Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla11g00478 | ATGGGAATGAAGAGAACTGAGGCTATTGTTTCCTGTCTTGTGGCTTCTTTATTGTTTTGGGCTTCTGCAATAAATGGCTTGTTATCTCCCAAAGGTGTTAACTATGAAGTTCAAGCTTTGATGGGTATAAAAGCTTCTCTTCAAGATCCCCATGGTGTGCTTGAGAATTGGGATGGGGATTCTGTTGACCCATGTAGTTGGACTATGGTTACTTGCTCTCCTGAGAGCCTTGTCATTGGCTTAGGGACTCCAAGCCAGAACCTGTCTGGGACTCTTTCTCCAACCATTGGGAATTTGACAAACCTTCAAATTGTGCTGTTGCAGAACAACAATATAACAGGCCCAATTCCCCCAGAGCTTGGGAGGCTCTCAAAGCTCCAAACACTTGACCTATCAAACAATTTCTTCACAGGGGAAATTCCTTCTCCTTTAGGCCATTTGAGAAGCCTACAGTACTTGAGGCTTAACAACAACAGTCTTTCTGGGGTAATTCCAATGTCTTTAGCTAACATGACACAACTTGCCTTTCTTGATGTGTCTTATAATAATATCAGTGGCCCTCTGCCTAGATTTCCCAGCAAAACATTCAACATTGTTGGGAACCCTCTGATTTGTGCAACTGGGTCCGAGGCCGGTTGCCACGGTACAACTCTAATGCCCATGTCCATGAATTTGAACAGTACACAAACTGGTTTACCTGCTGTGAAATTGAAGAGTCATAAAATGGCCCTTACATTTGGCTTGAGCCTAGCTTGCCTATGTCTGATTGTTCTTGTATTTGGACTGTTCATATGGTGGAGAAAACGAAGCAATCAACCTACATTCTTCGATGTAAAAGACCAACAACATGAGGAAATTTCGCTTGGAAATCTGAGAAGGTTCCAATTTAGAGAACTTCAGATAGCAACAAACAATTTCAGCAGCAAGAACATACTAGGAAAGGGAGGTTTTGGAAATGTTTACAAAGGAATTCTTTCAGATGGAACGGTTGTTGCTGTTAAAAGGCTCAAAGATGGCAATGCAAGCAGAGGCGAAATCCAGTTTCAGACTGAAGTTGAGATGATCAGCCTAGCCGTGCACCGTCATCTCCTCAGATTATACGGATTTTGCAACACACCAACTGAAAGGCTTCTTGTTTACCCATATATGTCGAATGGAAGTGTTGCATCACGTCTCAAAGGAAAACCGGTATTAGACTGGGGAACAAGGAAGAGGATTGCTATAGGAGCTGCAAGGGGATTGTTATACCTACATGAACAGTGTGACCCAAAGATAATACATAGAGATGTTAAGGCTGCAAACATATTGCTTGATGACTACTGCGAGGCTGTCGTCGGAGATTTCGGGTTAGCAAAGCTTCTGGATCATCAAGATTCACATGTCACAACTGCTGTGAGAGGCACCGTGGGACATATAGCTCCTGAGTATCTATCCACCGGACAGTCCTCCGAGAAAACGGATGTTTTCGGCTTTGGAATCCTACTCCTTGAACTGATCACAGGGCAGAGAGCCCTTGAGTTTGGCAAAGCAGCTAATCAGAAAGGAGGCATTCTTGACTGGGTGAAGAAGATTCACCTAGAGAAGAAGCTGGAAATGTTAGTGGACAAGGATCTGAAAGCCAACTATGACAGAGTTGAACTAGAGGAGATGGTTCAAGTGGCTTTATTGTGCACACAATACCTACCAGGACATAGACCTAAGATGTCAGAAGTTGTCAGAATGCTTGAAGGAGAAGGGCTTGCTGTGAGATGGGAAGCTTCTCAGAGAGTTGACTCAACAAAGTGCAAACCCCATGATTTCTCTTCCTCAGACAGATACTCTGATCTCACAGATGATTCATCATTGTTGGTTCAAGCCATGGAGCTCTCTGGTCCAAGGTGA | 1881 | 43.75 | MGMKRTEAIVSCLVASLLFWASAINGLLSPKGVNYEVQALMGIKASLQDPHGVLENWDGDSVDPCSWTMVTCSPESLVIGLGTPSQNLSGTLSPTIGNLTNLQIVLLQNNNITGPIPPELGRLSKLQTLDLSNNFFTGEIPSPLGHLRSLQYLRLNNNSLSGVIPMSLANMTQLAFLDVSYNNISGPLPRFPSKTFNIVGNPLICATGSEAGCHGTTLMPMSMNLNSTQTGLPAVKLKSHKMALTFGLSLACLCLIVLVFGLFIWWRKRSNQPTFFDVKDQQHEEISLGNLRRFQFRELQIATNNFSSKNILGKGGFGNVYKGILSDGTVVAVKRLKDGNASRGEIQFQTEVEMISLAVHRHLLRLYGFCNTPTERLLVYPYMSNGSVASRLKGKPVLDWGTRKRIAIGAARGLLYLHEQCDPKIIHRDVKAANILLDDYCEAVVGDFGLAKLLDHQDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGQRALEFGKAANQKGGILDWVKKIHLEKKLEMLVDKDLKANYDRVELEEMVQVALLCTQYLPGHRPKMSEVVRMLEGEGLAVRWEASQRVDSTKCKPHDFSSSDRYSDLTDDSSLLVQAMELSGPR | 626 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 5471599 | 5475071 | - | ClCG11G005100.2 | Cla11g00478 | 284300 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla11g00478 | 626 | ProSitePatterns | Protein kinases ATP-binding region signature. | 312 | 334 | IPR017441 | GO:0005524 | |
