Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla11g00377 ATGAAGATCCGTTGTGATGTTTGCGAGAAAGAAGAAGCCTCTGTTTTTTGCCCCTCCGACGAAGCGGCCCTCTGTGCCGCCTGTGACCGCCACGTCCACCGCGCCAACAAGCTCGCCGAGAAACACAACCGTTTCTCTCTCCTCCAATCCACCGCCGCCGCTGCCAATTCACTGCCGTTGTGCGATATCTGCCAGGTCCGGCGAGCGTTTCTGTTCTGTCGCGAAGACAGAGCAATCCTCTGTAGAGAATGCGACATTCCAATTCACATCACCAACGATCGAACCCAGAAGCACACCCGGTTTCTTCTCACCGGCGTGAAGGTCTCGCCGTCGCCGTTGGCTTCTTCTACTTCCTCATCCTCCGTCTCAGGCGGCGGCGAAGAAATTGAAGGCGAAATTGGGTTGTTCAAGAGACGCTCGAGGAAGAGGGCTAAAATGGAGGAATTAGAGAAGCCATTGAATGTTGAAGAAAATGGGGTATCAATAAGCAGTATTTGGGAGTATTTGGAGAGTTTGCCTGGTTGGTGCGTGGAGGAGTTTCTTGATTCTTCATCTACTGCTGATATTTTTCTGTAA 576 51.74 MKIRCDVCEKEEASVFCPSDEAALCAACDRHVHRANKLAEKHNRFSLLQSTAAAANSLPLCDICQVRRAFLFCREDRAILCRECDIPIHITNDRTQKHTRFLLTGVKVSPSPLASSTSSSSVSGGGEEIEGEIGLFKRRSRKRAKMEELEKPLNVEENGVSISSIWEYLESLPGWCVEEFLDSSSTADIFL 191
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4256371 4256946 - ClCG11G004010.1 Cla11g00377 284199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla11g00377 191 Gene3D Classic Zinc Finger 1 102 - -
Cla11g00377 191 ProSiteProfiles Zinc finger B-box type profile. 56 103 IPR000315 GO:0008270
Cla11g00377 191 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 187 - -
Cla11g00377 191 SMART bboxneu5 4 47 IPR000315 GO:0008270
Cla11g00377 191 SMART bboxneu5 56 103 IPR000315 GO:0008270
Cla11g00377 191 CDD Bbox1_BBX-like 5 47 - -
Cla11g00377 191 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Cla11g00377 191 Pfam B-box zinc finger 58 99 IPR000315 GO:0008270
Cla11g00377 191 Pfam B-box zinc finger 3 44 IPR000315 GO:0008270
Cla11g00377 191 PANTHER B-BOX ZINC FINGER PROTEIN 21 1 187 - -
Cla11g00377 191 CDD Bbox1_BBX-like 60 103 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla08g01445 Cla11g00377 CCT
Cla08g01445 Cla11g00377 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla07g00964 Cla-Chr7:25824123 Cla11g00377 Cla-Chr11:4256371 1.51E-36 dispersed
Cla09g01311 Cla-Chr9:20498015 Cla11g00377 Cla-Chr11:4256371 6.73E-48 dispersed
Cla11g00377 Cla-Chr11:4256371 Cla08g01382 Cla-Chr8:26678492 7.80E-06 dispersed
Cla11g00377 Cla-Chr11:4256371 Cla02g00492 Cla-Chr2:4855440 9.25E-63 wgd
Cla11g00377 Cla-Chr11:4256371 Cla08g01445 Cla-Chr8:27322483 2.09E-47 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62005 PF00643 zf-B_box 1.60E-06 No_clan Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla11g00377 - - bhj:120089126 283.108