Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla11g00341 ATGTCTTGGATGGAAAAATCTGAAAAATCTGAAAATGTCTTGGAAAGACAGCACCAAGAAGCATTAAGACGAGCAATCTCAAATCGATCCCTCCAAGCAGTGACTTTTCATGAAAAACGCGCCGAAGTGAACTTTGCTGTTGTGAAGAAAACTGCTTACCAAGACTCATACCAAGAAGCGTACTATGGCCCTGTTGTTGAACATGCTGGAGACGCTGCAAGAACTTCTCCCTCTGATCTGGAACAATATCTGATTTCTTCATGTCAAAACCCGCTTGCATCTTTAGAATGTTTGGCATTAGGAATCAGAGATGATGGCCAACAAATCGCCATTCCAACATATCCATGTGATTGGACCTCCTTGCAAGAGGAAATTGCTTCATCAATGGACCCAGCTTCTAGGTCCACTAATGGAGCACTTAATGAGAATTGGAGAGTCACATGGTATGTTGCTACTCATTTGACAAACTTGATGAAACTTTCTTGGCCTCTTTTTATTGGAAAAAGTGGGACCAGTCAGAAAGCAAATGAAATTCTAATGCATAGAACAAAACCATATATGGGAATCCGTTTGCCATCGATTCTTCTTAATGCCAAGCAAATTCTGAAAATGCAAGCTATGTCGGCCAGAAATCAATCTGACGTTCCCAAAGGCCATATTGCAGTTTATGTGGGAGAGATTCAAAGGAAGAGATTTGTAGTCCCTATATCATACTTGAAGCATCCTTCTTTCGTAGATCTGCTTAATAGATCAGAAGAAGAATTTGGATTTTGCCATCCAATGGGTGGCTTGACGATTCCGTGCAGAGAAGATGCTTTCATAAATCTCACTGCTAGGCTGCACACGTCATGA 852 41.2 MSWMEKSEKSENVLERQHQEALRRAISNRSLQAVTFHEKRAEVNFAVVKKTAYQDSYQEAYYGPVVEHAGDAARTSPSDLEQYLISSCQNPLASLECLALGIRDDGQQIAIPTYPCDWTSLQEEIASSMDPASRSTNGALNENWRVTWYVATHLTNLMKLSWPLFIGKSGTSQKANEILMHRTKPYMGIRLPSILLNAKQILKMQAMSARNQSDVPKGHIAVYVGEIQRKRFVVPISYLKHPSFVDLLNRSEEEFGFCHPMGGLTIPCREDAFINLTARLHTS 283
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3861809 3864410 - ClCG11G003720.1 Cla11g00341 284163

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla11g00341 283 Pfam Auxin responsive protein 198 279 IPR003676 GO:0009733
Cla11g00341 283 PANTHER AUXIN-RESPONSIVE PROTEIN SAUR22-LIKE 187 282 - -
Cla11g00341 283 Coils Coil 4 24 - -
Cla11g00341 283 PANTHER SAUR-LIKE AUXIN-RESPONSIVE PROTEIN FAMILY-RELATED 187 282 IPR003676 GO:0009733
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla11g00341 K14488 SAUR; SAUR family protein - csv:105434422 197.593
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00453 Cla-Chr2:4434371 Cla11g00341 Cla-Chr11:3861809 7.33E-33 dispersed
Cla02g00455 Cla-Chr2:4458639 Cla11g00341 Cla-Chr11:3861809 3.26E-28 dispersed
Cla11g00341 Cla-Chr11:3861809 Cla11g00352 Cla-Chr11:3917871 7.82E-29 dispersed
Cla11g00350 Cla-Chr11:3906983 Cla11g00341 Cla-Chr11:3861809 1.67E-34 dispersed
Cla11g00339 Cla-Chr11:3858312 Cla11g00341 Cla-Chr11:3861809 1.52E-65 proximal
Cla11g00340 Cla-Chr11:3858752 Cla11g00341 Cla-Chr11:3861809 7.15E-21 tandem
Cla11g00341 Cla-Chr11:3861809 Cla11g00342 Cla-Chr11:3865195 4.05E-66 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1085 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla11g00341 Cam11g0381 Cec11g0380 . Clacu11g0502 Cmu11g0361 Cre11g0855 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0015789 0 0 0 0 0 0 0 1 0 0 1 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 4
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla11g00341 Cla_Chr11 FPKM 0.0 0.0 0.0 0.798501 0.0 0.0 0.0 0.0 0.0 0.631218