Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla11g00360 ATGGCGGCCGCCACCACTCTCAACCTTCCTTCTCTCTCTTCCTCTTCATCTCTCTCTCATCCCACTCCCTCTCTTCAAACCCCTCTTTCCCTTTCTTCTAAAACCCTCCCAAAATCCCACTTCCCTCATTCCCTCTCCCTTCCCAATACCCACAAGCCCCTCTTCCTCGCCTCCGCCTCCTCCTCCAAATCCCCCATCTCTGATTTCTTCTCCGGCGACGACTATTCCGACGAAAAACCCCGCGAGGAGTGCGGCGTCGTTGGAATCTATGGCGACCCAGAAGCCTCTCGTCTCTGTTATTTAGCCCTTCACGCTCTCCAGCACCGTGGCCAAGAAGGCGCCGGAATCGTCTCCGTCAACGAAAACGTTCTCCAGTCCGTTACCGGCGTCGGCCTCGTCTCTGAAGTCTTCAACCAAACCAAACTCGATCAATTGCCTGGCGATTCTGCGATTGGTCATGTTCGTTACTCCACTGCTGGATCTTCTATGCTCAAGAATGTCCAACCCTTTGTTGCTGGATACCGATTTGGCTCTGTTGGGGTTGCTCATAATGGTAATTTGGTTAATTATCGTTCTCTTAGAGCTAAACTTGAAGACACTGGTTCTATTTTCAATACTAGTTCTGATACTGAGGTCGTTCTTCACCTTATTGCCATTTCTAAACATAGACCTTTCTTGTTGAGGATTGTGGATGCTTGTGAACAGCTTGAAGGAGCTTATTCTATGGTTTTTATTACTGAAGATAAATTGGTTGCTGTTCGTGATCCTTTTGGTTTTAGGCCTTTGGTTATGGGTAGGAGAAGTAATGGGGCTGTTGTATTTGCTTCTGAAACTTGTGCTCTTGATTTAATTGAAGCTACATATGAAAGAGAAGTGTTTCCTGGGGAAGTACTAGTAGTTGATAAGAATGGGATTCAATCTCTCTGTTTAATGGCTCATCCTCAGCCCAAATCTTGCATATTTGAACACATATACTTTGCTCTTCCCAACTCGGTTGTTTTCGGCCGTTCTGTCTACGAATCCCGCCGAGCATTCGGGGAGATACTCGCCACCGAAGCCCCTGTTGATTGTGATGTCGTAATTGCTGTCCCGGATTCAGGGGTAGTGGCTGCTCTTGGTTATGCAGCCAAAGCTGGGGTAGCTTTCCAACAGGGTCTCATAAGGTCTCATTATGTAGGGAGGACATTCATTGAGCCATCACAGAAGATTCGTGACTTCGGTGTGAAGCTGAAGCTGTCGCCGGTTCGAGCAGTGTTGGAAGGGAAGAGAGTAGTGGTTGTGGATGACTCAATTGTTAGAGGTACCACATCTTCAAAGATTGTGAGGCTGTTAAAGGAAGCAGGAGCAAAAGAAGTGCATATGAGGATAGCTAGCCCTCCAATTATAGGGTCATGTTATTATGGAGTGGACACACCAAGTTCTGAAGAACTAATCTCCAACAGGATGAGTGTGGAGGAAATAAGGGAATTTATAGGCTCTGATTCACTTGCTTTTCTGCCATTTGATAGCTTGAAGAAGCTTTTGGGAAGTGATTCTCCAAACTTTTGTTATGCTTGCTTTTCAGGGAACTACCCAGTTGAGCCTAGAGAAATAAAAGTGAAAAGGGTAGGAGATTTTGTGGATGATGGGTTGAATGGAAGCTTGGAATCCATTGATGGAGGTTGGGTTCAAGCTAACAGAAATCAGAATCTTGATAATAATCTCACAGTGGAGAAAGTTGGGGGTCTCTGA 1731 46.04 MAAATTLNLPSLSSSSSLSHPTPSLQTPLSLSSKTLPKSHFPHSLSLPNTHKPLFLASASSSKSPISDFFSGDDYSDEKPREECGVVGIYGDPEASRLCYLALHALQHRGQEGAGIVSVNENVLQSVTGVGLVSEVFNQTKLDQLPGDSAIGHVRYSTAGSSMLKNVQPFVAGYRFGSVGVAHNGNLVNYRSLRAKLEDTGSIFNTSSDTEVVLHLIAISKHRPFLLRIVDACEQLEGAYSMVFITEDKLVAVRDPFGFRPLVMGRRSNGAVVFASETCALDLIEATYEREVFPGEVLVVDKNGIQSLCLMAHPQPKSCIFEHIYFALPNSVVFGRSVYESRRAFGEILATEAPVDCDVVIAVPDSGVVAALGYAAKAGVAFQQGLIRSHYVGRTFIEPSQKIRDFGVKLKLSPVRAVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMRIASPPIIGSCYYGVDTPSSEELISNRMSVEEIREFIGSDSLAFLPFDSLKKLLGSDSPNFCYACFSGNYPVEPREIKVKRVGDFVDDGLNGSLESIDGGWVQANRNQNLDNNLTVEKVGGL 576
