Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla11g00466 ATGGTTTGGCTTCTCATTTTACTTCTTCTCAATTTGAGTTTCTTTGATCTTTCTGAGGCTAGGCATCACAGGAAGCTCCCTTCGGCCGTCGTTGTCGGTACCGTCTTCTGCGACACATGCTTTCAAGAGAAATTTTCCAAGACCAGTCACTTCATTTCAGTGGCTGCAACAGCAAAATCATCTTCCCTTCAACTCAAGTCAAAAAAACAAGGCGCACACACATTCTCAGCTGGCTTCTTCACTTTCAAGCCTCTAAAACAACCAAACCTTTGCAACCAAAAGCCTCAATATTCCAACACATTTGATGACATGAAACAAGTCCTCCCCGCGCCCCCACCGTTCGACTTCCCGAGCTTGCCATCTCCTATCCAAAACCCGTCCGTGCCGAACGTTCCTCGGATTTACGATAACCTTCCTCCTCTCCCATTGCTTCCTGGCCTTCTTCCATTGCCTCCATTGCCTCCATTGCCACCACTCCCTCCTCTTCCACCTCTCCCTGGCTTTCCACTGTTCCCACCAAAAAAGAATGATGAAAATAATGTACCAAATGAAATTCCAAACACAAGTGCAAAACAACATCAGTTTCATCCACAGACTTTGCTTCCAATGCCACCCATTAAGCCTTTGAAAAGGCCACATTTTTTTGGTCTGCCTCCACACAGGCTGCACCACCACTACCCTCTCTTGCCTCCATTCTCAACTCATACGGCAGCTGCAGCGGGGGCCGGTTTCTCTGTCCTCCACCCACCACCGAAGATCGTATTCTCTTTCGGTCTTCTCTTCTCTTCTCCCTCCACTTTACTCCTCTCTCAAGCTTGGTTTGCTATTGATATCTTTATGGCATCTCTTTTTCTCATCACCGAAGGAAAGAATCCGGTGTTTTCAGAGGTGATGACATTAGCATTCATCACAGTTGCTTTGAGGATAATCCCTTTGGATCCCCATGTCTTTAACCTTACTGAACATAGGCTGCTAATTTTACAGGAGTTTGGCACAATGGGTGCTGTCTGCTGCTGTTTGAGCGTGGAGGATTTTGAAGACTATGTTAATCCTAATAGTTCAGTATATAGGAATTGCACCTGTCTTAGTTGCTTCATTCAGAGTTTCTTAAATGCATACACATTGATTTTTCGAAGAGGAGAAGTGCATTCTGTCTCTTCATCAATTCAAGGGGCAACATCCATGAATTCCACAGCATCGACAGATAACTCTTTATCTGAAATGTACCGCTCACCTCCAAGGCCATTGCCTTATGATGCTGATCCCAGATATATCCGCTTGCAGCGGGATGGATTAATTTCTAGGCGAGAGAAGGGGTCAAGCCATTTACATGAAGAGTCAGAACCTTTAAGAAGTGATGTGGATACCGATTCAGATTCTTTGGGCTCAGCAGGCAAATGGAATGGTTCTGCTTGTCTTGAGGAATCTAAAGAAAACCTTGGCAAATCATCTCTAAAGTTCCCTTCAACTAAATCTACCACTGGACTTGGGTATTCTTATACATCCTCCGAAGATGAGGATGTCTGTCCAACGTGTCTTGAAGAATATACTTCAGAGAATCCCAAGATAGTGACAAAATGCTCTCATCATTTTCACCTTGGATGTATCTATGAGTGGATGGAGAGAAGTGATAACTGTCCAGTTTGTGGCAAGGGGAAGCTACACTCGCCCTTAGATTCAGACCCAGGAGACACCATGGAAGGACTTTTATATCTGAAGGTTCAAACGCTTGTCTTCTGGGTAGTGATTCCAAATCATGTTAGAGGTGGAATTAGCTTGCCTGTGACCTAG 1791 44.78 MVWLLILLLLNLSFFDLSEARHHRKLPSAVVVGTVFCDTCFQEKFSKTSHFISVAATAKSSSLQLKSKKQGAHTFSAGFFTFKPLKQPNLCNQKPQYSNTFDDMKQVLPAPPPFDFPSLPSPIQNPSVPNVPRIYDNLPPLPLLPGLLPLPPLPPLPPLPPLPPLPGFPLFPPKKNDENNVPNEIPNTSAKQHQFHPQTLLPMPPIKPLKRPHFFGLPPHRLHHHYPLLPPFSTHTAAAAGAGFSVLHPPPKIVFSFGLLFSSPSTLLLSQAWFAIDIFMASLFLITEGKNPVFSEVMTLAFITVALRIIPLDPHVFNLTEHRLLILQEFGTMGAVCCCLSVEDFEDYVNPNSSVYRNCTCLSCFIQSFLNAYTLIFRRGEVHSVSSSIQGATSMNSTASTDNSLSEMYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLHEESEPLRSDVDTDSDSLGSAGKWNGSACLEESKENLGKSSLKFPSTKSTTGLGYSYTSSEDEDVCPTCLEEYTSENPKIVTKCSHHFHLGCIYEWMERSDNCPVCGKGKLHSPLDSDPGDTMEGLLYLKVQTLVFWVVIPNHVRGGISLPVT 596
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 5306900 5316421 - ClCG11G004970.2 Cla11g00466 284288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla11g00466 596 SUPERFAMILY RING/U-box 503 551 - -
Cla11g00466 596 MobiDBLite consensus disorder prediction 435 455 - -
Cla11g00466 596 MobiDBLite consensus disorder prediction 388 421 - -
Cla11g00466 596 ProSiteProfiles Zinc finger RING-type profile. 509 549 IPR001841 -
Cla11g00466 596 MobiDBLite consensus disorder prediction 435 461 - -
Cla11g00466 596 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 333 551 - -
Cla11g00466 596 Pfam Ring finger domain 508 549 IPR001841 -
Cla11g00466 596 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 333 551 - -
Cla11g00466 596 MobiDBLite consensus disorder prediction 388 408 - -
Cla11g00466 596 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 489 553 IPR013083 -
Cla11g00466 596 SMART ring_2 509 549 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g00158 Cla-Chr5:1460651 Cla11g00466 Cla-Chr11:5306900 5.17E-21 dispersed
Cla10g01720 Cla-Chr10:32988877 Cla11g00466 Cla-Chr11:5306900 1.77E-10 dispersed
Cla11g00466 Cla-Chr11:5306900 Cla05g00960 Cla-Chr5:9597153 2.59E-07 dispersed
Cla11g00466 Cla-Chr11:5306900 Cla01g00249 Cla-Chr1:2527795 5.89E-25 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla11g00466 - - csv:101207736 440.654