Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla11g00386 ATGGCAACTTACTACTCTAGTTCGAATAACGAAAGGGATGCTACTCCCATCCTCTATTCAAGGGGATCTTTGCTCGGTTCGTATGAAGAAACAACAGTTCTTCCACGGAATATGATGATGCATGTAAATTCTGGGACATACATGGATTCATTGCCTTCGCAGGCGCAAAATGGTTGTGGTCAGATAACGTCCGTTGGAGCAGTGGGAACTACCCAACAGCAGCAAGAGTTTTTATCGAATCTTGGTGGTTCGCAAATTGCTGAGCATGATTTCAATACATGGAGAGAGAACCGGAGTGAAATGCTTGGCACAAACTCGATGCGTGGCCCTACCAATGTTCTTCATGGTGGGCATAATTTGCAGGGTCAGGGGTTATCCCTTACTCTCAGTACACAAATCCCATCTGCAATCCAAATCCCTTCAATCCCCTACAGAAATTCGGATATGGGTTTAACTTCATTCCTGAGTCCTAATCCGACTAATTCAGGCGAGGATGGCTGCAGAAATGGCGCTTCTAGAGACGAACAGATGAGAAATGGAGAAAACTTGCCACCTAATTTTCAAGAATTGGCTAAGGGTGAATTATCTCAATTCAGCATGTCTAGTATTGCAAGAACTATGCCCAATTCAAAGTACCTCAAGGCAGCTCAACAACTGCTTGATGAAGTTGTTAATGTCAGGAAAGCTTTGAAGCGACCTAATAATGAGAGAAACCAGAGTTCACATGAGCATGAAACTAGAAGTGCAAAGAATGGTGATGCAGGAACCAAAAATGACAGTTCGATGCTCACTGCGAGTGGAGCATCTTCAAACCCTCAAGAAACTGGGAGCAATTCAACATGTGAGCTCTCACATGCCGAAAAGCAAGATTTGCAGAACAAGTTGACAAAGCTTTTGTACATGTTGGATGAGGTTGATAGAAGGTACAATCAGTATTATCATCAGATGCAGATTGTGGTGTCATCATTTGATGTGATAGCTGGATGTGGGGCATCTAAACCATATACTGCACTTGCTCTCCAGACTATATCCCGTCATTTTCGGTGCTTGCGGGATGCAATAGCTGGTCAAGTCAGAGCTACCCGTAAAAGCCTAGGAGAGCATGAAAATTCTGGAAATGACAAAGGAGTTGGAATCACTCGTCTCCGATATGTGGACCAGCAGTTAAGGCAACAGAGGGCTCTTCAGCAGCTTGGTATGATTCAGCAGCATGCTTGGAGGCCTCAAAGAGGGTTGCCTGAGAACTCTGTTTCAATTCTCCGTGCTTGGCTGTTCGAGCATTTCCTTCATCCGTATCCAAAGGATTCTGATAAGATCATGCTGGCACGGCAGACAGGATTGACTAGAAGTCAGGTCTCTAATTGGTTTATCAATGCGCGTGTACGTCTTTGGAAACCTATGGTAGAGGAGATGTACAAGGAAGAAATAGGAAGTGTAGACATGGACTCTATATCATCATCTGAAAATGCTGTCAAGGCAACAAAAGGAGATAACAAGACCTTTGAGGATGATAAAGAGGAGGATCTGCAACAAAGTGCAAGCTCAACAGCCACCGAAAGATGTAGTGCTGGAGACATTATCGACTTAAAATCTGATCAAGTCTCTAATCTCGGAAATTCCAGTTCCAACAGACTAGCTAGTTTCCAAAATGGTGCTCACATTGAAGCTCGAAATGAGCTGGTGAAACCGAGTGAGGAGTTAAGGCCTAATGTAAATAACTCTAGTTTCTTTCCTGATGCAATTGTCCACTCTCAGGGTGAGAGTGACAGGTTTATGGCTGCCGCTGCTGCCTATCACATGTCTGAATTGGGAAGGTTTGGGACGGTTGGCGGGGTATCGCTTACGCTGGGTTTGCAGCATTGTGAGGGTGGTGGCATGCCTATGCCTGCTGGGACACATCATGGTTTTGCAGCCATGAGAGGAGACGATATGTACAATGCCGCAGCGTCTTCTCTCGGGGAAACGGTGCATTTTGAATGCGTAAATAGTGGGAATCCGCAACCGAGGTTTGGCGCTTCCCATCTTTATCATGATTTTGTTGTGTAA 2046 44.92 