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4029492 4031222 + ClCG11G003800.1 Cla11g00360 284182

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla11g00360 576 Hamap Amidophosphoribosyltransferase [purF]. 83 524 IPR005854 GO:0004044|GO:0009113
Cla11g00360 576 ProSiteProfiles Glutamine amidotransferase type 2 domain profile. 84 303 IPR017932 -
Cla11g00360 576 PANTHER AMIDOPHOSPHORIBOSYLTRANSFERASE 2, CHLOROPLASTIC 26 556 - -
Cla11g00360 576 MobiDBLite consensus disorder prediction 1 43 - -
Cla11g00360 576 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 84 525 IPR029055 -
Cla11g00360 576 SUPERFAMILY PRTase-like 319 530 IPR029057 -
Cla11g00360 576 Pfam Glutamine amidotransferase domain 164 281 IPR017932 -
Cla11g00360 576 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 84 307 IPR029055 -
Cla11g00360 576 TIGRFAM purF: amidophosphoribosyltransferase 84 525 IPR005854 GO:0004044|GO:0009113
Cla11g00360 576 CDD PRTases_typeI 346 457 IPR000836 -
Cla11g00360 576 CDD GPATase_N 84 334 IPR035584 -
Cla11g00360 576 Pfam Phosphoribosyl transferase domain 342 453 IPR000836 -
Cla11g00360 576 Gene3D - 343 507 IPR029057 -
Cla11g00360 576 PANTHER AMIDOPHOSPHORIBOSYLTRANSFERASE 26 556 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla11g00360 K00764 purF, PPAT; amidophosphoribosyltransferase [EC:2.4.2.14] - csv:101203840 1016.53
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla11g00360 Cla-Chr11:4029492 Cla11g00923 Cla-Chr11:15911715 1.78E-06 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla01g00375 . 30 180 PRT Gene Family AT1G80050 75.5 6.7e-62 233.8
Cla08g01342 . 33 168 PRT Gene Family AT1G80050 80.9 8.4e-57 216.9
Cla08g01616 . 144 313 PRT Gene Family AT1G80050 62.4 9.7e-53 203.4
Cla10g00278 . 30 202 PRT Gene Family AT1G80050 54.5 5.1e-46 181.0
Cla08g01342 . 1 148 PRT Gene Family AT5G11160 81.1 4.4e-64 241.1
Cla01g00375 . 8 145 PRT Gene Family AT5G11160 75.4 2.2e-55 212.2
Cla08g01616 . 88 260 PRT Gene Family AT5G11160 59.5 2.1e-50 195.7
Cla10g00278 . 8 131 PRT Gene Family AT5G11160 65.2 3.8e-44 174.9
Cla01g00375 . 7 180 PRT Gene Family AT1G27450 74.7 9.6e-73 270.0
Cla08g01616 . 81 316 PRT Gene Family AT1G27450 63.6 8.1e-72 266.9
Cla08g01342 . 11 179 PRT Gene Family AT1G27450 70.6 9.6e-65 243.4
Cla10g00278 . 1 202 PRT Gene Family AT1G27450 53.7 1.5e-54 209.5
Cla11g00360 . 73 557 PRT Gene Family AT2G16570 85.2 6.1e-243 837.0
