Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla11g00412 ATGTTGAAGTCGGAGATGACGCCGTCGGCTCGACTCAAACGGCAGCGACCCCATGGCGACTGCCGGAGCTTGTCTTCCGTCTCGACTCCGGCAAGTCGGGTCAACCATTTTGAGGATCTAGTTGCACCTGGAGGTTGGCCCGAGTTAGCTAAGTACGAGATCTCCTCTACGAAGTTTCGAACCAATCAGACGTGTTCACTACTAACAGAGGCGAACTCCGTGGTGGAGGGAGAGATTGCAAAAAAGAGAAAAGGGAAGAAGAAGGAAATGAAATGGAAAGGGAGAGATGACAATAATAATGTTGAATGGGGGAATGGAAGAGAGAAGAAAATGAAAGGAAAGGTTGAAGAAGATGAAGATGATGAAGATGAATCAAAGATTACGGAGGAAAGAGAGAGATGGAAATGCAATTCAAAAGCTTCAAAAGAAGTTCAAAAATCGGATTATGTTCATGTGAGAGCACGTCGAGGCCAAGCCACTGATAGCCATAGTCTTGCTGAAAGAGCAAGGAGAGAGAAGATAAGTGAGAGAATGAAGTATTTGCAGAATTTGGTCCCTGGGTGTAACAAAATTGCTGGAAAAGCTGGAATGCTTGATGAAATTATTAATTATGTTCAATCTCTCCAACAACAAGTTGAGTTCTTATCTATGAAGGTGGCTGCTCTCAATCACAGAGTTGATTTCATCAATGTAGATGACTTCTTGGCCAAACAGGTGTTTCCGACGTTAACAACCGATTGTTCATCCTACTTTAATCAACTTGGAAAGGGCTCAACCTCTGTAACAGTCCCACAAACTCCATTGATCAATAACAACTTGTCTTCAATTACTCATTTTGAACTGTCTTCAACTTGGGGAGGTGATTTACAAAGGTTTGAAGAAGGAGGGCCTCCATTGTTGTCGCCATCAAGCTTTTTATCGCAGCAATGTTCAGGCATTGAAGATGAAAATGAAACATTATTTTTGGACCACAAACTTGTTCCATTTTAA 990 42.32 MLKSEMTPSARLKRQRPHGDCRSLSSVSTPASRVNHFEDLVAPGGWPELAKYEISSTKFRTNQTCSLLTEANSVVEGEIAKKRKGKKKEMKWKGRDDNNNVEWGNGREKKMKGKVEEDEDDEDESKITEERERWKCNSKASKEVQKSDYVHVRARRGQATDSHSLAERARREKISERMKYLQNLVPGCNKIAGKAGMLDEIINYVQSLQQQVEFLSMKVAALNHRVDFINVDDFLAKQVFPTLTTDCSSYFNQLGKGSTSVTVPQTPLINNNLSSITHFELSSTWGGDLQRFEEGGPPLLSPSSFLSQQCSGIEDENETLFLDHKLVPF 329
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4667802 4672108 - ClCG11G004370.2 Cla11g00412 284234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla11g00412 329 Gene3D - 155 230 IPR036638 GO:0046983
Cla11g00412 329 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 3 321 IPR024097 GO:0006355
Cla11g00412 329 MobiDBLite consensus disorder prediction 1 30 - -
Cla11g00412 329 Pfam Helix-loop-helix DNA-binding domain 162 209 IPR011598 GO:0046983
Cla11g00412 329 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 158 208 IPR011598 GO:0046983
Cla11g00412 329 SMART finulus 164 214 IPR011598 GO:0046983
Cla11g00412 329 MobiDBLite consensus disorder prediction 90 116 - -
Cla11g00412 329 CDD bHLH_AtBPE_like 148 234 - -
Cla11g00412 329 PANTHER TRANSCRIPTION FACTOR BHLH74 3 321 - -
Cla11g00412 329 MobiDBLite consensus disorder prediction 80 139 - -
Cla11g00412 329 Coils Coil 205 225 - -
Cla11g00412 329 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 156 228 IPR036638 GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla09g00792 Cla-Chr9:8020731 Cla11g00412 Cla-Chr11:4667802 8.63E-45 dispersed
Cla11g00412 Cla-Chr11:4667802 Cla06g01775 Cla-Chr6:31204841 3.47E-37 dispersed
Cla11g00412 Cla-Chr11:4667802 Cla02g00509 Cla-Chr2:5100515 2.28E-56 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62009 PF00010 HLH 2.60E-06 No_clan Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla11g00412 - - csv:101216346 432.18