Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla11g00398 ATGAGTGACACCACGTCGTCCGGCACTCTTGACCGACCGAACAAAGGTGCCAACGAAGTTGAGATGTCGGAAGAAGAGAGGAAGACAAGGCTTGCGTCTCTTAAGCAGAGAGCAATCAATGCCTCGAACAAGTTCAGGCATTCGATGAAGAAGAGAGGTAGGAGAAACAGCAGTAGAGTGATGTCGGTTTCTATCGAAGACGACATCGACGCCGAGGAATTACAGGCAGTTGATGCCTTCCGCCAAGCTCTGATATTGGAAGAACTCCTGCCTTCAAAACATGACGACCATCACATGATGCTCAGGTTCTTGAGAGCTAGGAAGTTCGACATTGACAAGTCAAAGCAGATGTGGTCTGACATGCTTCAATGGAGGAAAGACTTTGGATCTGACACAATAATGGAGGAGTTCGAATTCAAGGAGATAGACGAAGTGTTGAAGTACTATCCACAAGGGCACCATGGAGTTGACAAAGATGGACGACCAGTGTACATCGAAAGACTTGGGCAAGTTGATTCGACCAAGCTCTTAGAAGTGACAACCATGGATAGATATGTCAATTATCATGTCAGAGAGTTTGAGAGGACCTTTGTTTTGAAGTTCCCTGCTTGCTCCATTGCTGCAAAGAAGCACATTGATCAGAGCACAACCATCTTGGATGTCCAAGGAGTGGGACTCAAAAACTTCAACAAATCTGCTAGGGAACTCATCCAGAGGCTACAGAAGATTGATGGTGACAACTATCCAGAGACTTTGAACAGAATGTTCATCATCAATGCTGGATCTGGATTCAGGCTTCTGTGGAACACTGTGAAATCATTCCTTGACCCAAAAACCACAGCGAAAATCCATGTTCTTGGCAATAAGTATCAAAGCAAGCTGCTTGAGATCATTGATGCCACTGAACTTCCAGATTTCCTAGGAGGTTCTTGCACCTGCGCTGACAAGGGTGGTTGCATGAGATCCGACAAGGGACCATGGAACGACCCCGAAATCGCCAAGATGGTTCAAAATGGGGAAGGAAAATGCAGGAGGAGGTCATTGTCCAATGTTGAAGAGAAGACCATTTCTGAAGAGGACAACACAACAAGCACCAAGAGAAGTGGTTCATTCAACTCAGAAGCAGCTCCTGAGGCGGCAGCAGCTGCTGCAGCAGAGAGCAAGTCACCAAAGCAAGCAAAACTGACCCCTGTTATGGAAGAAATGCATGTAGTTCAAAAGTTTGGTCATGAGTATCAATATGACAAGTTCATTCCTGTAGTGGATAAAGCTGTGGATCCAAGTTGGGCACTTTCAACTGAGAAATACACTTTATCCAAAGACCCATTTGCAGTGCATGAAAACTACAAAGTCCCAGAAGGGTTCAGCAACCAAATAGTTGGAGGAATTATGGCCTTGGTAATGGGAATAGTGACTATGGTCCGGCTAACTAGAACCATGCCAAAGAAGCTCACAGAGGCAGCCATCTATAGCAGCACCGTCTACTACGACGGTTCGATGGCGAAACATCCGGCACTACCGTCCCCCGCTGCCGTGCCTCTGAGCGACTACATGACAATGATGAAACGCATGGCCGAGCTCGAAGAGAGGGTCAATATCCTCAACATGAAGCCCGCCGCCATGCCCGCCGATAAGGAGGAAATGCTCAACATTGCTTTGGGCAAAGTTGAAACTTTGGAACAGGAATTAGAAGCAACCAAGAAGGCACTCGAGGAATCTCTTTCTCGAGAAGCAGAGCTGACTGACTACATCGAAAAGAAGAAGAAGAAGAAAAAGATGGTGAACCCATTCCGCTGGTGA 1800 46.67 MSDTTSSGTLDRPNKGANEVEMSEEERKTRLASLKQRAINASNKFRHSMKKRGRRNSSRVMSVSIEDDIDAEELQAVDAFRQALILEELLPSKHDDHHMMLRFLRARKFDIDKSKQMWSDMLQWRKDFGSDTIMEEFEFKEIDEVLKYYPQGHHGVDKDGRPVYIERLGQVDSTKLLEVTTMDRYVNYHVREFERTFVLKFPACSIAAKKHIDQSTTILDVQGVGLKNFNKSARELIQRLQKIDGDNYPETLNRMFIINAGSGFRLLWNTVKSFLDPKTTAKIHVLGNKYQSKLLEIIDATELPDFLGGSCTCADKGGCMRSDKGPWNDPEIAKMVQNGEGKCRRRSLSNVEEKTISEEDNTTSTKRSGSFNSEAAPEAAAAAAAESKSPKQAKLTPVMEEMHVVQKFGHEYQYDKFIPVVDKAVDPSWALSTEKYTLSKDPFAVHENYKVPEGFSNQIVGGIMALVMGIVTMVRLTRTMPKKLTEAAIYSSTVYYDGSMAKHPALPSPAAVPLSDYMTMMKRMAELEERVNILNMKPAAMPADKEEMLNIALGKVETLEQELEATKKALEESLSREAELTDYIEKKKKKKKMVNPFRW 599
