Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla11g00574 ATGGTCGAGAAAATGGCTCTCAGTGATCAATATTCTGATGCAATTTCTTTACCTAAAAATTCGATCAGGAAGAGGAAGTCACGGAGTAGACGAGATCGATCGACCGTGGCTGAGACTCTTGCTAAGTGGAAAGCTTATAATGAATGTTTTGATTCTTGTAATGATGGAAGCAAGCCAATTCGTAAAGCTCCAGCAAAAGGGTCTAAGAAGGGATGTATGAAAGGTAAGGGAGGACCCTTGAATTCACATTGCAATTACAGAGGTGTGAGACAGAGGACTTGGGGCAAATGGGTTGCAGAGATTCGTGAACCCAATAGGGGGAGTAGGCTTTGGCTTGGTACTTTCCCCACTGCCATTGAAGCTGCTCTCGCCTACGACGAGGCTGCGAGGACGATGTACGGTCACAGTGCTCGTTTAAACCTTCCCAACATTAAAAACAGAGGGCAACTACAAGGGATTCTTCTGGAGGATTACTTGGGCCTGCGTAACTCGGATTCTTCAACTGCTACTTCAACATGTTCTGAATCGACGACCACGACGTCGAACCAATCTGAGGTCTGCGTGCCTGAGGAGTTCGCAAAGAGGTCACAGCTTGTGCCCTCAAACATTAAGATTGAAGATGGAGAAGGTGAATCGAGGACAGGGGATCACAGTGATGGCACTGCGACACCGATGCCCTTAGAGAATGAAGTGAAACATGAGGATTGCAATGATCGGGCAGCTGTATTAGGGACTGAGTTTCCTAGTTTGGATCAGTCGCAGAACTTTCCAATGGATGAAATATTCGAGCCGAGGACCGGGAATCAGGCTGATCATATGGCGATGCCTATGATCTTAGAGAAGCAAGTGAAGGATGAAGATCTTGATGCTGTATATCGTGATTGGAGCAATGACCAAGCAGTCTTACCAGAAGCCGGGATTTCTAGTCTGAATAATTTACAGAACTTTCAAATGGATGAAATGTTTGATGTGGAAGAGCTCCTAAACCTGATAAGTAGTGATTCCTTGTATGATCCAACAACAAACATCTTAAAGGGCAATGCAGATGGTTATACTAACGTAGCGCCTTCACAAGTTAGCAATCTTGGGTCTGAGAAGCCGTCAAGTTGGTCATACCAATTCCAAAATCCCGGAGCGAAGCTGCTCGGAAGTCTCCAACAGACGGAGCAAGCGCCGGCGGATGTAGACTATGGATTTGATTTTTTGAAGCAGGGGAGGGAGGAGGATCTGAATGCCGCAGCAGATGATTGTGTTAGATACCTGAACGAGATGGGTGATTTAGCTTACTTCATCAAACAAACAACAAGAATGAGAGTATAA 1320 45.68 MVEKMALSDQYSDAISLPKNSIRKRKSRSRRDRSTVAETLAKWKAYNECFDSCNDGSKPIRKAPAKGSKKGCMKGKGGPLNSHCNYRGVRQRTWGKWVAEIREPNRGSRLWLGTFPTAIEAALAYDEAARTMYGHSARLNLPNIKNRGQLQGILLEDYLGLRNSDSSTATSTCSESTTTTSNQSEVCVPEEFAKRSQLVPSNIKIEDGEGESRTGDHSDGTATPMPLENEVKHEDCNDRAAVLGTEFPSLDQSQNFPMDEIFEPRTGNQADHMAMPMILEKQVKDEDLDAVYRDWSNDQAVLPEAGISSLNNLQNFQMDEMFDVEELLNLISSDSLYDPTTNILKGNADGYTNVAPSQVSNLGSEKPSSWSYQFQNPGAKLLGSLQQTEQAPADVDYGFDFLKQGREEDLNAAADDCVRYLNEMGDLAYFIKQTTRMRV 439
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 6486334 6488256 + ClCG11G005990.2 Cla11g00574 284396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla11g00574 439 SUPERFAMILY DNA-binding domain 85 142 IPR016177 GO:0003677
Cla11g00574 439 SMART rav1_2 85 148 IPR001471 GO:0003700|GO:0006355
Cla11g00574 439 CDD AP2 84 143 IPR001471 GO:0003700|GO:0006355
Cla11g00574 439 Pfam AP2 domain 84 135 IPR001471 GO:0003700|GO:0006355
Cla11g00574 439 ProSiteProfiles AP2/ERF domain profile. 85 142 IPR001471 GO:0003700|GO:0006355
Cla11g00574 439 Gene3D AP2/ERF domain 85 143 IPR036955 GO:0003700|GO:0006355
Cla11g00574 439 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 19 401 - -
Cla11g00574 439 MobiDBLite consensus disorder prediction 203 227 - -
Cla11g00574 439 MobiDBLite consensus disorder prediction 165 186 - -
Cla11g00574 439 PRINTS Ethylene responsive element binding protein signature 86 97 IPR001471 GO:0003700|GO:0006355
Cla11g00574 439 PRINTS Ethylene responsive element binding protein signature 108 124 IPR001471 GO:0003700|GO:0006355
Cla11g00574 439 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 19 401 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla07g00438 Cla11g00574 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g01090 Cla-Chr2:23125164 Cla11g00574 Cla-Chr11:6486334 3.67E-47 dispersed
Cla08g01453 Cla-Chr8:27429935 Cla11g00574 Cla-Chr11:6486334 4.85E-29 dispersed
Cla10g01632 Cla-Chr10:31971690 Cla11g00574 Cla-Chr11:6486334 6.77E-26 dispersed
Cla11g00574 Cla-Chr11:6486334 Cla11g01505 Cla-Chr11:28727353 2.15E-25 dispersed
Cla11g00574 Cla-Chr11:6486334 Cla04g00678 Cla-Chr4:21530776 3.69E-44 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62018 PF00847 AP2 4.40E-15 CL0081 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla11g00574 - K09286 csv:101215431 629.402