Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla11g00556 | CACTCCCTTTCTTTCCCAAGTTTCTTTCTTTCTTTCTTCTTCTTCTTCTTCTTCATCTCAAAAATCTCCCCTTTTCTCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCATTCCATTCCATTGTACCAGAAAATTTAGCAGAGAATTGCAACAGGTCGATGAGACCGGGAAGAAAATAAAGAGGGAAATTGATCAAAGTTTTTATGATCCATTAATGGGAAGAAGACATATTTTAAGTCCAAGTACTGGGACGACATTGAATACAATAACGCCATGTGCAGCTTGTAAGCTTTTAAGAAGAAGATGTGCTCAAGAATGTCCATTTTCTCCATATTTTTCTCCACATGAACCCCAAAAATTTGCTTCGGTTCATAAGGTTTTTGGTGCAAGCAACGTGGCTAAGATGCTAATGGAGGTACCGGAGAGTCAAAGAGCGGACGCAGCAAACAGCCTTGTTTATGAAGCAAATCTAAGGCTAAGAGATCCCGTGTATGGTTGCATGGGAGTCATTTCTGCTCTCCAACACCAACTTCATACTTTACAATCTGACCTCAATTCCATCAGAACTCAGATTTTCAACTTCAAATTTACACAACATAATAATTCACACATTCCTAATTTCATTTCCGCCGCCGCAACCCCGCCTGCAGCCCCGCCGACTCCGCCACATTCTCAGCCGCCTCCCCTCTCTCTTCCGCCCCCTCTTCCTTCCTCCTCTTCCATCTTTTCATCTCCTATTATCACTACTACTACTGCTGCCCCTGAATTAATTAACCCCATCTCAACAACTCAACATATCTCCTACTTTGGT | 861 | 41.58 | HSLSFPSFFLSFFFFFFFISKISPFLSSSSSSSSSSSSSSSSSSSSSSSSSSSIPFHCTRKFSRELQQVDETGKKIKREIDQSFYDPLMGRRHILSPSTGTTLNTITPCAACKLLRRRCAQECPFSPYFSPHEPQKFASVHKVFGASNVAKMLMEVPESQRADAANSLVYEANLRLRDPVYGCMGVISALQHQLHTLQSDLNSIRTQIFNFKFTQHNNSHIPNFISAAATPPAAPPTPPHSQPPPLSLPPPLPSSSSIFSSPIITTTTAAPELINPISTTQHISYFG | 287 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 6297484 | 6300143 | + | ClCG11G005800.1 | Cla11g00556 | 284378 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla11g00556 | 287 | Pfam | Lateral organ boundaries (LOB) domain | 108 | 204 | IPR004883 | - | |
Cla11g00556 | 287 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 85 | 287 | - | - | |
Cla11g00556 | 287 | MobiDBLite | consensus disorder prediction | 225 | 252 | - | - | |
Cla11g00556 | 287 | PANTHER | BNAA03G19070D PROTEIN | 85 | 287 | - | - | |
Cla11g00556 | 287 | MobiDBLite | consensus disorder prediction | 229 | 252 | - | - | |
Cla11g00556 | 287 | ProSiteProfiles | LOB domain profile. | 107 | 208 | IPR004883 | - | |
Cla11g00556 | 287 | Coils | Coil | 187 | 207 | - | - | |
Cla11g00556 | 287 | MobiDBLite | consensus disorder prediction | 30 | 55 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla11g00556 | Cla-Chr11:6297484 | Cla02g01814 | Cla-Chr2:33227293 | 4.07E-49 | dispersed | |
Cla11g00556 | Cla-Chr11:6297484 | Cla07g00463 | Cla-Chr7:6349989 | 1.30E-79 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
62016 | PF03195 | LOB | 3.10E-40 | No_clan | Cla | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla11g00556 | - | - | csv:101214467 | 268.47 |