGCTGATGGAGGTGTTGTCTGCATTGATGAGTTTGACAAAATGAGATCAGAGGATAGAGTTGCTATTCATGAAGCAATGGAACAACAGACAATATCAATTGCCAAAGCCGGAATTACAACGGTTCTTAATTCCAGAACCTCAGTGCTTGCTGCTGCTAATCCTCCATCGGGACGTTATGATGATCTTAAGACAGCACAGGATAACATCGATTTGCAGACAACAATTCTCTCCAGATTTGATTTAATTTTCATCGTTAAAGATATAAGGATGTACAGTCAAGATAAGATTATAGCAAGCCACATAATAAAAGTTCATGCATCTGCTGATGCAACCTTGGGTGAACATAGAGCTTCTAAAGAAGAGAATTGGCTAAAGAGGTATATTCAATATTGTCGAACTCAATGTTATCCCCGTTTGTCAGAATCTGCATCTATAATGCTGCAGAATAACTATGTTAAAATCAGACAGGACATGAGACAACAAGCAAACGAAACAGGGGAGGCTGCTGCAATTCCAATTACTGTAAGGCAGCTGGAAGCTATTGTAAGATTAAGCGAGGCACTTGCAAAAATGAAGTTGTCCCACGTTGCCACTGAGGAAAATGTGCAGGAAGCTATTAGACTTTTTACTGTGTCGACGATGGACGCAGCACGCTCTGGGATTCATCAGCAAGTAAATCTGACTCCTGAAATTGCTAATGAAATAAAGCAAGCAGAAACACAGATAAAGAGAAGAATAGGAATTGGCAACCACATATCTGAGAGAAGGCTGATTGACGAGCTCACCAAAATGGGGATGAACGAGTCAATTGTGAGAAGAGCTCTGATTATTATGCACCAGAGAGATGAAGTTGAATATAAAAGAGAAAGGCGTGTCATTTTTCGCAAGGCATGA 5094 41.95 MGVFRCLCFNLLLFLLLCVAASSTDRYSEALLNLKSEFVDDFGSLSDWIVGSGENPFGKIHGCSWSGIKCDKNSTIVIGIDLSMKKLGGEISGEQFHVFKELVDLNLSHNYLSGKLPVGIFNLTNLRSLDISRNNFSGHFPLGISGLQNLVVLDAFSNSFSGSLPVDLSELENLKFLNFAGSYFKGPIPSEYGSFKKLEFIHLAGNFLSGNLPPELGKLKTVTHMEIGYNSFQGNLPWELGNMSNLQYLDIASGNLSGSIPKEFSNLTKLESLFLFRNQLSGFLPEELSNITSLVNLDLSDNHISGPIPESFSELKNLRLLSVMYNEMTGSVPKGIGELPSLETLLIWSNQFSGSLPNNLGSNKKLKWVDVSTNNFVGVIPPNICQGGLLYKLILFSNKFSGGLSPSLSNCSSLVRLRLEDNTFSGDIALKFSDLPDISYIDISRNNFSGGVPLDLNKASNLQYLNISHNPQLGGVFPAETWTLPLLQNFSASDCGIRGNLPNFQLCKSISTIELNNNELSGKVPESIASCQALVRMDLSYNNLSGHIPEELAHLPSISILDLSHNGFNGTIPEKFRDSSSLLLLNVSSNDISGSIPEKEVFRSMGSSAFAGNPKLCGAPLRPCSGSLAMLGGKGMGKLILILILCAGLAIITTISIVWLFFVRRGSKGKWKMVSFTGLPPFTANDILRSFDSTESKEAILPLSASIFKAVLPTGITVSIKKIDWEAKRMKTISEFITQLGSLRHKNLVRLLGFCHNKQMVYLLYDYLPNGNLAEKISMKREWPTKLKLIIGIARGIHFLHHDCYPPIPHGDLKSSNIIFDENMEPRLAEFGLRFLQQLNEDPLPLSSTTKEGDKFNNATEEELWMDVHSFGEIILEIISNGRLTTAGSSTQNKARDLLLREIYKENGIRSPNSSQEEIKQVLDLALLCTRSRPSNRPSMEDILKLLSEIKPERKNPNRHAEMSGWDEGGIYYSDQAQSLGDGTGIGRSGDADDKATHHSVLRKFKEFIRGFEADKNVFPYRESLLHNPKFLRVDMEDVNAFDSDLPAKLRSAPADFLPLFETAAGEVLMNLKTKVAGETGEMVEPVPGDVQILLTSKEDPVSMRSLGAQYISKLVKISGITIAASRTKAKATYVTLICKNCRSTTRVPCRPGLGGAIVPRSCNHIPQAGEEPCPLDPWIVVPDKSMYVDQQTLKLQENPEDVPTGELPRNMLLSVDRHLVQTIVPGTRLTIMGIYSIYQAANSSASHKGAVAIRQPYIRVVGIEECNEANSRGPASFTTEDIEEFKKFAAEPDVYKSICSKIAPSIFGHDDVKKAVACLLFGGSRKNLPDGVKLRGDINVLLLGDPSTAKSQFLKFVEKTAPVAVYTSGKGSSAAGLTASVIRDSSSREFYLEGGAMVLADGGVVCIDEFDKMRSEDRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPPSGRYDDLKTAQDNIDLQTTILSRFDLIFIVKDIRMYSQDKIIASHIIKVHASADATLGEHRASKEENWLKRYIQYCRTQCYPRLSESASIMLQNNYVKIRQDMRQQANETGEAAAIPITVRQLEAIVRLSEALAKMKLSHVATEENVQEAIRLFTVSTMDAARSGIHQQVNLTPEIANEIKQAETQIKRRIGIGNHISERRLIDELTKMGMNESIVRRALIIMHQRDEVEYKRERRVIFRKA 1697
