Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla11g00434 ATGCCTTCTCTCCTCTCACCTTCTTCCATGTGGAGCGAGCTTTGCCTGAGGCCAACACCACCTCCACTCAATGCCACCGATGAAACCCCCGTCGAATGCTACGCCTGCACTCAAGTCGGCGTTCCAGCCTTCCACTCCACCAGCTGCGACCACGCTCACCAGCAACCCGAATGGGAAGCCTCCGCGGGTTCTTCCCTCGTTCCCATTCAACCCACCAAACCCTCCCCGTCTCGCCGCCCCGCACTGCCACATCCTTCCGGTTGCTTCGGCACCGTTCTCGACCCGAGAACCAAGCCGGTTCAAAGATGGAACCGGGTTCTGTTATTGGCCCGTGGAATGGCTCTCGCTGTTGATCCTCTTTACTTCTACGCTCTGTCTATCGGAAGAGGAGGCTCCCCCTGCCTCTACATGGACGGTGGATTGGCCGCCGTCGTCACCGTCCTCCGCACGTGCCTCGATTTCGTTCACTTGTGGCACGTTTGGCTTCAATTCCGCCTCGCTTACGTGTCCAAAGAGAGTATGGTGATTGGCTGTGGGAAGCTCGTGTGGGACGCACGTGCTATCGCCTCTCATTACGTTCGTTCCTTCAAAGGCTTCTGGTTTGATGCCTTTGTCATCCTCCCTGTTCCTCAGATTGTTTATTGGTTTGTTTTACCAAAACTGATCAGAGAAGAGAGAATAAAACTTATAATGACAGTTGTCTTATTAATGTTCTTGTTCCAATTCCTCCCAAAAGTTTACCACTCCATTATTTTAATGAGAAGAATGCAGAAGGTCACTGGATACATCTTCGGCACCATTTGGTGGGGTTTTGGCCTCAATCTCATTGCCTATTTCATTGCTTCTCATGTTGCTGGGGGTTGCTGGTATGTTCTTGCAATACAACGAGTTGCTTCTTGCATCCAGCAACATTGTGAGAGAAACAAGTGCAATCTATCTCTGTCTTGCTCTGAGGAGGTGTGTTATCAGTTTCTCTCATCAGCGACAACAATTGAAAGTTCGTGTGGTCGTAATTCGACTGCTACATTTAGGAAGCCACTATGCTTGGATGTTAAAGGTCCATTCGCCTATGGCATCTACAAGTGGGCTCTTCCAGTCATTTCCAGCAATTCAGTAGCGGTCAAAATCCTTTATCCCATCTTTTGGGGATTAATGACTCTCAGCACCTTTGGCAATGATCTGGAGCCTACCAGTAATTGGCTCGAAGTATGCTTCAGTATTTGCACGGTGCTAAGTGGACTGCTGCTTTTCACTCTTTTGATTGGTAATATCCAGGTTCTTTTGCACGCTGTCATGGCAAGGAGGCGGAAAATGCAGCTGAGATGTCGAGATTTGGAGTGGTGGATGAGGAGACGACAATTGCCATCTCGTTTGAGGCAACGAGTTCGACACTACGAACACCAAAGATGGGCAGCCATGGGCGGAGAAGATGAGATGGAACTAATCAATGATTTGCCCGAAGGTCTTCGAAGAGACATTAAACGTCATCTTTGTGTTGATCTAATCAGAAAGGTGCCTCTCTTCCAAAACCTGGAGGAGCTGATTCTAGACAACATATGTGATCGAGTCAAGCCACTTGTATTCTCCAAAGATGAAAAGATTATCAGAGAAGGGGATCCTGTTCCAAGGATGTTGTTCATAGTGTGTGGACGAGTAAAACGTAGCCAAAGCCTAAGCAAGGGTATGACAGCAACAAGTTGGATTGAACCAGGAGGATTTCTTGGCGATGAGCTGCTATCGTGGTGTCTTCGGCGCCCATTTCTGGAGAGACTTCCAGCTTCATCCGCTACATTTGTTTGCATTGAACCAACAGAAGCATTTGCCCTGAAAGCAGACCATCTGAAGTACATAACCGATCACTTCCGGTACAAATTCGCGAACGAGAGACTGAAGAGAACTGCAAGATATTACTCCTCCAACTGGAGAACATGGGCTGCTGTGAACATACAATTCGCGTGGCGTCGATACCGAAAGAGGATGAGACGGCCAGTGATAGCCGTGGTGGAAAATGGAAGCAATGAACGTAGGCTTTTGCAGTATGCTGCAATGTTCATGTCATTCAGGCCACATGACCATCTTGAATAG 