Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla11g00430 ATGGCTAAGAAGGACGATTCTGCAAGGCCTCCACTTCAGCGCCCCACCATTACTCTGCCGCCGCGCCCTTCTATGGAGGCTTTTTTCGCTGGCGGACCCACTGGAGTTAGCCCTGGCCCGATGACTCTTCTCTCCAGTTACTTCGCCGACGGTGCCGTTGACTCGCCTTCCTTCTCCCAGCTTCTCGCCGGAGCTATGGCCTCTCCGATGGCTATGGGGTTTTTCGGAACTGGGTCCACACCCAATTATTACGCCAAGGATGGAACCGCCTCGGAATTGGAATTTGGGATGAAACAATCGAAGCCGCTGAATTTAGTGGTAGCTCGGCCTCCTTTGTTCTCGGTCCCGCCGGGGCTTAGTCCTTCTGGGTTGCTTAATTCGCCTGGGTTTTATCCTCCTCAGAGTCCATTCGGAATGTCGCACCAGCAAGCATTGGCTCAGGTTACCGCTCAAGCGGCATTGGCAAATTCTCATATGCATATGCAACAAGCTGAATATCAACATTCTTCGGTACCAGCTCCTACAGAACCGTTGACACGGGATCCATCATTTTCTCTTGATGAAGCATCTCAACTGGCCATATTACCCTCCACTTCAGACACAAAAAGTCTGATTGCAGAACCGACAGAAGTCTCTCACCCTGACAGAAAATATCAACCTCCTCCTCCTCACGTCTCTGATAAACCTGCAGATGATGGCTATAATTGGCGTAAATATGGACAGAAGTTGGTTAAGGGCAGTGAATATCCCCGAAGCTATTACAAATGCACTCATTTGAATTGCCCTGTAAAAAAGAAGATTGAGCGCTCACCTGATGGTCAAATTACTGAAATTATTTACAAAGGACAGCACAACCACGAACCTCCTCCAGCCAACAAACGTGCAAGAGATAATAGTGAACCGAGTGGATGTACAAATTCTTTGATGAAGCCTGAATGTGGTTTGCAAAATCAAGCTGGAATTTTGAACAAGTCAAGTGAAAATGTGCAATTAGGGTCTAGTGACAGTGAAGAACGAGCTGATACAGAGATAACAGATGACAGAGATGAAGATGAGCCAAATCCAAAGAGGCAGAACATTGACGCAGGGACATCTGGTGTTGCCTTGTCACATAAAACCCTCACAGAACCAAAAATCATTGTTCAAACAAGAAGTGAGGTTGACCTGTTAGATGACGGTTATAGGTGGCGCAAGTACGGGCAGAAAGTGGTTAAAGGAAATCCTAACCCTAGGAGCTACTACAAATGCACTAGTGCTGGGTGCAACGTCCGAAAGCATGTTGAGAGATCTTCAACAGACTCGAAAGCTGTTGTTACTACATACGAAGGGAAACATAACCATGATGTTCCTGCAGCTAGAAACAGCAGCCACCACACGGTCAACAATACTGTCCCCCAGATCAAACCACACAAAGTTGTAGCTCAGAAACATCCATTACTTAAAGAGATGGAATATGGAACTAATGACCAGAGACCTGCCGTTTTGCGGCTTAAAGAAGAGCAAATCACCGTGTAA 1515 47.0 MAKKDDSARPPLQRPTITLPPRPSMEAFFAGGPTGVSPGPMTLLSSYFADGAVDSPSFSQLLAGAMASPMAMGFFGTGSTPNYYAKDGTASELEFGMKQSKPLNLVVARPPLFSVPPGLSPSGLLNSPGFYPPQSPFGMSHQQALAQVTAQAALANSHMHMQQAEYQHSSVPAPTEPLTRDPSFSLDEASQLAILPSTSDTKSLIAEPTEVSHPDRKYQPPPPHVSDKPADDGYNWRKYGQKLVKGSEYPRSYYKCTHLNCPVKKKIERSPDGQITEIIYKGQHNHEPPPANKRARDNSEPSGCTNSLMKPECGLQNQAGILNKSSENVQLGSSDSEERADTEITDDRDEDEPNPKRQNIDAGTSGVALSHKTLTEPKIIVQTRSEVDLLDDGYRWRKYGQKVVKGNPNPRSYYKCTSAGCNVRKHVERSSTDSKAVVTTYEGKHNHDVPAARNSSHHTVNNTVPQIKPHKVVAQKHPLLKEMEYGTNDQRPAVLRLKEEQITV 504
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4957420 4962716 - ClCG11G004580.1 Cla11g00430 284252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla11g00430 504 Gene3D WRKY domain 375 451 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cla11g00430 504 Gene3D WRKY domain 223 290 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cla11g00430 504 MobiDBLite consensus disorder prediction 195 234 - -
Cla11g00430 504 MobiDBLite consensus disorder prediction 281 311 - -
Cla11g00430 504 SUPERFAMILY WRKY DNA-binding domain 227 289 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cla11g00430 504 MobiDBLite consensus disorder prediction 326 369 - -
Cla11g00430 504 ProSiteProfiles WRKY domain profile. 385 450 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cla11g00430 504 Pfam WRKY DNA -binding domain 391 447 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cla11g00430 504 Pfam WRKY DNA -binding domain 231 287 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cla11g00430 504 ProSiteProfiles WRKY domain profile. 225 289 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cla11g00430 504 SMART WRKY_cls 390 449 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cla11g00430 504 SMART WRKY_cls 230 288 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cla11g00430 504 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 331 503 IPR044810 GO:0003700
Cla11g00430 504 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 9 325 IPR044810 GO:0003700
Cla11g00430 504 SUPERFAMILY WRKY DNA-binding domain 382 450 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cla11g00430 504 MobiDBLite consensus disorder prediction 1 32 - -
Cla11g00430 504 PANTHER WRKY TRANSCRIPTION FACTOR 73 9 325 - -
Cla11g00430 504 PANTHER WRKY TRANSCRIPTION FACTOR 73 331 503 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla10g00433 Cla-Chr10:5809593 Cla11g00430 Cla-Chr11:4957420 8.99E-18 dispersed
Cla10g02125 Cla-Chr10:36911290 Cla11g00430 Cla-Chr11:4957420 3.69E-79 transposed
Cla11g00430 Cla-Chr11:4957420 Cla05g02414 Cla-Chr5:35653311 1.86E-142 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62010 PF03106 WRKY 3.20E-25 CL0274 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla11g00430 - - csv:101223114 963.755