Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla11g00392 ATGGGATCTGCGTGTTGTGTTGCTGCTAGGGACAAGACTATAGTAAGTGGATCTGGAAGTGAAACCTTATGTAGGAATATAAGGTATTCGCCTAGTTGGAGCTTTCGATGGGATAATCGTGGACGGGTAGCTGGCGAAGAGACTTCCATAAATTGGTTTTCTGATGGTGTTAGCCGCAATGATAGAGTGGAACTGAAGTTTGAGTCGGCATATGCATCAGAGGATGGAAGTCCACTTGAACATCTCCGTAGACGTGCATGGCAAAAGTCCCCACCACCAGAAGGCACAACTAATAATTTGAGGACTCCTAGTTCAGGTCAATCAAATTCAAGGAATATATCGACAGATGTGAGTTTAGAACAGGTGAAGGAGGCTATAGAATCTCCCACAGCTTCATATAAGTCTCCTGCAAAATTGTCACTTTCATTGCCTTCAACTTCATCTTTGTCAACATCTCCTTTGTCATCTCAGAGTTATCTGCCTCCAACCAATTCATCCCTAACAAGATGTTCCCACCGATCTCCAGGACATCAGTTGTTGCGTCAAGTGTCTGACAGCCGAATCCGAGGATTAAAATCACCAAGTAGCTATTTAGCTTCGGAAGATAGACCAAGACTTCCCTCTTGGAGCAATGAATCGGTCCGGGACTCACATGGAGGGTCTTCAGATTGTTGGTCTGTGCATGCTTTCTCTGAACTCATGGCCACTTCTCATAGAGAAAGGTGGTCTTTTGATAGCGACTCGTTTGGCTTTAATGGTGAGAAAATTGCCAGATCTAGTAGTCAGATTTCAACTTCCTCAGTTGACTTGCAAACTTGCGGAGTTTGCTCGAAGCTGTTGACCGAGAAATCCTCGTGGAGTAGCCAAAGGATTATTGCTAACAATGAACTTTCCGTTGCTGCTGTACTAACCTGTGGACATGTTTATCATGCCGATTGTTTGGAGAGTATGACACCTGAGATTTACAAGTACGACCCCGCTTGTCCTGTTTGTACCTTTGGGGAGAAGCATACTCAAAAGTTGTCCGAAAAGGCACTTAAAGCTGAAATGGACTGGAAGAGTCTATATAAGAGACCCAAAAACTGTATTGCAGATAGTGATTTCGATGTCGATTTTGCTGCAAACGACCCTTTCAAAAATAATGCGCGTCTTGAAAGGGGATCGAAAATGTCTGCCAGTTCTAGCATGAGAAGCTCCTCAGGGAAGCCTTTCTTGAAACGGCACTTCTCCTTCGGCTCAAAGGGATCTTCTAGAGTGATGTCTGATAATCACTCCACAAGAAGGAAAGGATTCTTCTGGGCAAAGTCTAGCAAAGTATGA 1320 44.17 MGSACCVAARDKTIVSGSGSETLCRNIRYSPSWSFRWDNRGRVAGEETSINWFSDGVSRNDRVELKFESAYASEDGSPLEHLRRRAWQKSPPPEGTTNNLRTPSSGQSNSRNISTDVSLEQVKEAIESPTASYKSPAKLSLSLPSTSSLSTSPLSSQSYLPPTNSSLTRCSHRSPGHQLLRQVSDSRIRGLKSPSSYLASEDRPRLPSWSNESVRDSHGGSSDCWSVHAFSELMATSHRERWSFDSDSFGFNGEKIARSSSQISTSSVDLQTCGVCSKLLTEKSSWSSQRIIANNELSVAAVLTCGHVYHADCLESMTPEIYKYDPACPVCTFGEKHTQKLSEKALKAEMDWKSLYKRPKNCIADSDFDVDFAANDPFKNNARLERGSKMSASSSMRSSSGKPFLKRHFSFGSKGSSRVMSDNHSTRRKGFFWAKSSKV 439
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4383513 4388111 - ClCG11G004160.1 Cla11g00392 284214

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla11g00392 439 MobiDBLite consensus disorder prediction 91 121 - -
Cla11g00392 439 SUPERFAMILY RING/U-box 272 332 - -
Cla11g00392 439 SMART ring_2 273 331 IPR001841 -
Cla11g00392 439 MobiDBLite consensus disorder prediction 206 220 - -
Cla11g00392 439 ProSiteProfiles Zinc finger RING-type profile. 273 332 IPR001841 -
Cla11g00392 439 PANTHER EXPRESSED PROTEIN 1 433 - -
Cla11g00392 439 CDD RING-H2 298 331 - -
Cla11g00392 439 PANTHER BNAA09G43140D PROTEIN 1 433 - -
Cla11g00392 439 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 253 333 IPR013083 -
Cla11g00392 439 MobiDBLite consensus disorder prediction 133 181 - -
Cla11g00392 439 MobiDBLite consensus disorder prediction 74 221 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla11g00392 - - - bhj:120088479 813.142
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g02430 Cla-Chr5:35789438 Cla11g00392 Cla-Chr11:4383513 2.51E-16 dispersed
Cla06g01164 Cla-Chr6:24794143 Cla11g00392 Cla-Chr11:4383513 3.43E-12 dispersed
Cla11g00392 Cla-Chr11:4383513 Cla09g00315 Cla-Chr9:3051548 1.30E-06 dispersed
Cla11g00392 Cla-Chr11:4383513 Cla02g00502 Cla-Chr2:4968503 2.05E-170 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g998 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone4ag1933 Cone7ag1845 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla11g00392 Cam11g0437 Cec11g0432 Cco11g0426 Clacu11g0560 Cmu11g0417 Cre11g0902 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001394 4 6 2 3 3 2 3 2 2 2 2 2 2 2 2 1 2 2 3 2 2 2 2 2 2 2 2 5 5 1 74
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla11g00392 Cla_Chr11 FPKM 23.072472 24.746296 12.653496 12.824916 23.013454 19.647631 23.381861 13.785293 14.525167 14.939696