Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla11g00459 ATGAATGCGAATAGTCCGCGATTTCAATCGTTTGGTCAAACTGAGATTAACTGGGACAAGCTTGATAAAGCGAAATTTTATGGCGTAGGAGCTGGTCTCTTTACAGGAATTACAGTTGCACTGTACCCTGTTTCTGTTGTAAAAACAAGGATGCAGGTTGCTGTAAAGGATTCTGCCGAGAAAAATGCCCTGTCTGTTATTAAGGGCTTACTGAAGAATGACGGGGTTCCTGGTCTTTACAGAGGGTTTGGCACAGTAATAACTGGTGCAATTCCTGCCAGGATTATCTTTCTTACTGCTTTGGAGACAACCAAAGTGGGAGCCTATAAACTGGTTGAGCCATTTAAATTTTCTGAACCTACACAGGCTGCTATGGCAAATGGGTTAGCTGGCATGACTGCCTCACTTTTTTCTCAAGCTGTTTTTGTTCCAATTGATGTGATTAGTCAGAAGCTCATGGTTCAAGGATACTCAGGAAATACAAGATATAATGGGGGTTTAGATGTTGCTCGTAAACTGATAAAGTCTAATGGGATCCGGGGATTGTATAAAGGTTTTGGGTTATCTGTTATGACCTACTCTCCATCTAGTGCTGTATGGTGGGCAAGTTATGGTGCAAGTCAACGCATCATCTGGAGGCACTGTAAAGTGCATCTCTGTATGGATTTGTTGAGCTTTATATATAAGTGTCAAAACTCTGCTTCTGAGAAATTTGCTCCCAGCCATACCCAACTTATTTCAGTTCAAGCTGCGGGTGGAATAATTGCAGGTGCAACAGCTTCCTGCATTACAACACCTTTGGACACCATAAAGACTCGCTTACAGGTACTTACTACCCTAGTTGACGTCAAACTTAATTCTTTTCACTTTCTCACTGTGATGGGTGATAAAGGGAAGACAGCAAGACAAATTGTTGAAAGCTTGATCGCTGAGGATGGATGGAAAGGTTTATATAGGGGGCTGGGTCCTCGGTTTTTCAGCATGTCAGCCTGGGGAACCTCGATGATATTGGCTTACGAGTACTTGAGTATGGACTTCTCACTATTATAG 1050 42.48 MNANSPRFQSFGQTEINWDKLDKAKFYGVGAGLFTGITVALYPVSVVKTRMQVAVKDSAEKNALSVIKGLLKNDGVPGLYRGFGTVITGAIPARIIFLTALETTKVGAYKLVEPFKFSEPTQAAMANGLAGMTASLFSQAVFVPIDVISQKLMVQGYSGNTRYNGGLDVARKLIKSNGIRGLYKGFGLSVMTYSPSSAVWWASYGASQRIIWRHCKVHLCMDLLSFIYKCQNSASEKFAPSHTQLISVQAAGGIIAGATASCITTPLDTIKTRLQVLTTLVDVKLNSFHFLTVMGDKGKTARQIVESLIAEDGWKGLYRGLGPRFFSMSAWGTSMILAYEYLSMDFSLL 349
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 5202512 5209376 - ClCG11G004900.2 Cla11g00459 284281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla11g00459 349 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN J 1 343 - -
Cla11g00459 349 ProSiteProfiles Solute carrier (Solcar) repeat profile. 19 107 IPR018108 -
Cla11g00459 349 Gene3D Mitochondrial carrier domain 26 347 IPR023395 -
Cla11g00459 349 ProSiteProfiles Solute carrier (Solcar) repeat profile. 244 345 IPR018108 -
Cla11g00459 349 PRINTS Mitochondrial carrier protein signature 183 201 IPR002067 GO:0055085
Cla11g00459 349 PRINTS Mitochondrial carrier protein signature 39 53 IPR002067 GO:0055085
Cla11g00459 349 PRINTS Mitochondrial carrier protein signature 253 275 IPR002067 GO:0055085
Cla11g00459 349 Pfam Mitochondrial carrier protein 124 212 IPR018108 -
Cla11g00459 349 Pfam Mitochondrial carrier protein 28 106 IPR018108 -
Cla11g00459 349 Pfam Mitochondrial carrier protein 250 342 IPR018108 -
Cla11g00459 349 ProSiteProfiles Solute carrier (Solcar) repeat profile. 122 210 IPR018108 -
Cla11g00459 349 SUPERFAMILY Mitochondrial carrier 19 342 IPR023395 -
Cla11g00459 349 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN 1 343 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g00729 Cla-Chr5:6913770 Cla11g00459 Cla-Chr11:5202512 7.12E-92 dispersed
Cla09g00079 Cla-Chr9:769376 Cla11g00459 Cla-Chr11:5202512 2.67E-84 dispersed
Cla11g00459 Cla-Chr11:5202512 Cla04g00684 Cla-Chr4:21617124 1.90E-09 dispersed
Cla11g00459 Cla-Chr11:5202512 Cla05g01857 Cla-Chr5:30443758 3.31E-77 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla11g00459 K15121 - csv:101206140 565.459