Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla11g00409 ATGGCTCCTTCAGATATGACAACTGCAAGGCTGATAAGAGTGGATCAATCAGGAAATGGAGATTTTAAGAAAATTCAAGAAGCAATTGATTCTGTTCCATCTCATAACAATGAACTCGTTTTCATTTGGGTTAAGCCTGGAACTTACAGCGGCAATAAGGCCTCCGACACCATAATCACAGGGAACGAAGGAAGAGATTTACTTCAATCTCCGGTGGTCTCGGTCTTTGCCTCGGACTTTATCGGTCGTTTTCTGACCATCCAAAACACCTTTGGCACTACCGGCATTGCGGTGGCGCTGAGGGTCTCGGCCGATAGAGCCGCCTTCTATGGCTGCCGGATCATCTCCTTTCAAGATACCCTTTTGGACGACGTTGGAAGACATTACTTCAAGAGCTGTTACATTGAAGGAGCCACCGATTTCATATGCGGAAATGCCACTTCTCTCTATGAGAAGTGTCATTTGCATTCGACGTCGGATAGAGGTGGGGCGATGACGGCACAACATCGGAACACGGCGGAGGAGAACACCGGGTTCGTGTTCTTGGGGGGAAAAATAACAGGAAGTGGCTCCACTTTTCTTGGAAGGCCATGGGGAGATTTTTCTAGGGTTATGTTTGGCTACACTTACATGTCCAATGTTGTTGAACCACAGGGCTGGAATGATTGGGGAGATCAAAGCAAGCAAAGTTTTGATGGATGCAAGACCATTTTCCTGGGTTTAGATTGTTTGGTAAAACAACCACTTACCGGCCGTGGAGAAAACGAAACAGCAACTCCAAATTCCAAACCCTCAGATTGTTCTTCGTCGCCGGTGGAAGCTGCTACATTTCTCCGATTCAACTCGAAAATGGAGGAGAAAAGCAAGATTCTGATCATTGGAGCAACAGGTTACCTAGGGTTTCATTTGGCTCAAGCCAGCTCCAATTCTTCTCACCCTACATTTGCTCTCATCAGAGATTCTACTTTCTCTTCACCTCACAAACTAGACAAGCTCCGAGCTCTTTCCGATGCCGGAGTTAAATTCCTCAAGGGTTCTCTAGAAGACGAAGCTAGCCTTGTGGAAGCTATTAATCAAGTGGATGTGGTCATTTGTGCTGTTTCATCTAAACAGGTGTCGGAACAGAAGCCTCTGATTCGAATCATAAAACAAACTGGATCCATTAAGAGGTTTATTCCATCGGAATTTGGACTTGATCCGGATAAGGTTCAAATATTAAATATGGATTACGACTTCTATTCCCGCAAAGCTGAAATTCGTCGGCTAATTGAAGCTGAAGGCATTCCATATACCATAGTTTCTTGCAATTTTTTTACAAGTTATTTACTTCCTTCCCTTGTACAACCAGGCATGAAAAGTCCTCCAAGGGATAAGGTGACAATATTTGGTGATGGAAATACCAAAGGTGTATTTGTGAAGGTCAATGATGTTGCTGCCTTGACAATTAGTGCAGTGGATGATCCACGCACGTTGAACAAGGTAGTTTATTTAAGGCCCGAAGGAAATGTTTATTCCTTGAATGAACTGGTTGAGATTTGGGAGAGCAAAATTGGGAAGAAGCTTGAGAAGAATTATGTATCAGAAGAGGAGCTGCTAAAGAAAATTAAAGAGACTCCTTATCCTGACAACATGGCTTTCATTTTCATATATTCTGCATTTATAAAGGGAGATCAAACATACTTCGATATTGAGGCATCAAATGGCGTTGATGGTTCACAATTAGATCCACAACTCAAGCATACCACGATTAGTGAGTTTTTGGACACCCTATTGGGCAATTTGGACATTTTAAGAATATTCCATTTCGCAATATATATACGTGAATTTCAGTTCCAAGTCGCACCCGTCAAAGCAATATTTCTAAACAACGACAAAGGAACTCTCCCAGCGTTTTCTTCTTTCTTTCTGCAGCTCGACGGTAGTCCTCCGATCAGCCATTTCTTCGCCGGAAACCTTACTCCAATGGCTCAGAATCTCAAGGTTCTTATTATCGGAGGAACTGGCTACATCGGAAAATTCATAGTACAAGCCAGCGCCAAAGCCGGTCATCCTACCTATGCCTTGATCCGCAAGTCTTCGCTCGCAAGCCCCGCCAAGTATCGAATCATCAATCATTTCAAAAGCTTAGGGGTCAATTTTCTCTTCGGCGATCTCTTTGACAATGAAAGTTTGGTTAAGGCGATTAAGCAGGTTGATGTGGTGATATCAACCCTCGGTGGTCATATGGTTCCCCATCAACATAAGGTCCTATCAGCTATCAAACAAGCTGGCAATGTGAAGAGATTCTTTCCTTCTGAGTTCGGCAACGATGCAGATCATATCGATGCAGTGGAGCCAGCGAAATCAATGTATGCTGCAAAGGCTGAATTTCGTAGAGCTGTTGAGGCTGAGGGAATCCCACATACATTTGTCGTATGCAATTTCTTCGACGTGATTTACAACAAGGAAGAAGACGTTGGGACGTACACAATCCGAGCTATCGACGATCCAAGGACCCTCGACAAGATCATGTACCTTAGACCCCCAGCCAACATCTACTCAACCAATGATCTCGTCTCGCTGTGGGAGAGAAAAATTGGCAAGAGTCTTAAAAGGATCTACGTCCCAGAGGAGGAAGTGTTGAAGAACATCAAAGAGACTTCATATCCACTTAATATAGAATTGGCACTCTGTCACACTGCTCAAGTGAAAGGATCTCAAACTAATTTTGATATTGAGCCATCTTTTGGAGTGGAAGCTTCAGCTTTGTACCCAGATGTTCGATATACAACTGTGGAAGAATACCTCGACCAGTTTGTCTGA 2802 43.61 MAPSDMTTARLIRVDQSGNGDFKKIQEAIDSVPSHNNELVFIWVKPGTYSGNKASDTIITGNEGRDLLQSPVVSVFASDFIGRFLTIQNTFGTTGIAVALRVSADRAAFYGCRIISFQDTLLDDVGRHYFKSCYIEGATDFICGNATSLYEKCHLHSTSDRGGAMTAQHRNTAEENTGFVFLGGKITGSGSTFLGRPWGDFSRVMFGYTYMSNVVEPQGWNDWGDQSKQSFDGCKTIFLGLDCLVKQPLTGRGENETATPNSKPSDCSSSPVEAATFLRFNSKMEEKSKILIIGATGYLGFHLAQASSNSSHPTFALIRDSTFSSPHKLDKLRALSDAGVKFLKGSLEDEASLVEAINQVDVVICAVSSKQVSEQKPLIRIIKQTGSIKRFIPSEFGLDPDKVQILNMDYDFYSRKAEIRRLIEAEGIPYTIVSCNFFTSYLLPSLVQPGMKSPPRDKVTIFGDGNTKGVFVKVNDVAALTISAVDDPRTLNKVVYLRPEGNVYSLNELVEIWESKIGKKLEKNYVSEEELLKKIKETPYPDNMAFIFIYSAFIKGDQTYFDIEASNGVDGSQLDPQLKHTTISEFLDTLLGNLDILRIFHFAIYIREFQFQVAPVKAIFLNNDKGTLPAFSSFFLQLDGSPPISHFFAGNLTPMAQNLKVLIIGGTGYIGKFIVQASAKAGHPTYALIRKSSLASPAKYRIINHFKSLGVNFLFGDLFDNESLVKAIKQVDVVISTLGGHMVPHQHKVLSAIKQAGNVKRFFPSEFGNDADHIDAVEPAKSMYAAKAEFRRAVEAEGIPHTFVVCNFFDVIYNKEEDVGTYTIRAIDDPRTLDKIMYLRPPANIYSTNDLVSLWERKIGKSLKRIYVPEEEVLKNIKETSYPLNIELALCHTAQVKGSQTNFDIEPSFGVEASALYPDVRYTTVEEYLDQFV 933
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4607590 4624407 - ClCG11G004330.2 Cla11g00409 284231

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla11g00409 933 PANTHER PINORESINOL REDUCTASE-RELATED 812 931 - -
Cla11g00409 933 PANTHER PINORESINOL REDUCTASE-RELATED 659 811 - -
Cla11g00409 933 PANTHER PINORESINOL REDUCTASE-RELATED 285 589 - -
Cla11g00409 933 CDD PCBER_SDR_a 660 928 IPR045312 GO:0016491
Cla11g00409 933 Pfam NmrA-like family 661 811 IPR008030 -
