Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla11g00502 ATGGCTTCACCTTCTCCAAGTATTTCTCCTCCTGAGAATCCATCAGATTCCTCAGTTTCTTCACCTCCTTCTCCTTCTTCTCCGGTGGAGTCTGCAACCTCTCCCTCGTCTCCCACATCTTCTGAGCCTAATCAGACTGGTGAACCTCCTTCATCACTTTCTAGTTCTTCAGCTCCACCTCCTCAGTCACCACCGGCTGTTCCTGATGCTCCTCCTCCTTCTCCTCCATTGTCTCCTCCTCCATTGACAGCATCACCACCTGCAACACCAGCATCCCCACCTCCTTCTCCCCCTGCTGGTTCACCACCTTCACCTCCCCAATCTTCGCCCTCGCCGCCATCACCTCCGCCACCTTCAACACCATCCTCCCCACCACCACCACCACCTTCAACATCAACCTCTCCACCACCACCTTCCACAACATCACCACCACCTTCCTCTGCATCACCACCTCCCCCAGAGAGATCAACTACCTCTCCTCCTCCTCAAACTTCACCTCCCCCTCCTGATTTATCACCTCCACCGCCACCAGCAGCAGCAGATGGTTCTCCACCTCCTGCATCCAATCCTAGACCTCCATCTTCAACGCCCTCTCCCCCTCCCCCTGATACAATTTCACCTTCTCCACCTCCACCAACTAATGTCCCAACACCACCTTCATCAACAGGAGAATCACCTAAAGTATCTCCCCCATCCCACAAGGCTTCTCCTCCTCCTTCTGATTCTCAAACTCCACCTTCAGATAACTCCCCTCCACCAAGATCCACAGTACCATCACCTCCTTCTTCAGTTCCTTCATCGTCTGCTCCTCCTCCAGTTAGTGACCCTGGTTCTCCAACTAATTCATCTGGTGGAACTCCTGTTACCCCTCCAACTTCTGTTACACCAGAACGACCAATTGCAACAATCAATGGTACCAATGTTACAGCAAATAACTCAACCACTAGCAAGGGGGGTTTCAGCACTGGAGCATCTGTGGCAGTTGGCAGTGTGGTTGGTGTTCTAGTGCTGAGTCTTGTTATCATGGCTCTGTGGTTTGTTCAGAAACGGAAGAGAAGAAAGAAGAATATCCCTTACACCATAGCTTCTCCTTTTTCCTCGCAAAACTCAGCTCCTGTAGTAGGAAGTCGTACTGATAGTGATTTCAAGTATTCATCATCGGAAGGAGGTGGAGTAGGTAATTCGAGATCGTTTGCTTATGATGACCTACACCAGGCAACAAGTGGGTTTTCATCGAATAATCTTTTGGGGGAAGGTGGATTTGGTTGTGTGTATAAAGGCACCCTTGCAGATGGAAGAGACGTGGCTGTTAAACAACTTAAAGTGGGTGGTGGACAGGGAGAACGAGAGTTCAGAGCCGAAGTTGAGATTATTAGCCGAGTACACCATCGACATTTGGTTTCCCTGGTTGGTTACTGTATCTCTGATTATCAAAGATTGCTTGTCTACGATTATGTTCCAAACAATACCCTTCATTACCATCTACACGGGGAGAACAGGCCAGTTTTGGCTTGGGCTACACGTGTTCGGATTGCTGCTGGTGCAGCTCGTGGAATTGCTTACCTACATGAAGATTGTAAGTTTCTCCCTTTGGACATTCTGCAAACTTGGAGGTTTCCAACTAATGCTGTAGGTTTAGGTAGTAATCCGTTGAAATTTGTTGAGGCGTGCATAAAGTCGGGTCATCCACGCATTATTCACAGGGATATTAAATCGTCTAACATTCTGCTTGATATCAACTTTGAAGCTCAGGTCGCAGATTTTGGGCTTGCTAAATTGGCACTGGATTCACATACTCATGTAACAACTCGTGTTATGGGAACCTTTGGATACATGGCCCCAGAGTACGCAACGAGTGGGAAATTGACAGATAAATCTGATGTTTTCTCTTTCGGGGTTGTACTTTTGGAGTTAATTACTGGTCGCAAGCCTGTGGATTCTTCTCAGCCTCTAGGGGATGAGAGCTTAGTTGAATGGATTCTTAGTTTCTACATTAATCCCAACACTCTTAGATCTTGGTTGAGGTTGTTCTTGACTGAACAAATGGGGCTGTTGGCTCGACCCTTGCTTGCACAAGCCATTGAGGATGAGAATTTTGAAGAACTGGTGGATCCAAGGCTAGACAACAATTATGTAGACAGAGAAATGTTCCGGATGATCGAAGCAGCCGCTGCTTGTGTTCGTCATTCGGCAGTAAAGAGGCCAAGAATGAGTCAGGTGGTGAGAGCTCTAGACTCTTTAGATGAAATGTCAGATCTTGCAAATGGGGTGAAACCTGGGCAGAGTGGAGTGTTTGATTCAGCTGAACAATCTGCTCAGATTAGAATGTTTCAGAGAATGGCTTTTGGCAGTCAAGATTATAGTTACGGTTATTCCGAACGAGATCGCAGTCGAAGTTATAGTCAAAGTCATAGTAGCTGGAGTAGAGAATCCAGAGATCAAAGTCCCTCGGCGCCTATGAATCGATCCCGGCAATGGAACATCTGA 2487 47.57 