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3754092 3764402 - ClCG11G003620.1 Cla11g00330 284152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla11g00330 1697 ProSiteProfiles Protein kinase domain profile. 671 963 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla11g00330 1697 SUPERFAMILY RNI-like 80 426 - -
Cla11g00330 1697 Gene3D Phosphorylase Kinase; domain 1 690 767 - -
Cla11g00330 1697 Pfam MCM N-terminal domain 1003 1074 IPR027925 -
Cla11g00330 1697 Pfam Protein tyrosine and serine/threonine kinase 714 946 IPR001245 GO:0004672|GO:0006468
Cla11g00330 1697 SUPERFAMILY L domain-like 380 624 - -
Cla11g00330 1697 Pfam MCM P-loop domain 1282 1505 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cla11g00330 1697 Gene3D Ribonuclease Inhibitor 184 282 IPR032675 -
Cla11g00330 1697 Gene3D Ribonuclease Inhibitor 283 388 IPR032675 -
Cla11g00330 1697 PRINTS Mini-chromosome maintenance (MCM) protein family signature 1336 1351 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cla11g00330 1697 PRINTS Mini-chromosome maintenance (MCM) protein family signature 1475 1483 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cla11g00330 1697 PRINTS Mini-chromosome maintenance (MCM) protein family signature 1396 1410 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cla11g00330 1697 PRINTS Mini-chromosome maintenance (MCM) protein family signature 1424 1437 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cla11g00330 1697 PRINTS Mini-chromosome maintenance (MCM) protein family signature 1448 1460 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cla11g00330 1697 Gene3D - 1276 1630 IPR027417 -
Cla11g00330 1697 Gene3D Transferase(Phosphotransferase) domain 1 768 965 - -
Cla11g00330 1697 Pfam Leucine rich repeat 510 567 IPR001611 GO:0005515
Cla11g00330 1697 Pfam Leucine rich repeat 244 304 IPR001611 GO:0005515
Cla11g00330 1697 Gene3D Ribonuclease Inhibitor 24 183 IPR032675 -
Cla11g00330 1697 SMART mcm 1100 1614 IPR031327 GO:0003677|GO:0005524|GO:0032508
Cla11g00330 1697 Pfam Leucine rich repeat N-terminal domain 29 71 IPR013210 -
Cla11g00330 1697 SUPERFAMILY Nucleic acid-binding proteins 1004 1261 IPR012340 -
Cla11g00330 1697 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE 2 954 - -
Cla11g00330 1697 SMART serkin_6 697 951 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla11g00330 1697 Gene3D Ribonuclease Inhibitor 389 627 IPR032675 -
Cla11g00330 1697 Gene3D - 1104 1239 IPR012340 -
