Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla11g00400 ATGGCTGGCGATCCTTTGACAAGCTCTAATGGCAATGCTAATGTAAATGCACCACCTGATCCTCGGAGGACTTATCAAGTTGTTGTAGCTGCTACTGAAAATATGGGCATTGGTAAGGATGGGAAACTACCATGGAGGTTGCCTTCTGATCTCAGCTTTTTTAAAAACATAACCACAACAACATCCGATCATGGGAAAAGGAATGCAGTTCTAATGGGTCGTAAAACATGGGAGAGTATTCCTGCTGAGCATCGGCCACTACCTGGTCGTCTAAATGTTGTTCTGACTCGCTCTGGGAGTTTTGACATTGCGACTGTTGAAAATGTTATTATATGTGGTAGTATAACGTCAGCTTTGGAATTATTAGCAGCTTCTCCTTACTGTTTGTCAATAGAGAAAGTGTTTGTTATAGGCGGTGGTGAGATATTAAGGGAAGCTCTGAATGCCCCTGAATGTGATGCTATCCACATTACTGAAATTGAGACAAATGTTGAATGTGACACCTTCATGCCAGCTATTGATAAGTCTATGTTTCAACCATGGTACTCATCCTTTCCAGTGGTGGAAAATAGTTTGCGATATTCGTTCACTAGTTATGTTCGTGTGAGGAGCTCAACTGAATCCCCCATTGATCAGAACAATGGTCTGGACTCTCATAAGAAACCTGATTTTTCTAACTTTGAGGCTAAGAAGTTCTCTTTCCTACCTAAGGAGATCTTTGAGAGGCATGAGGAGTACTTGTACCTAAACCTTGTTCAAGAAATCATCTCAGATGGTATTCCTAAGGATGATAGAACAGGGACAGGTACTTTGTCAAGATTTGGTTGCCAGAAAGTATTTTGGCGGGGGGTTGTTGAAGAACTTCTTTGGTTCATCAGTGGTTCAACTAATGCAAAGGATACTATTATTGTGTGTAAAGGCACTTTTAGGAACTTACGAGAAGTGATTTCACATTCTCCCAAGGGGAGTTCTTTTCCTAAAATTTTCATATTAGGAGAACGGATCCATTTCTGTTTGGCCTTAGCATATTTTCGTTCATTTAATGGAATTGAGCTTTTATGCTTTCCACATTTCTTCTACAGGTATACGGACATGCATGCTGACTACACTGGTCAAGGATTTGATCAGTTGCTAGATGTTATTAACAAGATAAAAAATAATCCTGATGACCGGAGGATCATTCTTTCTGCATGGAATCCATCTGATCTCAAACTGATGGCACTTCCTCCTTGCCACATGTTCGCTCAGTTTTATGTAGCGAATGGGGAGTTATCGTGTCAAATGTATCAGCGCTCTGCTGACATGGGCCTTGGTGTTCCATTTAATATTGCATCATATGCTCTTCTGACTTGCATGATTGCTCATGTTTGTGGTCTTGCTCGAGGTGACTTCATTCACGTGATTGGAGATGCTCATGTTTACCGTACTCATGTGAGGCCATTGCAGGAGCAGCTTCAGAAACTCCCCAAACCGTTCCCCATTTTGAAGATAAATCCCGAGAAGAAGGATATCGATTCTTTTGTGGCAGATGATTTTGAACTAACAGGTTATGACCCTCATGAGAAGATAGCAATGAAAATGGCAGTTGAATATGAGAATCCTTTAGTCCCTATGGTTGGTTCTAAAGGGTTGGAACGCAGTATCGGAGTTCGTATGGCGATGTTGTCATGGAGGCTAGGACAGGATAATTTGCTTGAATGGCATCTGAGTCCCTCAATTGGGGTTCTTGTTTGGAGATTGGAGTTGGAATTGGATGCCTCTATTCCAAGGACTGGTTGCCTTGAATTGAATATTATATAA 1800 41.33 MAGDPLTSSNGNANVNAPPDPRRTYQVVVAATENMGIGKDGKLPWRLPSDLSFFKNITTTTSDHGKRNAVLMGRKTWESIPAEHRPLPGRLNVVLTRSGSFDIATVENVIICGSITSALELLAASPYCLSIEKVFVIGGGEILREALNAPECDAIHITEIETNVECDTFMPAIDKSMFQPWYSSFPVVENSLRYSFTSYVRVRSSTESPIDQNNGLDSHKKPDFSNFEAKKFSFLPKEIFERHEEYLYLNLVQEIISDGIPKDDRTGTGTLSRFGCQKVFWRGVVEELLWFISGSTNAKDTIIVCKGTFRNLREVISHSPKGSSFPKIFILGERIHFCLALAYFRSFNGIELLCFPHFFYRYTDMHADYTGQGFDQLLDVINKIKNNPDDRRIILSAWNPSDLKLMALPPCHMFAQFYVANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCGLARGDFIHVIGDAHVYRTHVRPLQEQLQKLPKPFPILKINPEKKDIDSFVADDFELTGYDPHEKIAMKMAVEYENPLVPMVGSKGLERSIGVRMAMLSWRLGQDNLLEWHLSPSIGVLVWRLELELDASIPRTGCLELNII 599
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4513644 4518895 + ClCG11G004230.2 Cla11g00400 284222

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla11g00400 599 Gene3D Dihydrofolate Reductase, subunit A 8 203 IPR024072 -
