Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla11g00478 ATGGGAATGAAGAGAACTGAGGCTATTGTTTCCTGTCTTGTGGCTTCTTTATTGTTTTGGGCTTCTGCAATAAATGGCTTGTTATCTCCCAAAGGTGTTAACTATGAAGTTCAAGCTTTGATGGGTATAAAAGCTTCTCTTCAAGATCCCCATGGTGTGCTTGAGAATTGGGATGGGGATTCTGTTGACCCATGTAGTTGGACTATGGTTACTTGCTCTCCTGAGAGCCTTGTCATTGGCTTAGGGACTCCAAGCCAGAACCTGTCTGGGACTCTTTCTCCAACCATTGGGAATTTGACAAACCTTCAAATTGTGCTGTTGCAGAACAACAATATAACAGGCCCAATTCCCCCAGAGCTTGGGAGGCTCTCAAAGCTCCAAACACTTGACCTATCAAACAATTTCTTCACAGGGGAAATTCCTTCTCCTTTAGGCCATTTGAGAAGCCTACAGTACTTGAGGCTTAACAACAACAGTCTTTCTGGGGTAATTCCAATGTCTTTAGCTAACATGACACAACTTGCCTTTCTTGATGTGTCTTATAATAATATCAGTGGCCCTCTGCCTAGATTTCCCAGCAAAACATTCAACATTGTTGGGAACCCTCTGATTTGTGCAACTGGGTCCGAGGCCGGTTGCCACGGTACAACTCTAATGCCCATGTCCATGAATTTGAACAGTACACAAACTGGTTTACCTGCTGTGAAATTGAAGAGTCATAAAATGGCCCTTACATTTGGCTTGAGCCTAGCTTGCCTATGTCTGATTGTTCTTGTATTTGGACTGTTCATATGGTGGAGAAAACGAAGCAATCAACCTACATTCTTCGATGTAAAAGACCAACAACATGAGGAAATTTCGCTTGGAAATCTGAGAAGGTTCCAATTTAGAGAACTTCAGATAGCAACAAACAATTTCAGCAGCAAGAACATACTAGGAAAGGGAGGTTTTGGAAATGTTTACAAAGGAATTCTTTCAGATGGAACGGTTGTTGCTGTTAAAAGGCTCAAAGATGGCAATGCAAGCAGAGGCGAAATCCAGTTTCAGACTGAAGTTGAGATGATCAGCCTAGCCGTGCACCGTCATCTCCTCAGATTATACGGATTTTGCAACACACCAACTGAAAGGCTTCTTGTTTACCCATATATGTCGAATGGAAGTGTTGCATCACGTCTCAAAGGAAAACCGGTATTAGACTGGGGAACAAGGAAGAGGATTGCTATAGGAGCTGCAAGGGGATTGTTATACCTACATGAACAGTGTGACCCAAAGATAATACATAGAGATGTTAAGGCTGCAAACATATTGCTTGATGACTACTGCGAGGCTGTCGTCGGAGATTTCGGGTTAGCAAAGCTTCTGGATCATCAAGATTCACATGTCACAACTGCTGTGAGAGGCACCGTGGGACATATAGCTCCTGAGTATCTATCCACCGGACAGTCCTCCGAGAAAACGGATGTTTTCGGCTTTGGAATCCTACTCCTTGAACTGATCACAGGGCAGAGAGCCCTTGAGTTTGGCAAAGCAGCTAATCAGAAAGGAGGCATTCTTGACTGGGTGAAGAAGATTCACCTAGAGAAGAAGCTGGAAATGTTAGTGGACAAGGATCTGAAAGCCAACTATGACAGAGTTGAACTAGAGGAGATGGTTCAAGTGGCTTTATTGTGCACACAATACCTACCAGGACATAGACCTAAGATGTCAGAAGTTGTCAGAATGCTTGAAGGAGAAGGGCTTGCTGTGAGATGGGAAGCTTCTCAGAGAGTTGACTCAACAAAGTGCAAACCCCATGATTTCTCTTCCTCAGACAGATACTCTGATCTCACAGATGATTCATCATTGTTGGTTCAAGCCATGGAGCTCTCTGGTCCAAGGTGA 1881 43.75 MGMKRTEAIVSCLVASLLFWASAINGLLSPKGVNYEVQALMGIKASLQDPHGVLENWDGDSVDPCSWTMVTCSPESLVIGLGTPSQNLSGTLSPTIGNLTNLQIVLLQNNNITGPIPPELGRLSKLQTLDLSNNFFTGEIPSPLGHLRSLQYLRLNNNSLSGVIPMSLANMTQLAFLDVSYNNISGPLPRFPSKTFNIVGNPLICATGSEAGCHGTTLMPMSMNLNSTQTGLPAVKLKSHKMALTFGLSLACLCLIVLVFGLFIWWRKRSNQPTFFDVKDQQHEEISLGNLRRFQFRELQIATNNFSSKNILGKGGFGNVYKGILSDGTVVAVKRLKDGNASRGEIQFQTEVEMISLAVHRHLLRLYGFCNTPTERLLVYPYMSNGSVASRLKGKPVLDWGTRKRIAIGAARGLLYLHEQCDPKIIHRDVKAANILLDDYCEAVVGDFGLAKLLDHQDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGQRALEFGKAANQKGGILDWVKKIHLEKKLEMLVDKDLKANYDRVELEEMVQVALLCTQYLPGHRPKMSEVVRMLEGEGLAVRWEASQRVDSTKCKPHDFSSSDRYSDLTDDSSLLVQAMELSGPR 626