Cla11g00330 1697 Gene3D - 993 1084 - -
Cla11g00330 1697 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1305 1613 IPR027417 -
Cla11g00330 1697 SMART LRR_typ_2 267 290 IPR003591 -
Cla11g00330 1697 SMART LRR_typ_2 123 147 IPR003591 -
Cla11g00330 1697 SMART LRR_typ_2 339 363 IPR003591 -
Cla11g00330 1697 SMART LRR_typ_2 291 314 IPR003591 -
Cla11g00330 1697 SMART LRR_typ_2 555 578 IPR003591 -
Cla11g00330 1697 PANTHER UNNAMED PRODUCT 2 954 - -
Cla11g00330 1697 ProSitePatterns Serine/Threonine protein kinases active-site signature. 808 820 IPR008271 GO:0004672|GO:0006468
Cla11g00330 1697 Gene3D - 1131 1189 - -
Cla11g00330 1697 SUPERFAMILY Protein kinase-like (PK-like) 705 947 IPR011009 -
Cla11g00330 1697 ProSiteProfiles MCM family domain profile. 1295 1501 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cla11g00330 1697 Pfam MCM AAA-lid domain 1523 1612 IPR041562 -
Cla11g00330 1697 Pfam MCM OB domain 1104 1239 IPR033762 -
Cla11g00330 1697 ProSitePatterns MCM family signature. 1404 1412 IPR018525 GO:0003677|GO:0005524|GO:0006260
Cla11g00330 1697 CDD MCM5 1299 1612 - -
Cla11g00330 1697 PRINTS Mini-chromosome maintenance (MCM) protein 5 signature 1531 1546 IPR008048 GO:0003688|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Cla11g00330 1697 PRINTS Mini-chromosome maintenance (MCM) protein 5 signature 1607 1624 IPR008048 GO:0003688|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Cla11g00330 1697 PRINTS Mini-chromosome maintenance (MCM) protein 5 signature 1255 1267 IPR008048 GO:0003688|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Cla11g00330 1697 PRINTS Mini-chromosome maintenance (MCM) protein 5 signature 1131 1143 IPR008048 GO:0003688|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Cla11g00330 1697 PRINTS Mini-chromosome maintenance (MCM) protein 5 signature 1105 1120 IPR008048 GO:0003688|GO:0005524|GO:0005634|GO:0006270|GO:0042555
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla07g01604 Cla-Chr7:33359458 Cla11g00330 Cla-Chr11:3754092 0 dispersed
Cla10g01241 Cla-Chr10:27181452 Cla11g00330 Cla-Chr11:3754092 2.14E-100 dispersed
Cla10g01954 Cla-Chr10:35371168 Cla11g00330 Cla-Chr11:3754092 3.96E-76 dispersed
Cla11g00330 Cla-Chr11:3754092 Cla10g00776 Cla-Chr10:14753611 6.34E-156 dispersed
Cla11g00330 Cla-Chr11:3754092 Cla01g01760 Cla-Chr1:32501800 1.56E-153 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80921 PF07714 PK_Tyr_Ser-Thr 1.60E-22 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla11g00330 - K02209 csv:101212061 1714.12