Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla11g00556 CACTCCCTTTCTTTCCCAAGTTTCTTTCTTTCTTTCTTCTTCTTCTTCTTCTTCATCTCAAAAATCTCCCCTTTTCTCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCATTCCATTCCATTGTACCAGAAAATTTAGCAGAGAATTGCAACAGGTCGATGAGACCGGGAAGAAAATAAAGAGGGAAATTGATCAAAGTTTTTATGATCCATTAATGGGAAGAAGACATATTTTAAGTCCAAGTACTGGGACGACATTGAATACAATAACGCCATGTGCAGCTTGTAAGCTTTTAAGAAGAAGATGTGCTCAAGAATGTCCATTTTCTCCATATTTTTCTCCACATGAACCCCAAAAATTTGCTTCGGTTCATAAGGTTTTTGGTGCAAGCAACGTGGCTAAGATGCTAATGGAGGTACCGGAGAGTCAAAGAGCGGACGCAGCAAACAGCCTTGTTTATGAAGCAAATCTAAGGCTAAGAGATCCCGTGTATGGTTGCATGGGAGTCATTTCTGCTCTCCAACACCAACTTCATACTTTACAATCTGACCTCAATTCCATCAGAACTCAGATTTTCAACTTCAAATTTACACAACATAATAATTCACACATTCCTAATTTCATTTCCGCCGCCGCAACCCCGCCTGCAGCCCCGCCGACTCCGCCACATTCTCAGCCGCCTCCCCTCTCTCTTCCGCCCCCTCTTCCTTCCTCCTCTTCCATCTTTTCATCTCCTATTATCACTACTACTACTGCTGCCCCTGAATTAATTAACCCCATCTCAACAACTCAACATATCTCCTACTTTGGT 861 41.58 HSLSFPSFFLSFFFFFFFISKISPFLSSSSSSSSSSSSSSSSSSSSSSSSSSSIPFHCTRKFSRELQQVDETGKKIKREIDQSFYDPLMGRRHILSPSTGTTLNTITPCAACKLLRRRCAQECPFSPYFSPHEPQKFASVHKVFGASNVAKMLMEVPESQRADAANSLVYEANLRLRDPVYGCMGVISALQHQLHTLQSDLNSIRTQIFNFKFTQHNNSHIPNFISAAATPPAAPPTPPHSQPPPLSLPPPLPSSSSIFSSPIITTTTAAPELINPISTTQHISYFG 287
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 6297484 6300143 + ClCG11G005800.1 Cla11g00556 284378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla11g00556 287 Pfam Lateral organ boundaries (LOB) domain 108 204 IPR004883 -
Cla11g00556 287 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 85 287 - -
Cla11g00556 287 MobiDBLite consensus disorder prediction 225 252 - -
Cla11g00556 287 PANTHER BNAA03G19070D PROTEIN 85 287 - -
Cla11g00556 287 MobiDBLite consensus disorder prediction 229 252 - -
Cla11g00556 287 ProSiteProfiles LOB domain profile. 107 208 IPR004883 -
Cla11g00556 287 Coils Coil 187 207 - -
Cla11g00556 287 MobiDBLite consensus disorder prediction 30 55 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla11g00556 Cla-Chr11:6297484 Cla02g01814 Cla-Chr2:33227293 4.07E-49 dispersed
Cla11g00556 Cla-Chr11:6297484 Cla07g00463 Cla-Chr7:6349989 1.30E-79 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62016 PF03195 LOB 3.10E-40 No_clan Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla11g00556 - - csv:101214467 268.47