Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla11g00408 ATGATCCAACAGAACACTCGACAACATCTTCTCCACCAACTAGCTAATCTCACAGCTGGACAAAAAAGATGGCGAGACTGTTTAAAAGAATCGGAGCGTTCCGTTTCAGAACAAAGTGAACCGTTCGGTCACCGTTACAGCTCCGATCAGGTTTTGTCCGCCGGGAACCTTAATTCGATGGCTCAGAAGCTCAAGGTTCTCATCATCGGAGGCACTGGTTACATAGGAAAATTTGTAGTAGAAGCCAGCGCCAAAGCAGGTCATCCAACTTATGCATTGGTCCGCGAATCTACGCTCGCTGACTCCGCCAAGTCTTCGATCATCGATAATTTCAGGAGCTTGGGTGTCAATTTCGTCTTCGGCGATATATTCGACAATGAGAGTCTGGTTAGGGCAATACAGCAGGTTGATGTGGTGATATCCACCGTTGGTCGTCCTCTGTTGTCCGATCAAGGTAACATCATATCTGCTATCAAACAAGCTGGTAATGTTAAGAGGTTTTTTCCCTCCGAGTTTGGCAACGATGTGGATCGTGTTCACGCCGTGGAGCCGGCAAAATCGATGTTTGCCCATAAGGTTGAAATTCGTAGGGCTGTTGAGGCAGAGGGAATCCCACATACATATGTTGTTAGCAATTTCTTCGATGGTTACCATCTTCGCAACTTTTCTCAGCCAGGAGCCACCAACCCACCTAGAGACAAAATCAGAATCTTAGGGGATGGAAGTCTCAAAGTGATTTACAACAAGGAAGAAGACATTGGGACATACACCATCCGAGCCATAGATGATCCAAGAACCCTCAACAAGATCTTGTACATTAGACCTCCTGCCAACACCTACTCAACTAATGAGCTAGTCTCACTTTGGGAGAAAAAAATTGGCAGGACTCTTGAAAGGACCTACGTCCCAGAGGAGGAGCTTGTGAAGAACATCCATGAAACTCCATTTCCACTTAATACAGCATTAGCGATTAGTCACAGTGCTTTTGTGAAGGGAGATCATGCCAACTTTGATATTGAACCATCAGTTGGAGTGGAAGCTTCAGAGCTGTACCCAGATGTTCAATACACAACTGTGGAAGACTACCTCAACCAGTTTGTTTAG 1104 45.65 MIQQNTRQHLLHQLANLTAGQKRWRDCLKESERSVSEQSEPFGHRYSSDQVLSAGNLNSMAQKLKVLIIGGTGYIGKFVVEASAKAGHPTYALVRESTLADSAKSSIIDNFRSLGVNFVFGDIFDNESLVRAIQQVDVVISTVGRPLLSDQGNIISAIKQAGNVKRFFPSEFGNDVDRVHAVEPAKSMFAHKVEIRRAVEAEGIPHTYVVSNFFDGYHLRNFSQPGATNPPRDKIRILGDGSLKVIYNKEEDIGTYTIRAIDDPRTLNKILYIRPPANTYSTNELVSLWEKKIGRTLERTYVPEEELVKNIHETPFPLNTALAISHSAFVKGDHANFDIEPSVGVEASELYPDVQYTTVEDYLNQFV 367
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4600607 4605622 - ClCG11G004320.2 Cla11g00408 284230

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla11g00408 367 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 65 335 IPR036291 -
Cla11g00408 367 Gene3D - 213 363 - -
Cla11g00408 367 Gene3D - 65 353 - -
Cla11g00408 367 CDD PCBER_SDR_a 65 362 IPR045312 GO:0016491
Cla11g00408 367 PANTHER PHENYLCOUMARAN BENZYLIC ETHER REDUCTASE 1 60 367 - -
Cla11g00408 367 PANTHER PINORESINOL REDUCTASE-RELATED 60 367 - -
Cla11g00408 367 Pfam NmrA-like family 66 314 IPR008030 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla11g00408 K23050 PCBER1; phenylcoumaran benzylic ether reductase [EC:1.3.1.-] - csv:101210299 548.125
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla11g00408 Cla-Chr11:4600607 Cla11g00409 Cla-Chr11:4607590 7.69E-99 tandem
Cla02g00702 Cla-Chr2:8294286 Cla11g00408 Cla-Chr11:4600607 5.23E-88 transposed
Cla08g01480 Cla-Chr8:27668677 Cla11g00408 Cla-Chr11:4600607 1.72E-156 transposed
Cla09g01278 Cla-Chr9:19017460 Cla11g00408 Cla-Chr11:4600607 3.70E-42 transposed
Cla10g00530 Cla-Chr10:7048896 Cla11g00408 Cla-Chr11:4600607 2.67E-154 transposed
Cla11g00408 Cla-Chr11:4600607 Cla02g00503 Cla-Chr2:4986496 7.36E-151 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g963 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo17g00792 . . . . . . Bma05g00127 . . . . . . . . . . . . . . . . Cla11g00408 Cam11g0454 Cec11g0450 Cco11g0441 Clacu11g0579 Cmu11g0437 Cre11g0918 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000111 5 10 6 7 3 10 5 11 9 7 10 9 5 7 11 5 9 5 6 10 8 9 7 8 12 9 8 7 9 7 234
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla11g00408 Cla_Chr11 FPKM 37.53006 37.938538 34.410793 36.398155 36.433525 30.83749 36.008984 51.244957 51.661167 56.428631