MASPSPSISPPENPSDSSVSSPPSPSSPVESATSPSSPTSSEPNQTGEPPSSLSSSSAPPPQSPPAVPDAPPPSPPLSPPPLTASPPATPASPPPSPPAGSPPSPPQSSPSPPSPPPPSTPSSPPPPPPSTSTSPPPPSTTSPPPSSASPPPPERSTTSPPPQTSPPPPDLSPPPPPAAADGSPPPASNPRPPSSTPSPPPPDTISPSPPPPTNVPTPPSSTGESPKVSPPSHKASPPPSDSQTPPSDNSPPPRSTVPSPPSSVPSSSAPPPVSDPGSPTNSSGGTPVTPPTSVTPERPIATINGTNVTANNSTTSKGGFSTGASVAVGSVVGVLVLSLVIMALWFVQKRKRRKKNIPYTIASPFSSQNSAPVVGSRTDSDFKYSSSEGGGVGNSRSFAYDDLHQATSGFSSNNLLGEGGFGCVYKGTLADGRDVAVKQLKVGGGQGEREFRAEVEIISRVHHRHLVSLVGYCISDYQRLLVYDYVPNNTLHYHLHGENRPVLAWATRVRIAAGAARGIAYLHEDCKFLPLDILQTWRFPTNAVGLGSNPLKFVEACIKSGHPRIIHRDIKSSNILLDINFEAQVADFGLAKLALDSHTHVTTRVMGTFGYMAPEYATSGKLTDKSDVFSFGVVLLELITGRKPVDSSQPLGDESLVEWILSFYINPNTLRSWLRLFLTEQMGLLARPLLAQAIEDENFEELVDPRLDNNYVDREMFRMIEAAAACVRHSAVKRPRMSQVVRALDSLDEMSDLANGVKPGQSGVFDSAEQSAQIRMFQRMAFGSQDYSYGYSERDRSRSYSQSHSSWSRESRDQSPSAPMNRSRQWNI 828
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 5689932 5696690 + ClCG11G005260.1 Cla11g00502 284324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla11g00502 828 MobiDBLite consensus disorder prediction 1 313 - -
Cla11g00502 828 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 136 527 - -
Cla11g00502 828 MobiDBLite consensus disorder prediction 54 277 - -
Cla11g00502 828 MobiDBLite consensus disorder prediction 790 828 - -
Cla11g00502 828 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK8 136 527 - -
Cla11g00502 828 CDD STKc_IRAK 416 747 - -
Cla11g00502 828 SMART serkin_6 410 690 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla11g00502 828 ProSitePatterns Protein kinases ATP-binding region signature. 416 438 IPR017441 GO:0005524
Cla11g00502 828 MobiDBLite consensus disorder prediction 278 313 - -
Cla11g00502 828 ProSitePatterns Serine/Threonine protein kinases active-site signature. 565 577 IPR008271 GO:0004672|GO:0006468
Cla11g00502 828 MobiDBLite consensus disorder prediction 12 53 - -
Cla11g00502 828 Pfam Protein tyrosine and serine/threonine kinase 413 524 IPR001245 GO:0004672|GO:0006468
Cla11g00502 828 Gene3D Transferase(Phosphotransferase) domain 1 486 759 - -
Cla11g00502 828 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 562 798 - -
Cla11g00502 828 Pfam Protein kinase domain 564 648 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla11g00502 828 MobiDBLite consensus disorder prediction 801 828 - -
Cla11g00502 828 SUPERFAMILY Protein kinase-like (PK-like) 393 744 IPR011009 -
Cla11g00502 828 Gene3D Phosphorylase Kinase; domain 1 381 485 - -
Cla11g00502 828 ProSiteProfiles Protein kinase domain profile. 410 732 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla11g00502 828 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK8 562 798 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla07g00865 Cla-Chr7:24038856 Cla11g00502 Cla-Chr11:5689932 2.53E-126 dispersed
Cla11g00221 Cla-Chr11:2548037 Cla11g00502 Cla-Chr11:5689932 4.90E-143 dispersed
Cla11g00502 Cla-Chr11:5689932 Cla03g01496 Cla-Chr3:30528622 9.78E-87 dispersed
Cla11g00502 Cla-Chr11:5689932 Cla05g02353 Cla-Chr5:35102124 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80928 PF00069 Pkinase 1.60E-21 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla11g00502 - - csv:101211665 835.099