Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla11g00420 ATGGAGAGGCAGAGCATGAATATAGCGAAACAAGAAGGAAGGCAATGGCAGAATAATCGGAGAAGAAGAGTTTCCCAACGCCGCCGCTGTCGTTTTTGGAGCACCGGTCAGAGTTTCTCCGGCACTATTCAGACCACTACTCCTTTGCCGGAAACTCTACTAATGTCTTCTTCATCCGATCCTCCTTCCCCTTCTTCTTCTGATTCTGATCCCTCTAATCCCCCTCCTTCTCCACCTCCTTCCACTGCGCCGCCTCCCGATGCTTCTCCGCCTCCCCCGGATTCCTCCTCCTCCTCTCCTCCTCCGCCGGATTCTTCTCCTCCTCCTCCACCCGATGCTTCTTCTCCACCTCCGCCAGATGCATCCCCGCCGCCGCCTAACGACACCTCCCCGCCTCCTGGTGATTCCTCTTCTTCACCGCCACCGCCGAAGGATTCCAACTCTAATTCTCCTCCGTCGCCGCCGCCTCCTCCACCACCACCACCGCCGCCGCCGCCGCCTCCTCCGCCGCGTGGATCCTCAAGGCATTCTCCTCCGCCTCCGAGATCGATCGACTCAGGATCCTCAGACTCCTCGTCCGGCGGTTCCGCTCCCCAGGCGGTGCCGATCATTGTAGGAGTGGCGGTGGCGGCAGGGTTTTTACTTTTCGCCATGGCCTTGATATTCTTCGCTTGCACCCGAAAGAAAAAGAAGCAAAATAGTAATTCCATGTATTTCGATGAACAGTCCGGTCCGAAAGGTGGGGATCCATATTACAACGGAAGGAATCACAACTGGAACAACCCGAGCGAACATTTCGTGAACATGGCGCCAATCAGCGGCGGAACCCAAGGAGGAGGGTGGCCATCGCCGCCGCCGCCTCCTCCGCCGGGATTATTGAGCAGTGATATGAGCTCGAATTTCTCAGGGCCACATGGGCCACCGTTGCCGCCGCCGCACCCATCGGTGGCTCTGGGGTTCAATAAGAGCACTTTCACGTATGATGAGCTGATGGCGGCAACCTCGGGATTCTCTCCGGCGAATCTGTTGGGGCAAGGAGGATTCGGGTATGTTCATAAAGGACTACTGCCCAACGGCAAGGAAATTGCAGTGAAAAGCCTGAAAACAGGAAGCGGGCAAGGAGATCGAGAATTTGCGGCCGAGGTGGAGATCATCAGCCGCGTTCACCACCGCCATCTGGTGTCCCTTGTCGGGTATTGCATCGCCGGTGACCGGAAGATGTTGGTTTACGAATTTGTCCCTAATAACAACCTCGAATTCCACCTTCACGGCAAGGGGCGGCCACCATTGGACTGGTCGACGAGAACGAAGATCGCATTGGGCTCAGCCAAGGGCCTAGCCTATCTCCACGAAGACTATATATTCTCATTTGGAGTAATGCTTTTGGAGCTGATTACCGGAAGACGACCGGTGGACACGGCCGGGGAAATGGAAGACAGCTTAGTGGACTGGTCAAGGCCTCTTTGTGTGAAAGCAATGAGTAATGGAAACTATGATGAGTTGGCTGATTCACGGTTAGAGAAGAACTATGATGTCCAAGAAATGGCTTGCATGGTGGCTTGCGCCGCCGCTTGCATTCGCCATTCGGCTCGGCGCCGTCCCAAAATGAGCCAGGTGGTACGAGCATTGGAAGGCGATGTGTCGCTGGATGACTTGAACGATGGAGTAAAGCCAGGGCAAAGCTCATACTTCGGGTCCGGCACGTCCTCGGAGTACGACGCAAGCTCCTATAGTGCCGACATGAAGAGGTTCCGAAAGGTGGCGTTGGACAGCCGCGAGTACGCAAGCAGCGATTATGGCGGCACTAGCGATGAAGTAGTGAAGAACAAACCTGAAAAGGTAGTTGTGAAATCTTCGCCATTTCAATCCCATCCACCGACGAATTTTCCCTCCAACTCTCTTCCATTCCGATCTCTCGCCGCTTCTTCCGCCATGGCTCAGCCTCTTGTCAAGAAGGACGACGACTACGACGACGAAGAGGAATATTCTCCGTTTTTGGGGATTGAGAAAGGTACTGTTCTTCAGGAAGCAAGGGTATTCAATGATCCTCAGCTAGACACAAGGAAATGCTCCCAGGTCATAACGAAGCTTTTGTATCTTCTCAACCAAGGTGAAACCTTCACAAAGGTTGAAGCTACAGAAGTGTTCTTTGGTGTGACTAAGCTCTTCCAGTCCAGAGATATAGAATTGAGGAGAATGGTTTATTTAATGATAAAGGAGCTCTCTCCATCTTCTGATGATGTTATCATCGTGACAAGCTCCTTGATGAAGGACATGAACAGCAAGAATGATATGTACCGTGCTAATGCTATACGTGTACTTTGTAGAATTACAGATGGTACCCTTCTCACCCAAATTGAGCGGTATCTGAAACAAGCAATTGTGGACAAAAACCCAGTGGTTGCTAGCGCAGCCTTGGTTAGTGGGATTCATTTACTCCAGACCAATCCTGAGATTGTGAAGCGATGGAGTAATGAGGTCCAGGAAGCTGTTCAGTCAAGGGCACCACTTGTACAATTTCATGCCTTGGGTTTGCTTCATCAGATTCGTCAGAATGATCGTTTAGCCGTTAACAAGTTGGTTAGTAGCTTGACGCGGGGCACTGCTCGCTCTCCTCTGGCCCAATGCCTTTTGGTTCGTTATGCCAGTCAGGTTGCTAGTGAATCAGCTGCTAATAGTCAAACTGGGGACCGACCTTTATATGATTTTCTAGACAGTTGTCTGCGGCACAAATCAGAGATGGTCATTCTTGAGGCTGCCAGAGCTATTGCAGAACTAAACGGTGTGACAAGTAGAGAAGTTACTCCAGCAATTACTGTACTTCAGCTCTTTTTAAACTCTCCCAAGCCAGTACTGAGATTTGCTGCTATCCGTACTCTGAACAAGGTGGCAATGACACATCCAATGGCTGTCACGAACTGTAACATTGATATGGAGAGTTTGATTTCAGACCAGAACAGAAGCATTGCAACTCTTGCAATAACCACACTTCTAAAGACTGGAAATGAATCAAGTGTGGATCGCCTGATGAAACAGATAACAAACTTTATGTCAGATATTGCTGATGAATTTAAAATTGTAGTTGTGGATGCCATTAGATCCCTGTGTTTGAAGTTTCCATTGAAGTACAGATCTCTGATGAACTTCCTATGCAACATTCTCAGAGAAGAAGGTGGATTTGAGTACAAAAAGGTGATAGTTGATTCAATTGTGATCCTTATTAGAGATATCCCTGAAGCAAAAGAAAATGGTTTGCTTCATTTGTGTGAGTTCATAGAGGATTGCGAATTCACTTATCTTTCCACACAGATACTACACTTTTTGGGAATTGAAGGTCCGAAAGCCTCAGATCCTAGCAAGTATATACGTTATATATATAATCGTGTACATCTCGAGAATGCAACTGTTCGAGCCTGTGCAGTGAGCACTTTGGCGAAGTTTGCTGTCATGGTTGATTCGTTGAAGCCCCGAATATATGTTCTCCTCCGACGATGCCTTTTTGACAGTGATGATGAGGTTCGTGATAGGGCAACCCTTTATCTTAAGACACTTGGAGCAGATGGTTCAGTTCTTGAAAATGAGAAAGACGTGCAAGAAGTTCTTTTTGGCTCTCTAGACTTGCCACTGGGGAATCTAGAGACCAGTTTAAAAAATTATGAGCCTTCTGAAGAACCGTTTGATCTTGATTCTGTACCTAAGGAGATGAAATCCCAGCCACTTGCTGAGAAGAAAGGCAGTGGTAAAAAATCGAATGGGCTTGGGGCTCCTCCCGTTACCCTTGCCTCTTCTGTTGATGCTTATGAAAAGATGCTTCGCTCCATTGAAGAATTTGCTGACTTTGGGAAGCTTTTCAAGTCGTCTGCATCTTTGGAGCTTACAGAGGCAGAAACAGAGTATGCTGTCAATGTTGTCAAGCATATTTTTGATAGACATGTTGTCTTTCAATACAACTGCACAAATACAATTCCTGAGCAGCTACTAGAAAATGTCAATGTTATTGTGGATGCTTCAGAAGCAGAGGAATTCGCGGAAGTAGTGTCCAAGCCGCTCAGATCTCTTCCTTACAATTCACCTGGGCAAACCTTTGTGGCATTTGAGAAGCCAGATGGAGTCGCTGCTGTTGGAAAGTTCTCAAATATGTTGAAGTTCATTGTCAAAGAGATTGATCCGTCTACTGGCGAGACAGAGGACGATGGTGTTGAAGATGAATATCAGCTTGAGGACGTTGAGGTGGTAGCAGCAGATTACATGTTGAAAGTAGCAGTGTCTAACTTCAGGAATGCATGGGAAAGCATGGGTGAAGATGGTGAACGAGTAGATGAATATGGATTAGGTCCGAGGGGGAGCTTGGCTGAAGCTGTGCGTGCTGTCATAGATCTTTTAGGCATGCAGCCTTGTGAGGGCACAGAAGTTGTCCCAAGCAATCTGCGATCACACACATGTTTACTATCTGGTATATTCATTGGAAACGTGAGAGTACTCGCCCGTCTCTCATTTGGTCTTGATGCTTCAAGGGAGGTTGCAATGAAGCTGGTCGTTAGATCTGACGATGGAACAGTCAGTGATCTCATTCACGAGATCATCTCCAGCGGCTAA 