Cla11g00478 | 626 | Pfam | Protein kinase domain | 307 | 573 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cla11g00478 | 626 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 425 | 437 | IPR008271 | GO:0004672|GO:0006468 | |
Cla11g00478 | 626 | PANTHER | PROTEIN NSP-INTERACTING KINASE 1-LIKE ISOFORM X1 | 7 | 626 | - | - | |
Cla11g00478 | 626 | Pfam | Leucine rich repeat N-terminal domain | 34 | 73 | IPR013210 | - | |
Cla11g00478 | 626 | Pfam | Leucine rich repeat | 125 | 184 | IPR001611 | GO:0005515 | |
Cla11g00478 | 626 | PANTHER | SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 | 7 | 626 | - | - | |
Cla11g00478 | 626 | SUPERFAMILY | L domain-like | 35 | 305 | - | - | |
Cla11g00478 | 626 | Gene3D | Transferase(Phosphotransferase) domain 1 | 383 | 595 | - | - | |
Cla11g00478 | 626 | SMART | serkin_6 | 306 | 575 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cla11g00478 | 626 | Gene3D | Ribonuclease Inhibitor | 33 | 215 | IPR032675 | - | |
Cla11g00478 | 626 | ProSiteProfiles | Protein kinase domain profile. | 306 | 561 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cla11g00478 | 626 | SUPERFAMILY | Protein kinase-like (PK-like) | 282 | 576 | IPR011009 | - | |
Cla11g00478 | 626 | Gene3D | Phosphorylase Kinase; domain 1 | 275 | 382 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla01g00725 | Cla-Chr1:8419245 | Cla11g00478 | Cla-Chr11:5471599 | 0 | dispersed | |
Cla08g01742 | Cla-Chr8:29908666 | Cla11g00478 | Cla-Chr11:5471599 | 0 | dispersed | |
Cla10g00296 | Cla-Chr10:3870206 | Cla11g00478 | Cla-Chr11:5471599 | 1.08E-64 | dispersed | |
Cla10g00875 | Cla-Chr10:20028784 | Cla11g00478 | Cla-Chr11:5471599 | 0 | dispersed | |
Cla01g02327 | Cla-Chr1:37065220 | Cla11g00478 | Cla-Chr11:5471599 | 0 | transposed | |
Cla03g00806 | Cla-Chr3:10134870 | Cla11g00478 | Cla-Chr11:5471599 | 1.20E-24 | transposed | |
Cla06g01266 | Cla-Chr6:25917869 | Cla11g00478 | Cla-Chr11:5471599 | 0 | transposed | |
Cla07g01653 | Cla-Chr7:33796996 | Cla11g00478 | Cla-Chr11:5471599 | 1.68E-22 | transposed | |
Cla09g01811 | Cla-Chr9:35672910 | Cla11g00478 | Cla-Chr11:5471599 | 3.18E-88 | transposed | |
Cla11g00478 | Cla-Chr11:5471599 | Cla05g02357 | Cla-Chr5:35159817 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
80927 | PF00069 | Pkinase | 5.80E-44 | CL0016 | Cla | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla11g00478 | - | - | csv:101209443 | 1219.91 |