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4490255 4494332 - ClCG11G004210.2 Cla11g00398 284220

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla11g00398 599 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 19 593 - -
Cla11g00398 599 Gene3D - 41 128 - -
Cla11g00398 599 SUPERFAMILY CRAL/TRIO N-terminal domain 67 136 IPR036273 -
Cla11g00398 599 MobiDBLite consensus disorder prediction 17 31 - -
Cla11g00398 599 MobiDBLite consensus disorder prediction 338 394 - -
Cla11g00398 599 SMART sec14_4 141 312 IPR001251 -
Cla11g00398 599 SMART CRAL_TRIO_N_2 96 121 IPR011074 -
Cla11g00398 599 Coils Coil 517 537 - -
Cla11g00398 599 Gene3D - 129 340 IPR036865 -
Cla11g00398 599 SUPERFAMILY CRAL/TRIO domain 141 337 IPR036865 -
Cla11g00398 599 MobiDBLite consensus disorder prediction 1 31 - -
Cla11g00398 599 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 141 315 IPR001251 -
Cla11g00398 599 MobiDBLite consensus disorder prediction 338 361 - -
Cla11g00398 599 Pfam CRAL/TRIO domain 147 309 IPR001251 -
Cla11g00398 599 PRINTS Cellular retinaldehyde-binding protein signature 99 121 - -
Cla11g00398 599 PRINTS Cellular retinaldehyde-binding protein signature 268 287 - -
Cla11g00398 599 Coils Coil 549 580 - -
Cla11g00398 599 Pfam CRAL/TRIO, N-terminal domain 93 120 IPR011074 -
Cla11g00398 599 CDD SEC14 142 309 IPR001251 -
Cla11g00398 599 PANTHER PHOSPHATIDYLINOSITOL/PHOSPHATIDYLCHOLINE TRANSFER PROTEIN SFH10-RELATED 19 593 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla11g00398 - - - csv:101214906 1087.02
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01939 Cla-Chr1:34069019 Cla11g00398 Cla-Chr11:4490255 0 dispersed
Cla11g00397 Cla-Chr11:4480747 Cla11g00398 Cla-Chr11:4490255 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g988 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone4ag1930 . Cone17ag1356 Cone20ag0126 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla11g00398 Cam11g0444 Cec11g0439 Cco11g0431 Clacu11g0567 Cmu11g0423 Cre11g0908 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005364 1 1 2 1 1 1 2 1 1 1 1 1 2 1 1 2 1 4 1 1 1 1 1 1 1 1 1 3 1 2 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla11g00398 Cla_Chr11 FPKM 3.101101 3.016663 4.37946 4.582666 0.438307 1.011261 0.345318 0.07148 0.060577 0.0