Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla11g00542 ATGAAAAGGCTACTGGGGTTGTTCTTCTTGTTCGTTGTGGTTCCAGTGTTGGTGAGATCTCTGAACCCACCTCTGAACGACGACGTTTTGGGGCTGATTGTGTTCAAGGCTGACATTGAAGATCCTAAAGGGAAACTTGCTTCGTGGAATGAAGATGACGATAACCCATGTAATTGGGTTGGTGTAAAATGCAACCCCAGATCCAATAGAGTTGTTGAGCTCAATCTTGATGGCTTTTCTCTCAATGGCAGGCTTGGCCGTGGTCTTCTTCAGTTGCAGTTTCTTCGTAAACTCTCTCTTTCGAACAACAATCTTACTGGAAATTTAAGTCCTAATAATGCTCGCTTTGAAAATCTTCGAGTGGTCGATTTAAGCGGCAACGGTTTTCATGGGATGATTCCGGATGATTTCTTCCGGCAATGTGGGTCGTTGAGAGTAATCTCTTTGGCTAAGAACAAATTTTCAGGGAATATCCCGGAAAGTTTGGGCTCTTGTTCCAGTCTTGCTGCTGTTAATTTGTCTTCTAATCAGTTTTCAGGTTCATTGCCTTCTGGGATTTGGTCCTTGACCGGGCTTCGATCTTTGGATTTGTCTGATAATGTGTTAGAAGGTGAAATTCCACCGGAAGTGAAGGGTATGAATAATTTGCGAGCTATTAATTTGGGGAAGAATCGGTTTTCTGGACAGATCCCAGATGGGATTGGGAGTTGTTTGCTCTTGAGGTCTGTTGATCTCAGTGAGAATTCTTTCTCCGGTGACGTTCCGGCGACAATGCAGAAGCTTAGTTTATGCAGTACTCTTAATTTAAGAAGAAACTCATTTGAAGGGAAGGTTCCTGAATGGATTGGTGGAATGGATGGCCTTGAAATCTTGGACCTTTCTGGGAATAGATTTTCTGGTCCGGTTCCAAGTTCATTTGGGAATCTTCAAAAACTGAAGGTTTTGAATTTTTCTGAAAATGGTTTAACTGGTAGCTTGGCTGAATCCATACTTCCTTCTCAAAACCTTTCAGCCATGGAGCCCGGCCGTGGTTCTCTCACTGGTGTTCTTCCGGCCTGGATTCTGAAGCTGGGTTCGCAAAATGTATTGCCTTCTGATATCAAAAGAAGCTCTCTTTCTACAACTGTGGGAAAAGCTCTTGTTAATCTTCAAGTTTTAGATTTGTCTCACAATGCACTTTCTGGTGAAATTTCACCTGATATTGGGATATTAAGTAACTTGCAGGTGTTAAACCTATGTAAGAACTCATTTGTTGGGACTGTTCCAGAGAGTATTGGAGGCTTGAAGGCCTTGGTTTTTCTTGACTTGAGTGAGAACCAGTTGAATGGAACCATTCCCGAAACACTCGGCGGAGACATATCATTGAAAGAAGTGAGACTGGAGAAGAACTTGCTGGAGGGTGAAGTTCCAAAATCAATTGGGAACTGTTCTTCACTTGTAACTTTGGACATATCGGAAAACAGATTAACTGGCTCCATACCAGCAGAATTGTCTCAACTGATCAATCTTCAAATTGTGGACTTGTCAACAAACAATCTCAGTGGTGCACTGCCAAAACAGTTGGCCAATCTTCCTAACCTTCTTTTGTTTAACATTTCTCGCAACAATCTGCAAGGCGAACTGCCTGCAGGTGGCTTTTTCAATACAATCTCTCCTTCCTCTGTGGCTGGAAATCCTTCCATTTGTGGTTCTATTGTCAAGAAGTCTTGCCCTGGCGTCCTCCCAAAGCCTATTGTTCTCAATCCCAACTCATCTTCTGACTCTGGTTCTCCTTCATTACCTTCAACTCTTGGTCACAAAAGAATCATCCTCAGCATCTCTGCACTCATTGCTATTGGTGCAGCTGCTGTTATCCTCGTCGGTGTAGTTGCAATCACCGTCATTAACCTCCATGTTCGATCGTCTGCAAATCGTCCTGAAGCAGCCATCACGTTCTCAGGAGGGGATGACTTCAGCCACTCCCCAACTACGGATGCTAATTCTGGCAAGCTCGTCATGTTCTCGGGAGAGCCTGACTTTAGTACCGGTGCACATGCCCTCCTTAACAAGGATTGTGAGCTTGGCCGTGGTGGATTTGGAGCGGTTTACCAGACTGTTCTTCGTGATGGGCATCCGGTTGCAATAAAAAAGCTCACCGTTTCAAGTCTTGTCAAATCTCAAGAAGAGTTTGAAAGGGAGGTTAAGAAGTTGGGGAAGGTTAGGCACCAAAATCTTGTGGCTCTAGAAGGTTATTACTGGACACCATCTCTACAGCTCCTCATATATGAATTTGTTTCTGGAGGGAGTTTGTATAAACAGCTTCATGAAGGATTGGGTGGAAACATCCTCTCATGGAATGAAAGGTTCAACATAATCCTTGGAACTGCGAAAAGCTTGGCACATTTGCACCAAATGAACATCATCCACTACAATATAAAATCAAGCAATGTCCTGATTGATAGTTCAGGTGAACCTAAAGTTGGAGATTTTGGCCTAGCAAGATTGTTACCAATGCTTGATCGGTACGTGTTGAGCAGCAAGATACAGAGCGCACTCGGATACATGGCACCTGAGTTTGCCTGCAAAACAGTTAAGATAACAGAGAAATGTGATGTGTATGGGTTTGGAGTTCTGGTTCTTGAGGTGGTAACTGGGAAGAGACCTGTAGAGTACATGGAAGACGATGTGGTGGTACTCTGCGACATGGTTCGACGGGCGCTGGAAGAAGGTCGGGTAGAGGAATGCATTGATGGGAGGCTCCAGAGGAATTTTCCATCAGAGGAGGCCATACCAGTAGTGAAACTAGGCTTGATTTGCACTTCTCAGGTGCCATCAAACCGACCTGATATGGCAGAGGTTGTTAATATATTAGAGCTTATCAGATGTCCATCAGAAGGCCAAGAAGAATTGGGATAA 2895 44.01 MKRLLGLFFLFVVVPVLVRSLNPPLNDDVLGLIVFKADIEDPKGKLASWNEDDDNPCNWVGVKCNPRSNRVVELNLDGFSLNGRLGRGLLQLQFLRKLSLSNNNLTGNLSPNNARFENLRVVDLSGNGFHGMIPDDFFRQCGSLRVISLAKNKFSGNIPESLGSCSSLAAVNLSSNQFSGSLPSGIWSLTGLRSLDLSDNVLEGEIPPEVKGMNNLRAINLGKNRFSGQIPDGIGSCLLLRSVDLSENSFSGDVPATMQKLSLCSTLNLRRNSFEGKVPEWIGGMDGLEILDLSGNRFSGPVPSSFGNLQKLKVLNFSENGLTGSLAESILPSQNLSAMEPGRGSLTGVLPAWILKLGSQNVLPSDIKRSSLSTTVGKALVNLQVLDLSHNALSGEISPDIGILSNLQVLNLCKNSFVGTVPESIGGLKALVFLDLSENQLNGTIPETLGGDISLKEVRLEKNLLEGEVPKSIGNCSSLVTLDISENRLTGSIPAELSQLINLQIVDLSTNNLSGALPKQLANLPNLLLFNISRNNLQGELPAGGFFNTISPSSVAGNPSICGSIVKKSCPGVLPKPIVLNPNSSSDSGSPSLPSTLGHKRIILSISALIAIGAAAVILVGVVAITVINLHVRSSANRPEAAITFSGGDDFSHSPTTDANSGKLVMFSGEPDFSTGAHALLNKDCELGRGGFGAVYQTVLRDGHPVAIKKLTVSSLVKSQEEFEREVKKLGKVRHQNLVALEGYYWTPSLQLLIYEFVSGGSLYKQLHEGLGGNILSWNERFNIILGTAKSLAHLHQMNIIHYNIKSSNVLIDSSGEPKVGDFGLARLLPMLDRYVLSSKIQSALGYMAPEFACKTVKITEKCDVYGFGVLVLEVVTGKRPVEYMEDDVVVLCDMVRRALEEGRVEECIDGRLQRNFPSEEAIPVVKLGLICTSQVPSNRPDMAEVVNILELIRCPSEGQEELG 964
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 6152622 6156387 + ClCG11G005650.1 Cla11g00542 284364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla11g00542 964 Gene3D Transferase(Phosphotransferase) domain 1 758 962 - -
Cla11g00542 964 ProSiteProfiles Protein kinase domain profile. 681 953 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla11g00542 964 SUPERFAMILY RNI-like 249 549 - -
Cla11g00542 964 Gene3D Ribonuclease Inhibitor 284 573 IPR032675 -
Cla11g00542 964 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE IRK-RELATED 2 955 - -
Cla11g00542 964 Gene3D Phosphorylase Kinase; domain 1 674 757 - -