4596 48.37 MERQSMNIAKQEGRQWQNNRRRRVSQRRRCRFWSTGQSFSGTIQTTTPLPETLLMSSSSDPPSPSSSDSDPSNPPPSPPPSTAPPPDASPPPPDSSSSSPPPPDSSPPPPPDASSPPPPDASPPPPNDTSPPPGDSSSSPPPPKDSNSNSPPSPPPPPPPPPPPPPPPPPRGSSRHSPPPPRSIDSGSSDSSSGGSAPQAVPIIVGVAVAAGFLLFAMALIFFACTRKKKKQNSNSMYFDEQSGPKGGDPYYNGRNHNWNNPSEHFVNMAPISGGTQGGGWPSPPPPPPPGLLSSDMSSNFSGPHGPPLPPPHPSVALGFNKSTFTYDELMAATSGFSPANLLGQGGFGYVHKGLLPNGKEIAVKSLKTGSGQGDREFAAEVEIISRVHHRHLVSLVGYCIAGDRKMLVYEFVPNNNLEFHLHGKGRPPLDWSTRTKIALGSAKGLAYLHEDYIFSFGVMLLELITGRRPVDTAGEMEDSLVDWSRPLCVKAMSNGNYDELADSRLEKNYDVQEMACMVACAAACIRHSARRRPKMSQVVRALEGDVSLDDLNDGVKPGQSSYFGSGTSSEYDASSYSADMKRFRKVALDSREYASSDYGGTSDEVVKNKPEKVVVKSSPFQSHPPTNFPSNSLPFRSLAASSAMAQPLVKKDDDYDDEEEYSPFLGIEKGTVLQEARVFNDPQLDTRKCSQVITKLLYLLNQGETFTKVEATEVFFGVTKLFQSRDIELRRMVYLMIKELSPSSDDVIIVTSSLMKDMNSKNDMYRANAIRVLCRITDGTLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQTNPEIVKRWSNEVQEAVQSRAPLVQFHALGLLHQIRQNDRLAVNKLVSSLTRGTARSPLAQCLLVRYASQVASESAANSQTGDRPLYDFLDSCLRHKSEMVILEAARAIAELNGVTSREVTPAITVLQLFLNSPKPVLRFAAIRTLNKVAMTHPMAVTNCNIDMESLISDQNRSIATLAITTLLKTGNESSVDRLMKQITNFMSDIADEFKIVVVDAIRSLCLKFPLKYRSLMNFLCNILREEGGFEYKKVIVDSIVILIRDIPEAKENGLLHLCEFIEDCEFTYLSTQILHFLGIEGPKASDPSKYIRYIYNRVHLENATVRACAVSTLAKFAVMVDSLKPRIYVLLRRCLFDSDDEVRDRATLYLKTLGADGSVLENEKDVQEVLFGSLDLPLGNLETSLKNYEPSEEPFDLDSVPKEMKSQPLAEKKGSGKKSNGLGAPPVTLASSVDAYEKMLRSIEEFADFGKLFKSSASLELTEAETEYAVNVVKHIFDRHVVFQYNCTNTIPEQLLENVNVIVDASEAEEFAEVVSKPLRSLPYNSPGQTFVAFEKPDGVAAVGKFSNMLKFIVKEIDPSTGETEDDGVEDEYQLEDVEVVAADYMLKVAVSNFRNAWESMGEDGERVDEYGLGPRGSLAEAVRAVIDLLGMQPCEGTEVVPSNLRSHTCLLSGIFIGNVRVLARLSFGLDASREVAMKLVVRSDDGTVSDLIHEIISSG 1531
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4778874 4801942 - ClCG11G004470.2 Cla11g00420 284242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla11g00420 1531 MobiDBLite consensus disorder prediction 231 310 - -
Cla11g00420 1531 ProSitePatterns Protein kinases ATP-binding region signature. 343 365 IPR017441 GO:0005524
Cla11g00420 1531 Gene3D Transferase(Phosphotransferase) domain 1 414 453 - -
Cla11g00420 1531 Pfam Adaptin N terminal region 670 1184 IPR002553 GO:0006886|GO:0016192|GO:0030117
