Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla11g00383 ATGGTAAAGTGTTTCTCTCTCATCGTCGCTCTCTCTCTCCTCGCCGTATCGGCGATTGGCGCCGAGGTCTTCTCCGGTGAATCGGACGGAGATTTTGTTATCCGTCAGGTTGTTGACGACGGAGGAGTCAACGGAGGAAGTAACGGCGACGATCTGCTACTCGGAGCCGAGCACCACTTTTCGCTCTTTAAGCGAAAGTTTGGGAAGTCGTACGCTTCCAAGGAGGAGCATGATCACCGGTTCAGGGTATTCAAAGCCAACCTGAGGCGCGCTCAACGCCACCAGGCCCTTGATCCCTCTGCTACTCATGGCGTCACTCAGTTCTCTGATTTGACTCCATCGGAGTTCCGAAGATCGTTTCTAGGGCTTAGAGGTCGTCGTCTTGGACTCCCTGCGGATGCTAACAAGGCCCCCATTCTTCCTACCGATGGTCTTCCAACTGATTTCGATTGGAGAGATCATGGCGCCGTAACGGAAGTCAAGAATCAGAAATATGACTTTTATTTACTGAACCGAGGTTTTGATCTGTTGTGTTTATTTCTGTTTTTGTTTTCTTATAAGGGTTCGTGTGGATCCTGCTGGAGTTTCAGTACAACCGGTGCTCTTGAAGGCGCTAACTTCCTTGCTACCGGAAAACTTGTTAGCCTTAGCGAACAACAGCTTGTAGATTGTGATCACGAGTGTGATCCAGAAGAAAAAGATTCCTGTGATTCTGGCTGCAATGGAGGGCTAATGAATAGTGCATTCGAGTACACATTGAAAGCCGGTGGACTTATGAAAGAGAACGACTACCCATACACTGGTACAGATCGTGGAACCTGCAAATTTGACAAGAGCAAAATTGCTGCATCAGTAGCCAACTTTAGTGTTGTCTCTCTTGATGAAGAACAAATTGCTGCCAATCTCGTGAAGAATGGCCCTCTTGCAATTGCTATCAATGCTGTATTCATGCAAACATATATAGGAGGGGTTTCTTGCCCTTACATTTGCTCAAAGCATTTGGATCATGGAGTTCTGTTGGTTGGTTATGGATCTGGTGCCTATGCTCCCATCCGATTGAAAGAGAAACCATACTGGATCATTAAGAACTCCTGGGGAGCCAACTGGGGGGAGAATGGATACTATAAAATCTGCAGGGGCCGGAATATCTGTGGAGTCGACTCCATGGTGTCGACAGTCGCTGCAGTTCATACCGCTGCGAATTAA 1206 47.68 MVKCFSLIVALSLLAVSAIGAEVFSGESDGDFVIRQVVDDGGVNGGSNGDDLLLGAEHHFSLFKRKFGKSYASKEEHDHRFRVFKANLRRAQRHQALDPSATHGVTQFSDLTPSEFRRSFLGLRGRRLGLPADANKAPILPTDGLPTDFDWRDHGAVTEVKNQKYDFYLLNRGFDLLCLFLFLFSYKGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEKDSCDSGCNGGLMNSAFEYTLKAGGLMKENDYPYTGTDRGTCKFDKSKIAASVANFSVVSLDEEQIAANLVKNGPLAIAINAVFMQTYIGGVSCPYICSKHLDHGVLLVGYGSGAYAPIRLKEKPYWIIKNSWGANWGENGYYKICRGRNICGVDSMVSTVAAVHTAAN 401
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4290094 4292589 - ClCG11G004070.2 Cla11g00383 284205

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla11g00383 401 Gene3D Cysteine proteinases 47 394 - -
Cla11g00383 401 PANTHER CYSTEINE PROTEASE RD19C-RELATED 38 163 - -
Cla11g00383 401 SMART Inhibitor_I29_2 60 116 IPR013201 -
Cla11g00383 401 Pfam Papain family cysteine protease 187 392 IPR000668 GO:0006508|GO:0008234
Cla11g00383 401 Pfam Cathepsin propeptide inhibitor domain (I29) 60 116 IPR013201 -
Cla11g00383 401 PANTHER CYSTEINE PROTEASE RD19C-RELATED 187 395 - -
Cla11g00383 401 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 334 344 IPR025660 -
Cla11g00383 401 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 38 163 - -
Cla11g00383 401 CDD Peptidase_C1A 146 393 IPR039417 -
Cla11g00383 401 PRINTS Papain cysteine protease (C1) family signature 187 202 IPR000668 GO:0006508|GO:0008234
Cla11g00383 401 PRINTS Papain cysteine protease (C1) family signature 336 346 IPR000668 GO:0006508|GO:0008234
Cla11g00383 401 PRINTS Papain cysteine protease (C1) family signature 358 364 IPR000668 GO:0006508|GO:0008234
Cla11g00383 401 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 187 395 - -
Cla11g00383 401 SUPERFAMILY Cysteine proteinases 57 392 IPR038765 -
Cla11g00383 401 SMART pept_c1 145 394 IPR000668 GO:0006508|GO:0008234
Cla11g00383 401 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 358 377 IPR025661 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla11g00383 K01373 CTSF; cathepsin F [EC:3.4.22.41] - csv:101204401 676.396
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g02166 Cla-Chr5:33243686 Cla11g00383 Cla-Chr11:4290094 2.20E-136 dispersed
Cla11g00383 Cla-Chr11:4290094 Cla01g01665 Cla-Chr1:31545388 3.53E-59 dispersed
Cla11g00383 Cla-Chr11:4290094 Cla02g00498 Cla-Chr2:4920505 0 wgd
Cla11g00383 Cla-Chr11:4290094 Cla08g01449 Cla-Chr8:27376504 1.65E-174 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1030 . . . . . . . . . . . . . . . . . Bhi04g00217 . . . Hepe10g0121 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla11g00383 Cam11g0429 Cec11g0423 Cco11g0417 Clacu11g0551 Cmu11g0408 Cre11g0894 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000642 3 3 5 4 4 3 3 3 3 3 2 3 6 3 3 4 3 5 5 3 3 3 3 3 3 3 2 4 3 4 102
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla11g00383 Cla_Chr11 FPKM 6.269639 7.698828 9.876163 9.29994 18.676075 24.761337 20.232197 5.278137 6.171766 7.04865