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 5471599 5475071 - ClCG11G005100.2 Cla11g00478 284300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla11g00478 626 ProSitePatterns Protein kinases ATP-binding region signature. 312 334 IPR017441 GO:0005524
Cla11g00478 626 Pfam Protein kinase domain 307 573 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla11g00478 626 ProSitePatterns Serine/Threonine protein kinases active-site signature. 425 437 IPR008271 GO:0004672|GO:0006468
Cla11g00478 626 PANTHER PROTEIN NSP-INTERACTING KINASE 1-LIKE ISOFORM X1 7 626 - -
Cla11g00478 626 Pfam Leucine rich repeat N-terminal domain 34 73 IPR013210 -
Cla11g00478 626 Pfam Leucine rich repeat 125 184 IPR001611 GO:0005515
Cla11g00478 626 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 7 626 - -
Cla11g00478 626 SUPERFAMILY L domain-like 35 305 - -
Cla11g00478 626 Gene3D Transferase(Phosphotransferase) domain 1 383 595 - -
Cla11g00478 626 SMART serkin_6 306 575 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla11g00478 626 Gene3D Ribonuclease Inhibitor 33 215 IPR032675 -
Cla11g00478 626 ProSiteProfiles Protein kinase domain profile. 306 561 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla11g00478 626 SUPERFAMILY Protein kinase-like (PK-like) 282 576 IPR011009 -
Cla11g00478 626 Gene3D Phosphorylase Kinase; domain 1 275 382 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00725 Cla-Chr1:8419245 Cla11g00478 Cla-Chr11:5471599 0 dispersed
Cla08g01742 Cla-Chr8:29908666 Cla11g00478 Cla-Chr11:5471599 0 dispersed
Cla10g00296 Cla-Chr10:3870206 Cla11g00478 Cla-Chr11:5471599 1.08E-64 dispersed
Cla10g00875 Cla-Chr10:20028784 Cla11g00478 Cla-Chr11:5471599 0 dispersed
Cla01g02327 Cla-Chr1:37065220 Cla11g00478 Cla-Chr11:5471599 0 transposed
Cla03g00806 Cla-Chr3:10134870 Cla11g00478 Cla-Chr11:5471599 1.20E-24 transposed
Cla06g01266 Cla-Chr6:25917869 Cla11g00478 Cla-Chr11:5471599 0 transposed
Cla07g01653 Cla-Chr7:33796996 Cla11g00478 Cla-Chr11:5471599 1.68E-22 transposed
Cla09g01811 Cla-Chr9:35672910 Cla11g00478 Cla-Chr11:5471599 3.18E-88 transposed
Cla11g00478 Cla-Chr11:5471599 Cla05g02357 Cla-Chr5:35159817 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80927 PF00069 Pkinase 5.80E-44 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla11g00478 - - csv:101209443 1219.91