Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla11g00377 ATGAAGATCCGTTGTGATGTTTGCGAGAAAGAAGAAGCCTCTGTTTTTTGCCCCTCCGACGAAGCGGCCCTCTGTGCCGCCTGTGACCGCCACGTCCACCGCGCCAACAAGCTCGCCGAGAAACACAACCGTTTCTCTCTCCTCCAATCCACCGCCGCCGCTGCCAATTCACTGCCGTTGTGCGATATCTGCCAGGTCCGGCGAGCGTTTCTGTTCTGTCGCGAAGACAGAGCAATCCTCTGTAGAGAATGCGACATTCCAATTCACATCACCAACGATCGAACCCAGAAGCACACCCGGTTTCTTCTCACCGGCGTGAAGGTCTCGCCGTCGCCGTTGGCTTCTTCTACTTCCTCATCCTCCGTCTCAGGCGGCGGCGAAGAAATTGAAGGCGAAATTGGGTTGTTCAAGAGACGCTCGAGGAAGAGGGCTAAAATGGAGGAATTAGAGAAGCCATTGAATGTTGAAGAAAATGGGGTATCAATAAGCAGTATTTGGGAGTATTTGGAGAGTTTGCCTGGTTGGTGCGTGGAGGAGTTTCTTGATTCTTCATCTACTGCTGATATTTTTCTGTAA 576 51.74 MKIRCDVCEKEEASVFCPSDEAALCAACDRHVHRANKLAEKHNRFSLLQSTAAAANSLPLCDICQVRRAFLFCREDRAILCRECDIPIHITNDRTQKHTRFLLTGVKVSPSPLASSTSSSSVSGGGEEIEGEIGLFKRRSRKRAKMEELEKPLNVEENGVSISSIWEYLESLPGWCVEEFLDSSSTADIFL 191
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4256371 4256946 - ClCG11G004010.1 Cla11g00377 284199

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla11g00377 191 Gene3D Classic Zinc Finger 1 102 - -
Cla11g00377 191 ProSiteProfiles Zinc finger B-box type profile. 56 103 IPR000315 GO:0008270
Cla11g00377 191 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 187 - -
Cla11g00377 191 SMART bboxneu5 4 47 IPR000315 GO:0008270
Cla11g00377 191 SMART bboxneu5 56 103 IPR000315 GO:0008270
Cla11g00377 191 CDD Bbox1_BBX-like 5 47 - -
Cla11g00377 191 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Cla11g00377 191 Pfam B-box zinc finger 58 99 IPR000315 GO:0008270
Cla11g00377 191 Pfam B-box zinc finger 3 44 IPR000315 GO:0008270
Cla11g00377 191 PANTHER B-BOX ZINC FINGER PROTEIN 21 1 187 - -
Cla11g00377 191 CDD Bbox1_BBX-like 60 103 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla11g00377 - - - bhj:120089126 283.108
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cla08g01445 Cla11g00377 CCT
Cla08g01445 Cla11g00377 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla07g00964 Cla-Chr7:25824123 Cla11g00377 Cla-Chr11:4256371 1.51E-36 dispersed
Cla09g01311 Cla-Chr9:20498015 Cla11g00377 Cla-Chr11:4256371 6.73E-48 dispersed
Cla11g00377 Cla-Chr11:4256371 Cla08g01382 Cla-Chr8:26678492 7.80E-06 dispersed
Cla11g00377 Cla-Chr11:4256371 Cla02g00492 Cla-Chr2:4855440 9.25E-63 wgd
Cla11g00377 Cla-Chr11:4256371 Cla08g01445 Cla-Chr8:27322483 2.09E-47 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1041 Blo01g01583 . Bda01g00506 . Bpe02g00365 . . . Cmo05g00289 Cmo12g00380 Cma01g01945 . Car01g01519 Car12g00406 . . Cpe07g00385 Bhi04g00162 . . . . . . Cla08g01445 Cam08g1926 Cec08g1501 Cco08g1638 Clacu08g1616 . Cre08g1403 Cone4ag1948 . Cone17ag1378 Cone20ag0105 . . . Cme03g01907 . Blo18g00789 Bda08g01236 Bda01g01521 Bpe02g01717 Bpe05g00126 Bma01g00739 Bma05g00152 . Cmo01g02006 . Cma12g00429 Cma05g00283 . . Cpe11g00234 Cpe02g00094 . . . . . . . Cla11g00377 Cam11g0424 Cec11g0420 Cco11g0413 Clacu11g0546 Cmu11g0403 Cre11g0890 Lsi08g01348 Csa02g02104 Chy03g01411 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla08g01382 . 37 368 C2C2-CO-like Transcription Factor Family AT5G15850 50.6 1.7e-41 167.2
Cla08g01382 . 32 368 C2C2-CO-like Transcription Factor Family AT5G24930 61.7 3.7e-84 308.9
Cla06g01299 CCT 20 374 C2C2-CO-like Transcription Factor Family AT5G24930 50.8 1.3e-57 220.7
Cla06g01299 CCT 1 374 C2C2-CO-like Transcription Factor Family AT5G57660 50.7 1.8e-67 253.4
Cla08g01382 . 33 368 C2C2-CO-like Transcription Factor Family AT5G57660 51.0 5.1e-54 208.8
Cla02g00307 . 1 407 C2C2-CO-like Transcription Factor Family AT3G07650 54.5 1.8e-89 326.6
Cla02g00307 . 1 407 C2C2-CO-like Transcription Factor Family AT5G48250 55.3 1.8e-86 316.6
Cla02g00307 . 1 407 C2C2-CO-like Transcription Factor Family AT5G48250 55.3 1.8e-86 316.6
Cla02g00492 . 1 208 C2C2-CO-like Transcription Factor Family AT1G75540 54.7 8.4e-51 198.0
Cla11g00377 CCT,ECH 1 184 C2C2-CO-like Transcription Factor Family AT1G75540 52.5 8.4e-43 171.4
Cla07g00964 . 1 298 C2C2-CO-like Transcription Factor Family AT1G78600 50.6 1.9e-76 283.1
Cla01g01962 . 1 107 C2C2-CO-like Transcription Factor Family AT2G21320 81.3 5.9e-48 187.6
Cla01g01962 . 1 114 C2C2-CO-like Transcription Factor Family AT4G38960 79.1 5.7e-49 191.0
Cla02g00492 . 1 198 C2C2-CO-like Transcription Factor Family AT4G39070 60.4 8.3e-56 214.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000846 4 5 1 2 4 3 4 3 3 3 3 3 4 3 3 4 3 2 4 3 3 3 3 4 3 3 2 3 2 0 90
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62005 PF00643 zf-B_box 1.60E-06 No_clan Cla TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla11g00377 Cla_Chr11 FPKM 4.506254 5.091109 1.116118 1.152779 2.471553 2.162349 2.272786 0.609765 0.725474 0.589045