Cla11g00360 . 73 557 PRT Gene Family AT4G34740 86.0 1.6e-243 839.0
Cla11g00360 . 28 530 PRT Gene Family AT4G38880 70.4 1.7e-199 692.6
Cla01g00375 . 7 180 PRT Gene Family AT1G27450 74.7 9.6e-73 270.0
Cla08g01616 . 81 316 PRT Gene Family AT1G27450 63.6 8.1e-72 266.9
Cla08g01342 . 11 179 PRT Gene Family AT1G27450 70.6 9.6e-65 243.4
Cla10g00278 . 1 202 PRT Gene Family AT1G27450 53.7 1.5e-54 209.5
Cla01g00375 . 30 180 PRT Gene Family AT1G80050 75.5 6.7e-62 233.8
Cla08g01342 . 33 168 PRT Gene Family AT1G80050 80.9 8.4e-57 216.9
Cla08g01616 . 144 313 PRT Gene Family AT1G80050 62.4 9.7e-53 203.4
Cla10g00278 . 30 202 PRT Gene Family AT1G80050 54.5 5.1e-46 181.0
Cla01g00375 . 6 104 PRT Gene Family AT4G22570 82.8 5.4e-44 173.7
Cla10g00278 . 5 95 PRT Gene Family AT4G22570 85.7 1.5e-41 165.6
Cla08g01342 . 11 100 PRT Gene Family AT4G22570 78.9 2.2e-37 151.8
Cla01g00375 . 1 96 PRT Gene Family AT4G12440 84.4 8.7e-41 162.9
Cla10g00278 . 1 95 PRT Gene Family AT4G12440 82.1 1.8e-38 155.2
Cla08g01342 . 4 99 PRT Gene Family AT4G12440 78.1 3.4e-37 151.0
Cla08g01342 . 1 148 PRT Gene Family AT5G11160 81.1 4.4e-64 241.1
Cla01g00375 . 8 145 PRT Gene Family AT5G11160 75.4 2.2e-55 212.2
Cla08g01616 . 88 260 PRT Gene Family AT5G11160 59.5 2.1e-50 195.7
Cla10g00278 . 8 131 PRT Gene Family AT5G11160 65.2 3.8e-44 174.9
Cla08g00735 . 1 186 PRT Gene Family AT1G71750 65.0 1.8e-69 259.2
Cla09g02102 . 95 513 PRT Gene Family AT1G55810 88.8 3.1e-221 764.6
Cla05g01259 . 56 519 PRT Gene Family AT1G55810 73.5 1.5e-199 692.6
Cla09g02102 . 110 522 PRT Gene Family AT3G27440 76.1 1.6e-184 642.5
Cla05g01259 . 117 519 PRT Gene Family AT3G27440 75.4 9.2e-180 626.7
Cla05g01259 . 41 519 PRT Gene Family AT3G27190 86.0 9.4e-245 842.8
Cla09g02102 . 95 512 PRT Gene Family AT3G27190 81.1 3.6e-204 708.0
Cla04g00768 . 3 291 PRT Gene Family AT3G53900 65.4 2.4e-105 379.0
Cla09g02102 . 73 513 PRT Gene Family AT4G26510 84.0 4.9e-222 767.3
Cla05g01259 . 48 519 PRT Gene Family AT4G26510 75.8 7.3e-210 726.9
Cla05g01259 . 45 519 PRT Gene Family AT5G40870 87.0 9.5e-245 842.8
Cla09g02102 . 95 515 PRT Gene Family AT5G40870 79.6 1.2e-202 703.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005155 2 1 2 2 1 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 2 1 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla11g00360 Cla_Chr11 FPKM 13.134875 15.988208 18.22497 17.384804 19.727743 20.537357 20.364086 19.154312 18.61521 17.45719