Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla11g00546 ATGGCCATCTCACCATTCTCTTCTCTTTCAATCTTCTTCCTTATTTTCCTTCCTGCAATCTCAGCCGATTACGGCCACGCCACCTTCTATGGCGGCGGAGACGCTTCCGGCACAATGGGTGGGGCTTGTGGGTATGGGAATTTGTACAGTCAAGGATATGGGACGAACACGGCGGCGCTAAGTACTGCTCTGTTCAACAATGGGCTGAGCTGTGGCTCTTGTTATGAAATCACTTGCAATAGTGATCCTAAATGGTGTCTTCCTGGAAAAATCATCGTCACTGCCACTAATTTCTGTCCACCAAACTTTGCTCTGTCCAACGACAATGGCGGCTGGTGCAACCCTCCTCTGCAGCACTTCGACTTGGCGGAGCCGGCTTTTCTCCAAATCGCTCAATACCGTGCTGGAATCGTCCCTGTTTCCTTCCAAAGAGTACCATGTATGAAGAAGGGAGGAATCAGATTCACCATTAACGGACATTCATACTTCAACTTGGTTCTGATCACCAACGTGGGCGGCGCCGGCGACGTTCACTCAGTGTCGATCAAAGGTTCGAAAACAGGATGGCAAGCCATGTCCAGAAATTGGGGACAGAATTGGCAGAGCAACAATTACTTGAACGGACAGAGTCTCTCTTTCCAAGTCACCACCAGCGACGGCCGTACCGTCACCAGCTACGACGCCGTTCCGGCCAACTGGCAATTTGGCCAGACGTTCGAGGGAAGCCAATTCTAA 735 50.88 MAISPFSSLSIFFLIFLPAISADYGHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEITCNSDPKWCLPGKIIVTATNFCPPNFALSNDNGGWCNPPLQHFDLAEPAFLQIAQYRAGIVPVSFQRVPCMKKGGIRFTINGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNNYLNGQSLSFQVTTSDGRTVTSYDAVPANWQFGQTFEGSQF 244
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 6206278 6207716 + ClCG11G005690.1 Cla11g00546 284368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla11g00546 244 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 162 241 IPR007117 -
Cla11g00546 244 PANTHER EXPANSIN 23 244 - -
Cla11g00546 244 SUPERFAMILY Barwin-like endoglucanases 12 170 IPR036908 -
Cla11g00546 244 SUPERFAMILY PHL pollen allergen 149 241 IPR036749 -
Cla11g00546 244 SMART dpbb_1 57 142 IPR007112 -
Cla11g00546 244 PRINTS Expansin signature 52 66 IPR002963 GO:0009664
Cla11g00546 244 PRINTS Expansin signature 79 90 IPR002963 GO:0009664
Cla11g00546 244 PRINTS Expansin signature 91 101 IPR002963 GO:0009664
Cla11g00546 244 PRINTS Expansin signature 110 127 IPR002963 GO:0009664
Cla11g00546 244 PRINTS Expansin signature 127 140 IPR002963 GO:0009664
Cla11g00546 244 PRINTS Expansin signature 151 163 IPR002963 GO:0009664
Cla11g00546 244 PRINTS Expansin signature 163 184 IPR002963 GO:0009664
Cla11g00546 244 PRINTS Expansin signature 198 219 IPR002963 GO:0009664
Cla11g00546 244 PRINTS Expansin signature 227 243 IPR002963 GO:0009664
Cla11g00546 244 Pfam Expansin C-terminal domain 153 230 IPR007117 -
Cla11g00546 244 Gene3D - 151 244 IPR036749 -
Cla11g00546 244 Pfam Lytic transglycolase 57 142 IPR009009 -
Cla11g00546 244 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 40 152 IPR007112 -
Cla11g00546 244 PANTHER EXPANSIN-A15 23 244 IPR002963 GO:0009664
Cla11g00546 244 Gene3D - 19 148 IPR036908 -
Cla11g00546 244 PRINTS Expansin/Lol pI family signature 21 36 IPR007118 GO:0005576
Cla11g00546 244 PRINTS Expansin/Lol pI family signature 39 57 IPR007118 GO:0005576
Cla11g00546 244 PRINTS Expansin/Lol pI family signature 61 79 IPR007118 GO:0005576
Cla11g00546 244 PRINTS Expansin/Lol pI family signature 135 151 IPR007118 GO:0005576
Cla11g00546 244 PRINTS Expansin/Lol pI family signature 189 203 IPR007118 GO:0005576
Cla11g00546 244 PRINTS Expansin/Lol pI family signature 227 241 IPR007118 GO:0005576
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla07g00480 Cla11g00546 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g02431 Cla-Chr5:35815273 Cla11g00546 Cla-Chr11:6206278 1.07E-139 dispersed
Cla08g01405 Cla-Chr8:26945619 Cla11g00546 Cla-Chr11:6206278 1.29E-115 dispersed
Cla11g00546 Cla-Chr11:6206278 Cla11g00693 Cla-Chr11:8177039 2.22E-129 dispersed
Cla11g00546 Cla-Chr11:6206278 Cla07g00480 Cla-Chr7:6785317 9.49E-150 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla11g00546 - K20628 csv:101217496 489.574