MATYYSSSNNERDATPILYSRGSLLGSYEETTVLPRNMMMHVNSGTYMDSLPSQAQNGCGQITSVGAVGTTQQQQEFLSNLGGSQIAEHDFNTWRENRSEMLGTNSMRGPTNVLHGGHNLQGQGLSLTLSTQIPSAIQIPSIPYRNSDMGLTSFLSPNPTNSGEDGCRNGASRDEQMRNGENLPPNFQELAKGELSQFSMSSIARTMPNSKYLKAAQQLLDEVVNVRKALKRPNNERNQSSHEHETRSAKNGDAGTKNDSSMLTASGASSNPQETGSNSTCELSHAEKQDLQNKLTKLLYMLDEVDRRYNQYYHQMQIVVSSFDVIAGCGASKPYTALALQTISRHFRCLRDAIAGQVRATRKSLGEHENSGNDKGVGITRLRYVDQQLRQQRALQQLGMIQQHAWRPQRGLPENSVSILRAWLFEHFLHPYPKDSDKIMLARQTGLTRSQVSNWFINARVRLWKPMVEEMYKEEIGSVDMDSISSSENAVKATKGDNKTFEDDKEEDLQQSASSTATERCSAGDIIDLKSDQVSNLGNSSSNRLASFQNGAHIEARNELVKPSEELRPNVNNSSFFPDAIVHSQGESDRFMAAAAAYHMSELGRFGTVGGVSLTLGLQHCEGGGMPMPAGTHHGFAAMRGDDMYNAAASSLGETVHFECVNSGNPQPRFGASHLYHDFVV 681
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4333548 4338151 + ClCG11G004100.1 Cla11g00386 284208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla11g00386 681 MobiDBLite consensus disorder prediction 151 186 - -
Cla11g00386 681 Gene3D - 401 479 - -
Cla11g00386 681 ProSiteProfiles 'Homeobox' domain profile. 403 466 IPR001356 GO:0003677
Cla11g00386 681 MobiDBLite consensus disorder prediction 231 285 - -
Cla11g00386 681 Pfam Homeobox KN domain 423 462 IPR008422 GO:0003677|GO:0006355
Cla11g00386 681 SMART HOX_1 406 470 IPR001356 GO:0003677
Cla11g00386 681 MobiDBLite consensus disorder prediction 486 520 - -
Cla11g00386 681 SUPERFAMILY Homeodomain-like 407 474 IPR009057 -
Cla11g00386 681 MobiDBLite consensus disorder prediction 495 510 - -
Cla11g00386 681 MobiDBLite consensus disorder prediction 151 167 - -
Cla11g00386 681 CDD homeodomain 406 467 IPR001356 GO:0003677
Cla11g00386 681 MobiDBLite consensus disorder prediction 253 285 - -
Cla11g00386 681 MobiDBLite consensus disorder prediction 231 252 - -
Cla11g00386 681 SMART prehox3 201 356 IPR006563 -
Cla11g00386 681 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 71 631 - -
Cla11g00386 681 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 10 71 631 - -
Cla11g00386 681 Coils Coil 288 308 - -
Cla11g00386 681 Pfam Associated with HOX 208 355 IPR006563 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla09g00248 Cla-Chr9:2482644 Cla11g00386 Cla-Chr11:4333548 5.01E-103 dispersed
Cla10g01741 Cla-Chr10:33296516 Cla11g00386 Cla-Chr11:4333548 1.78E-101 dispersed
Cla10g02042 Cla-Chr10:36169958 Cla11g00386 Cla-Chr11:4333548 1.72E-54 dispersed
Cla11g00386 Cla-Chr11:4333548 Cla02g02176 Cla-Chr2:36850444 1.20E-101 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62006 PF07526 POX 4.00E-51 No_clan Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla11g00386 - - csv:101205137 1301.58