Cla11g00409 933 Pfam NmrA-like family 290 521 IPR008030 -
Cla11g00409 933 Pfam NmrA-like family 814 868 IPR008030 -
Cla11g00409 933 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 660 892 IPR036291 -
Cla11g00409 933 Gene3D - 435 587 - -
Cla11g00409 933 Gene3D - 659 852 - -
Cla11g00409 933 PANTHER PINORESINOL-LARICIRESINOL REDUCTASE 3-RELATED 812 931 - -
Cla11g00409 933 PANTHER PINORESINOL-LARICIRESINOL REDUCTASE 3-RELATED 659 811 - -
Cla11g00409 933 PANTHER PINORESINOL-LARICIRESINOL REDUCTASE 3-RELATED 285 589 - -
Cla11g00409 933 Pfam Pectinesterase 14 227 IPR000070 GO:0030599|GO:0042545
Cla11g00409 933 Gene3D - 289 575 - -
Cla11g00409 933 Coils Coil 518 538 - -
Cla11g00409 933 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 286 558 IPR036291 -
Cla11g00409 933 CDD PCBER_SDR_a 289 567 IPR045312 GO:0016491
Cla11g00409 933 SUPERFAMILY Pectin lyase-like 7 227 IPR011050 -
Cla11g00409 933 Gene3D - 6 279 IPR012334 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla11g00409 - - - csv:101210047 568.155
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cla08g01478 Cla11g00409 CCT
Cla08g01478 Cla11g00409 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla10g00530 Cla-Chr10:7048896 Cla11g00409 Cla-Chr11:4607590 7.00E-102 dispersed
Cla11g00408 Cla-Chr11:4600607 Cla11g00409 Cla-Chr11:4607590 7.69E-99 tandem
Cla11g00409 Cla-Chr11:4607590 Cla08g01478 Cla-Chr8:27653586 2.62E-93 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g961 . . . . . . . . . Cmo12g00413 . . . Car12g00436 . . Cpe07g00413 Bhi04g00183 . . . Hepe10g0628 . . Cla08g01478 Cam08g1965 Cec08g1540 Cco08g1677 Clacu08g1655 . Cre08g1439 . . Cone17ag1350 Cone20ag0134 . . . Cme03g01944 . . . . . . . . . . . Cma12g00463 . . . . . . . . . . . . Cla11g00409 Cam11g0456 Cec11g0451 Cco11g0442 Clacu11g0580 Cmu11g0438 Cre11g0920 . Csa02g02065 Chy03g01447 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000111 5 10 6 7 3 10 5 11 9 7 10 9 5 7 11 5 9 5 6 10 8 9 7 8 12 9 8 7 9 7 234
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla11g00409 Cla_Chr11 FPKM 1.984865 2.216644 4.401824 2.8667 3.0581 2.920963 3.010971 115.217224 120.113228 110.976654