2085 48.49 MPSLLSPSSMWSELCLRPTPPPLNATDETPVECYACTQVGVPAFHSTSCDHAHQQPEWEASAGSSLVPIQPTKPSPSRRPALPHPSGCFGTVLDPRTKPVQRWNRVLLLARGMALAVDPLYFYALSIGRGGSPCLYMDGGLAAVVTVLRTCLDFVHLWHVWLQFRLAYVSKESMVIGCGKLVWDARAIASHYVRSFKGFWFDAFVILPVPQIVYWFVLPKLIREERIKLIMTVVLLMFLFQFLPKVYHSIILMRRMQKVTGYIFGTIWWGFGLNLIAYFIASHVAGGCWYVLAIQRVASCIQQHCERNKCNLSLSCSEEVCYQFLSSATTIESSCGRNSTATFRKPLCLDVKGPFAYGIYKWALPVISSNSVAVKILYPIFWGLMTLSTFGNDLEPTSNWLEVCFSICTVLSGLLLFTLLIGNIQVLLHAVMARRRKMQLRCRDLEWWMRRRQLPSRLRQRVRHYEHQRWAAMGGEDEMELINDLPEGLRRDIKRHLCVDLIRKVPLFQNLEELILDNICDRVKPLVFSKDEKIIREGDPVPRMLFIVCGRVKRSQSLSKGMTATSWIEPGGFLGDELLSWCLRRPFLERLPASSATFVCIEPTEAFALKADHLKYITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQFAWRRYRKRMRRPVIAVVENGSNERRLLQYAAMFMSFRPHDHLE 694
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 5006657 5012707 - ClCG11G004620.2 Cla11g00434 284256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla11g00434 694 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 2-LIKE 37 694 - -
Cla11g00434 694 Gene3D - 137 431 - -
Cla11g00434 694 ProSiteProfiles cAMP/cGMP binding motif profile. 507 586 IPR000595 -
Cla11g00434 694 CDD CAP_ED 507 614 IPR000595 -
Cla11g00434 694 Gene3D Jelly Rolls 505 623 IPR014710 -
Cla11g00434 694 SUPERFAMILY cAMP-binding domain-like 434 621 IPR018490 -
Cla11g00434 694 MobiDBLite consensus disorder prediction 60 84 - -
Cla11g00434 694 SUPERFAMILY Voltage-gated potassium channels 95 429 - -
Cla11g00434 694 Pfam Ion transport protein 103 426 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Cla11g00434 694 Gene3D Helix hairpin bin 433 498 - -
Cla11g00434 694 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 37 694 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla07g01624 Cla-Chr7:33577644 Cla11g00434 Cla-Chr11:5006657 0 dispersed
Cla10g00605 Cla-Chr10:9002173 Cla11g00434 Cla-Chr11:5006657 0 dispersed
Cla11g00434 Cla-Chr11:5006657 Cla06g01285 Cla-Chr6:26208231 1.86E-128 dispersed
Cla11g00434 Cla-Chr11:5006657 Cla01g00052 Cla-Chr1:416897 6.05E-130 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla11g00434 K05391 - csv:101203560 1331.62