Cla11g00400 599 SUPERFAMILY Thymidylate synthase/dCMP hydroxymethylase 244 529 IPR036926 -
Cla11g00400 599 PANTHER BIFUNCTIONAL DIHYDROFOLATE REDUCTASE-THYMIDYLATE SYNTHASE 1 529 - -
Cla11g00400 599 Gene3D Thymidylate synthase/dCMP hydroxymethylase domain 346 529 IPR036926 -
Cla11g00400 599 TIGRFAM thym_sym: thymidylate synthase 369 529 IPR000398 GO:0004799|GO:0006231
Cla11g00400 599 Pfam Dihydrofolate reductase 26 201 IPR001796 GO:0004146|GO:0046654
Cla11g00400 599 PIRSF DHFR-TS 9 304 IPR012262 GO:0004146|GO:0004799|GO:0006730
Cla11g00400 599 PIRSF DHFR-TS 350 529 IPR012262 GO:0004146|GO:0004799|GO:0006730
Cla11g00400 599 MobiDBLite consensus disorder prediction 1 19 - -
Cla11g00400 599 CDD DHFR 28 200 IPR001796 GO:0004146|GO:0046654
Cla11g00400 599 CDD TS_Pyrimidine_HMase 248 482 IPR023451 -
Cla11g00400 599 ProSitePatterns Dihydrofolate reductase (DHFR) domain signature. 36 58 IPR017925 GO:0004146
Cla11g00400 599 ProSiteProfiles Dihydrofolate reductase (DHFR) domain profile. 24 201 IPR001796 GO:0004146|GO:0046654
Cla11g00400 599 SUPERFAMILY Dihydrofolate reductase-like 22 201 IPR024072 -
Cla11g00400 599 Pfam Thymidylate synthase 248 529 IPR023451 -
Cla11g00400 599 ProSitePatterns Thymidylate synthase active site. 391 419 IPR020940 GO:0004799|GO:0006231
Cla11g00400 599 PANTHER THYMIDYLATE SYNTHASE 1 1 529 IPR045097 GO:0016741
Cla11g00400 599 MobiDBLite consensus disorder prediction 1 21 - -
Cla11g00400 599 Gene3D Thymidylate synthase/dCMP hydroxymethylase domain 233 307 IPR036926 -
Cla11g00400 599 PRINTS Thymidylate synthase family signature 424 450 IPR000398 GO:0004799|GO:0006231
Cla11g00400 599 PRINTS Thymidylate synthase family signature 462 479 IPR000398 GO:0004799|GO:0006231
Cla11g00400 599 PRINTS Thymidylate synthase family signature 380 399 IPR000398 GO:0004799|GO:0006231
Cla11g00400 599 PRINTS Thymidylate synthase family signature 271 292 IPR000398 GO:0004799|GO:0006231
Cla11g00400 599 PRINTS Thymidylate synthase family signature 406 421 IPR000398 GO:0004799|GO:0006231
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla11g00400 K13998 DHFR-TS; dihydrofolate reductase / thymidylate synthase [EC:1.5.1.3 2.1.1.45] - csv:101208660 879.782
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g987 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone20ag0127 . . . . . . . Bda01g01504 Bpe02g01702 . Bma01g00752 . . . . . . . . . . . . . . . . . Cla11g00400 Cam11g0445 Cec11g0441 Cco11g0432 Clacu11g0569 Cmu11g0425 Cre11g0909 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004370 2 2 3 2 2 1 1 1 1 1 1 1 2 1 1 1 1 4 2 1 1 1 1 1 1 1 1 2 1 2 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla11g00400 Cla_Chr11 FPKM 2.006993 2.181506 0.811399 0.64445 19.896633 19.579292 16.952816 0.0 0.0 0.0