Cla11g00542 964 CDD STKc_IRAK 687 953 - -
Cla11g00542 964 SUPERFAMILY L domain-like 44 354 - -
Cla11g00542 964 Pfam Leucine rich repeat N-terminal domain 26 65 IPR013210 -
Cla11g00542 964 SUPERFAMILY Protein kinase-like (PK-like) 684 954 IPR011009 -
Cla11g00542 964 Pfam Leucine rich repeat 454 513 IPR001611 GO:0005515
Cla11g00542 964 Pfam Leucine rich repeat 382 441 IPR001611 GO:0005515
Cla11g00542 964 Pfam Leucine rich repeat 240 298 IPR001611 GO:0005515
Cla11g00542 964 Pfam Leucine rich repeat 118 178 IPR001611 GO:0005515
Cla11g00542 964 SMART LRR_typ_2 380 404 IPR003591 -
Cla11g00542 964 SMART LRR_typ_2 116 140 IPR003591 -
Cla11g00542 964 SMART LRR_typ_2 285 308 IPR003591 -
Cla11g00542 964 SMART LRR_typ_2 213 237 IPR003591 -
Cla11g00542 964 SMART LRR_typ_2 500 523 IPR003591 -
Cla11g00542 964 SMART LRR_typ_2 189 212 IPR003591 -
Cla11g00542 964 SMART LRR_typ_2 428 452 IPR003591 -
Cla11g00542 964 SMART LRR_typ_2 524 548 IPR003591 -
Cla11g00542 964 SMART LRR_typ_2 309 333 IPR003591 -
Cla11g00542 964 PRINTS Leucine-rich repeat signature 192 205 - -
Cla11g00542 964 PRINTS Leucine-rich repeat signature 380 393 - -
Cla11g00542 964 Gene3D Ribonuclease Inhibitor 26 183 IPR032675 -
Cla11g00542 964 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 2 955 - -
Cla11g00542 964 Gene3D Ribonuclease Inhibitor 184 281 IPR032675 -
Cla11g00542 964 Pfam Protein kinase domain 684 947 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla11g00542 964 ProSitePatterns Protein kinases ATP-binding region signature. 687 710 IPR017441 GO:0005524
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla07g00487 Cla11g00542 CCT
Cla07g00487 Cla11g00542 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla07g01500 Cla-Chr7:32238769 Cla11g00542 Cla-Chr11:6152622 0 dispersed
Cla11g00542 Cla-Chr11:6152622 Cla01g01963 Cla-Chr1:34272640 3.93E-132 dispersed
Cla01g00690 Cla-Chr1:8128779 Cla11g00542 Cla-Chr11:6152622 1.28E-70 transposed
Cla03g00580 Cla-Chr3:6547616 Cla11g00542 Cla-Chr11:6152622 9.42E-15 transposed
Cla10g02150 Cla-Chr10:37115218 Cla11g00542 Cla-Chr11:6152622 0 wgd
Cla11g00542 Cla-Chr11:6152622 Cla07g00487 Cla-Chr7:6924354 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80929 PF00069 Pkinase 3.00E-41 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla11g00542 - - csv:101217024 1732.23