Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla11g00372 ATGGAGGCCATTCGAAAGCAAGCCACCAAGCTCCGTGAACAGGTCGCTCGCCAGCAACAGGCTGTACTCAAACAGTTTGGTGCCGGAGGATATGGAGGTTCAGATAACATTATTACGGATGAGGCAGAGCTTCATCAACATCAAAAACTAGAAAAGTTGTATATATCAACTCGTGCTGGAAAGCACTTTCAAAGGGACATTGTACGAGGAGTAGAGGGCTATATTGTTACTGGTTCAAAACAAGTCGAAATAGGAACAAAGTTGTCAGAGGATAGCAGGAAATATGGTGCTGAAAATACATGCACCAGTGGCAACACATTATCGAAAGCTGCATTAAATTATGGACGAGCCAGAGCTCAAATGGAGAAAGAGCGTGGAAACATGTTGAAGGCTCTTGGCACTCAGGTAGCAGAGCCATTGAGAGCAATGGTTATGGGCGCTCCTTTGGAGGACGCTCGACATCTTGCTCAACGTTATGACAGAATGCGACAAGAAGCTGAAGCTCAGGCTATTGAGGTTTTCAAGCGACAGGCAAGAGTGAGGGAAACACCAGGCAATGCTGAGATTACTGTGAAGTTGGAAGCTGCCGAAGCAAAATTGCAAGATCTAAAGTCAAATATGGCAACAATGGGAAAGGAAGCTGCAGCAGCCATGGCTGCTGTTGAAGCTCAACAACAAAGGCTAACTCTCCAGCGACTCATTGCCATGGTTGAAGCAGAACGTGCTTATCATCAGAGAGTCCTTCAGATACTTGATCAGCTTGAAGGCGAGATGATATTGGAGCGGCAGAGAATTGAAGCTCCTCCTACACCTCCTCCTCCTGGTCCAAGTGTCGACAATACCATGCCACCTCCCCCATCATATGAAGAAGTCAATGGTGTATTTGCTTCTCAAGCACATAATGGCTCAACAGATTCCATGGGTTACTTTTTGGGGGAGGTTATGCATCCCTACCTAGCCGAGTCAGATGTTGAGCTCAATTTATCAGTTGGTGACTACGTCGTCGTTAGAAAGGTGTCGAACAATGGTTGGGCTGAGGGAGAGTGCAAAGGTAAAGCAGGTTGGTTCCCGTTTGGATACATTGAAAGAAGAGAACGCGTACTTGCAAGTAAGGTTGCTGAGGTGTTTTGA 1131 46.42 MEAIRKQATKLREQVARQQQAVLKQFGAGGYGGSDNIITDEAELHQHQKLEKLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGAENTCTSGNTLSKAALNYGRARAQMEKERGNMLKALGTQVAEPLRAMVMGAPLEDARHLAQRYDRMRQEAEAQAIEVFKRQARVRETPGNAEITVKLEAAEAKLQDLKSNMATMGKEAAAAMAAVEAQQQRLTLQRLIAMVEAERAYHQRVLQILDQLEGEMILERQRIEAPPTPPPPGPSVDNTMPPPPSYEEVNGVFASQAHNGSTDSMGYFLGEVMHPYLAESDVELNLSVGDYVVVRKVSNNGWAEGECKGKAGWFPFGYIERRERVLASKVAEVF 376
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4175359 4182311 + ClCG11G003960.2 Cla11g00372 284194

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla11g00372 376 SMART SH3_2 310 365 IPR001452 GO:0005515
Cla11g00372 376 SUPERFAMILY SH3-domain 268 364 IPR036028 GO:0005515
Cla11g00372 376 Coils Coil 1 21 - -
Cla11g00372 376 Gene3D Arfaptin homology (AH) domain/BAR domain 43 261 IPR027267 -
Cla11g00372 376 PANTHER PROTEIN, PUTATIVE-RELATED 1 376 - -
Cla11g00372 376 Coils Coil 186 213 - -
Cla11g00372 376 Gene3D SH3 Domains 312 364 - -
Cla11g00372 376 SUPERFAMILY BAR/IMD domain-like 47 258 IPR027267 -
Cla11g00372 376 PANTHER SH3 DOMAIN-CONTAINING 1 376 - -
Cla11g00372 376 Coils Coil 220 240 - -
Cla11g00372 376 Pfam Variant SH3 domain 314 362 IPR001452 GO:0005515
Cla11g00372 376 ProSiteProfiles Src homology 3 (SH3) domain profile. 307 366 IPR001452 GO:0005515
Cla11g00372 376 Coils Coil 149 169 - -
Cla11g00372 376 MobiDBLite consensus disorder prediction 266 283 - -
Cla11g00372 376 MobiDBLite consensus disorder prediction 265 284 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla11g00372 - - - bhj:120087629 725.317
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g00676 Cla-Chr3:8181733 Cla11g00372 Cla-Chr11:4175359 5.25E-125 dispersed
Cla11g00372 Cla-Chr11:4175359 Cla11g01581 Cla-Chr11:29513609 8.16E-110 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1042 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla11g00372 Cam11g0417 Cec11g0413 Cco11g0406 Clacu11g0540 Cmu11g0397 Cre11g0884 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007122 2 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 4 1 2 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla11g00372 Cla_Chr11 FPKM 0.463909 0.484597 1.127803 1.160792 1.626624 0.769364 1.530551 1.172454 0.882858 0.946179