Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla11g00386 | ATGGCAACTTACTACTCTAGTTCGAATAACGAAAGGGATGCTACTCCCATCCTCTATTCAAGGGGATCTTTGCTCGGTTCGTATGAAGAAACAACAGTTCTTCCACGGAATATGATGATGCATGTAAATTCTGGGACATACATGGATTCATTGCCTTCGCAGGCGCAAAATGGTTGTGGTCAGATAACGTCCGTTGGAGCAGTGGGAACTACCCAACAGCAGCAAGAGTTTTTATCGAATCTTGGTGGTTCGCAAATTGCTGAGCATGATTTCAATACATGGAGAGAGAACCGGAGTGAAATGCTTGGCACAAACTCGATGCGTGGCCCTACCAATGTTCTTCATGGTGGGCATAATTTGCAGGGTCAGGGGTTATCCCTTACTCTCAGTACACAAATCCCATCTGCAATCCAAATCCCTTCAATCCCCTACAGAAATTCGGATATGGGTTTAACTTCATTCCTGAGTCCTAATCCGACTAATTCAGGCGAGGATGGCTGCAGAAATGGCGCTTCTAGAGACGAACAGATGAGAAATGGAGAAAACTTGCCACCTAATTTTCAAGAATTGGCTAAGGGTGAATTATCTCAATTCAGCATGTCTAGTATTGCAAGAACTATGCCCAATTCAAAGTACCTCAAGGCAGCTCAACAACTGCTTGATGAAGTTGTTAATGTCAGGAAAGCTTTGAAGCGACCTAATAATGAGAGAAACCAGAGTTCACATGAGCATGAAACTAGAAGTGCAAAGAATGGTGATGCAGGAACCAAAAATGACAGTTCGATGCTCACTGCGAGTGGAGCATCTTCAAACCCTCAAGAAACTGGGAGCAATTCAACATGTGAGCTCTCACATGCCGAAAAGCAAGATTTGCAGAACAAGTTGACAAAGCTTTTGTACATGTTGGATGAGGTTGATAGAAGGTACAATCAGTATTATCATCAGATGCAGATTGTGGTGTCATCATTTGATGTGATAGCTGGATGTGGGGCATCTAAACCATATACTGCACTTGCTCTCCAGACTATATCCCGTCATTTTCGGTGCTTGCGGGATGCAATAGCTGGTCAAGTCAGAGCTACCCGTAAAAGCCTAGGAGAGCATGAAAATTCTGGAAATGACAAAGGAGTTGGAATCACTCGTCTCCGATATGTGGACCAGCAGTTAAGGCAACAGAGGGCTCTTCAGCAGCTTGGTATGATTCAGCAGCATGCTTGGAGGCCTCAAAGAGGGTTGCCTGAGAACTCTGTTTCAATTCTCCGTGCTTGGCTGTTCGAGCATTTCCTTCATCCGTATCCAAAGGATTCTGATAAGATCATGCTGGCACGGCAGACAGGATTGACTAGAAGTCAGGTCTCTAATTGGTTTATCAATGCGCGTGTACGTCTTTGGAAACCTATGGTAGAGGAGATGTACAAGGAAGAAATAGGAAGTGTAGACATGGACTCTATATCATCATCTGAAAATGCTGTCAAGGCAACAAAAGGAGATAACAAGACCTTTGAGGATGATAAAGAGGAGGATCTGCAACAAAGTGCAAGCTCAACAGCCACCGAAAGATGTAGTGCTGGAGACATTATCGACTTAAAATCTGATCAAGTCTCTAATCTCGGAAATTCCAGTTCCAACAGACTAGCTAGTTTCCAAAATGGTGCTCACATTGAAGCTCGAAATGAGCTGGTGAAACCGAGTGAGGAGTTAAGGCCTAATGTAAATAACTCTAGTTTCTTTCCTGATGCAATTGTCCACTCTCAGGGTGAGAGTGACAGGTTTATGGCTGCCGCTGCTGCCTATCACATGTCTGAATTGGGAAGGTTTGGGACGGTTGGCGGGGTATCGCTTACGCTGGGTTTGCAGCATTGTGAGGGTGGTGGCATGCCTATGCCTGCTGGGACACATCATGGTTTTGCAGCCATGAGAGGAGACGATATGTACAATGCCGCAGCGTCTTCTCTCGGGGAAACGGTGCATTTTGAATGCGTAAATAGTGGGAATCCGCAACCGAGGTTTGGCGCTTCCCATCTTTATCATGATTTTGTTGTGTAA | 2046 | 44.92 | MATYYSSSNNERDATPILYSRGSLLGSYEETTVLPRNMMMHVNSGTYMDSLPSQAQNGCGQITSVGAVGTTQQQQEFLSNLGGSQIAEHDFNTWRENRSEMLGTNSMRGPTNVLHGGHNLQGQGLSLTLSTQIPSAIQIPSIPYRNSDMGLTSFLSPNPTNSGEDGCRNGASRDEQMRNGENLPPNFQELAKGELSQFSMSSIARTMPNSKYLKAAQQLLDEVVNVRKALKRPNNERNQSSHEHETRSAKNGDAGTKNDSSMLTASGASSNPQETGSNSTCELSHAEKQDLQNKLTKLLYMLDEVDRRYNQYYHQMQIVVSSFDVIAGCGASKPYTALALQTISRHFRCLRDAIAGQVRATRKSLGEHENSGNDKGVGITRLRYVDQQLRQQRALQQLGMIQQHAWRPQRGLPENSVSILRAWLFEHFLHPYPKDSDKIMLARQTGLTRSQVSNWFINARVRLWKPMVEEMYKEEIGSVDMDSISSSENAVKATKGDNKTFEDDKEEDLQQSASSTATERCSAGDIIDLKSDQVSNLGNSSSNRLASFQNGAHIEARNELVKPSEELRPNVNNSSFFPDAIVHSQGESDRFMAAAAAYHMSELGRFGTVGGVSLTLGLQHCEGGGMPMPAGTHHGFAAMRGDDMYNAAASSLGETVHFECVNSGNPQPRFGASHLYHDFVV | 681 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 4333548 | 4338151 | + | ClCG11G004100.1 | Cla11g00386 | 284208 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla11g00386 | 681 | MobiDBLite | consensus disorder prediction | 151 | 186 | - | - | |
Cla11g00386 | 681 | Gene3D | - | 401 | 479 | - | - | |
Cla11g00386 | 681 | ProSiteProfiles | 'Homeobox' domain profile. | 403 | 466 | IPR001356 | GO:0003677 | |
Cla11g00386 | 681 | MobiDBLite | consensus disorder prediction | 231 | 285 | - | - | |
Cla11g00386 | 681 | Pfam | Homeobox KN domain | 423 | 462 | IPR008422 | GO:0003677|GO:0006355 | |
Cla11g00386 | 681 | SMART | HOX_1 | 406 | 470 | IPR001356 | GO:0003677 | |
Cla11g00386 | 681 | MobiDBLite | consensus disorder prediction | 486 | 520 | - | - | |
Cla11g00386 | 681 | SUPERFAMILY | Homeodomain-like | 407 | 474 | IPR009057 | - | |
Cla11g00386 | 681 | MobiDBLite | consensus disorder prediction | 495 | 510 | - | - | |
Cla11g00386 | 681 | MobiDBLite | consensus disorder prediction | 151 | 167 | - | - | |
Cla11g00386 | 681 | CDD | homeodomain | 406 | 467 | IPR001356 | GO:0003677 | |
Cla11g00386 | 681 | MobiDBLite | consensus disorder prediction | 253 | 285 | - | - | |
Cla11g00386 | 681 | MobiDBLite | consensus disorder prediction | 231 | 252 | - | - | |
Cla11g00386 | 681 | SMART | prehox3 | 201 | 356 | IPR006563 | - | |
Cla11g00386 | 681 | PANTHER | HOMEOBOX PROTEIN TRANSCRIPTION FACTORS | 71 | 631 | - | - | |
Cla11g00386 | 681 | PANTHER | BEL1-LIKE HOMEODOMAIN PROTEIN 10 | 71 | 631 | - | - | |
Cla11g00386 | 681 | Coils | Coil | 288 | 308 | - | - | |
Cla11g00386 | 681 | Pfam | Associated with HOX | 208 | 355 | IPR006563 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla09g00248 | Cla-Chr9:2482644 | Cla11g00386 | Cla-Chr11:4333548 | 5.01E-103 | dispersed | |
Cla10g01741 | Cla-Chr10:33296516 | Cla11g00386 | Cla-Chr11:4333548 | 1.78E-101 | dispersed | |
Cla10g02042 | Cla-Chr10:36169958 | Cla11g00386 | Cla-Chr11:4333548 | 1.72E-54 | dispersed | |
Cla11g00386 | Cla-Chr11:4333548 | Cla02g02176 | Cla-Chr2:36850444 | 1.20E-101 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
62006 | PF07526 | POX | 4.00E-51 | No_clan | Cla | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla11g00386 | - | - | csv:101205137 | 1301.58 |