Cla11g00420 1531 Gene3D Coatomer, gamma subunit, appendage domain 1259 1412 IPR037067 GO:0005198|GO:0006886|GO:0016192|GO:0030126
Cla11g00420 1531 SUPERFAMILY Clathrin adaptor appendage domain 1263 1415 IPR013041 -
Cla11g00420 1531 Gene3D - 1413 1529 IPR012295 -
Cla11g00420 1531 Gene3D Phosphorylase Kinase; domain 1 315 412 - -
Cla11g00420 1531 Pfam Coatomer subunit gamma-1 C-terminal appendage platform 1414 1528 IPR032154 -
Cla11g00420 1531 ProSiteProfiles Protein kinase domain profile. 337 666 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla11g00420 1531 Gene3D Transferase(Phosphotransferase) domain 1 454 553 - -
Cla11g00420 1531 MobiDBLite consensus disorder prediction 67 177 - -
Cla11g00420 1531 Gene3D - 667 960 IPR011989 -
Cla11g00420 1531 MobiDBLite consensus disorder prediction 1221 1243 - -
Cla11g00420 1531 MobiDBLite consensus disorder prediction 30 66 - -
Cla11g00420 1531 SUPERFAMILY ARM repeat 669 1233 IPR016024 -
Cla11g00420 1531 PANTHER COATOMER SUBUNIT GAMMA 645 1531 - -
Cla11g00420 1531 Pfam Coatomer gamma subunit appendage platform subdomain 1266 1411 IPR013040 GO:0005198|GO:0006886|GO:0016192|GO:0030126
Cla11g00420 1531 MobiDBLite consensus disorder prediction 1 198 - -
Cla11g00420 1531 MobiDBLite consensus disorder prediction 1221 1254 - -
Cla11g00420 1531 SUPERFAMILY Subdomain of clathrin and coatomer appendage domain 1416 1527 IPR009028 GO:0006886|GO:0016192|GO:0030117
Cla11g00420 1531 MobiDBLite consensus disorder prediction 179 198 - -
Cla11g00420 1531 SUPERFAMILY Protein kinase-like (PK-like) 312 543 IPR011009 -
Cla11g00420 1531 PANTHER COATOMER SUBUNIT GAMMA 645 1531 IPR017106 -
Cla11g00420 1531 Pfam Protein tyrosine and serine/threonine kinase 342 452 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla11g00420 Cla-Chr11:4778874 Cla07g00865 Cla-Chr7:24038856 1.13E-120 dispersed
Cla01g00248 Cla-Chr1:2511127 Cla11g00420 Cla-Chr11:4778874 2.57E-17 transposed
Cla02g00214 Cla-Chr2:2208769 Cla11g00420 Cla-Chr11:4778874 7.99E-17 transposed
Cla07g01347 Cla-Chr7:30626947 Cla11g00420 Cla-Chr11:4778874 5.39E-07 transposed
Cla11g00420 Cla-Chr11:4778874 Cla02g00528 Cla-Chr2:5442824 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80923 PF01602 Adaptin_N 6.90E-130 CL0020 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla11g00420 K17267 - csv:101213217 1662.89